Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.0e-48 195.3 90 100.0
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.9e-30 135.6 82 76.8
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 5.6e-30 134.0 73 82.2
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 3.1e-28 128.3 73 76.7
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.2e-27 126.3 73 75.3
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.4e-27 124.4 73 76.7
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 4.4e-27 124.4 73 76.7
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 5.8e-27 124.0 73 74.0
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 7.5e-27 123.6 73 75.3
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 7.5e-27 123.6 67 85.1
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 9.9e-27 123.2 73 74.0
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 9.9e-27 123.2 73 74.0
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.3e-26 122.9 73 74.0
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 1.3e-26 122.9 73 74.0
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.7e-26 122.5 73 72.6
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 2.2e-26 122.1 73 74.0
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 2.9e-26 121.7 72 73.6
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 3.7e-26 121.3 73 74.0
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 3.7e-26 121.3 73 72.6
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 4.9e-26 120.9 73 72.6
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 8.3e-26 120.2 73 74.0
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.1e-25 119.8 72 75.0
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 1.4e-25 119.4 73 74.0
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 1.4e-25 119.4 73 74.0
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 74.0
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 69.9
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.4e-25 119.4 73 72.6
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.9e-25 119.0 73 74.0
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.9e-25 119.0 73 74.0
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.9e-25 119.0 73 74.0
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.9e-25 119.0 73 72.6
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 1.9e-25 119.0 74 75.7
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.4e-25 118.6 73 72.6
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.4e-25 118.6 73 72.6
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 3.2e-25 118.2 73 72.6
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.2e-25 118.2 73 71.2
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 3.2e-25 118.2 73 74.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.1e-25 117.9 73 72.6
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 4.1e-25 117.9 73 72.6
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 4.1e-25 117.9 73 72.6
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 4.1e-25 117.9 73 71.2
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 5.4e-25 117.5 73 72.6
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 5.4e-25 117.5 73 72.6
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 5.4e-25 117.5 73 72.6
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.4e-25 117.5 73 72.6
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 5.4e-25 117.5 73 72.6
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 5.4e-25 117.5 73 72.6
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.4e-25 117.5 73 74.0
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 7.1e-25 117.1 72 73.6
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 9.2e-25 116.7 73 69.9
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 1.6e-24 115.9 73 71.2
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 1.6e-24 115.9 73 71.2
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 2.1e-24 115.5 82 65.9
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 2.1e-24 115.5 73 67.1
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 2.1e-24 115.5 73 69.9
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 3.5e-24 114.8 82 65.9
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 3.5e-24 114.8 82 65.9
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 3.5e-24 114.8 73 65.8
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.5e-24 114.8 73 71.2
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 3.5e-24 114.8 73 71.2
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 4.6e-24 114.4 69 72.5
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 4.6e-24 114.4 73 71.2
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 4.6e-24 114.4 73 69.9
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 6.0e-24 114.0 69 72.5
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.8e-24 113.6 73 69.9
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 7.8e-24 113.6 73 69.9
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 7.8e-24 113.6 73 71.2
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 7.8e-24 113.6 73 69.9
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.0e-23 113.2 69 72.5
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 1.0e-23 113.2 69 71.0
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.3e-23 112.8 73 68.5
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.3e-23 112.8 73 68.5
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.3e-23 112.8 83 65.1
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.3e-23 112.8 73 68.5
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.7e-23 112.5 67 73.1
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.7e-23 112.5 69 73.9
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 1.7e-23 112.5 73 68.5
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.7e-23 112.5 73 68.5
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.7e-23 112.5 73 68.5
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 1.7e-23 112.5 73 69.9
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.7e-23 112.5 73 67.1
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 1.7e-23 112.5 82 63.4
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 1.7e-23 112.5 72 69.4
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.7e-23 112.5 73 68.5
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.7e-23 112.5 72 68.1
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 2.3e-23 112.1 69 73.9
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 2.3e-23 112.1 69 73.9
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 2.3e-23 112.1 64 76.6
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.3e-23 112.1 69 71.0
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.3e-23 112.1 69 71.0
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.3e-23 112.1 69 71.0
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.3e-23 112.1 69 72.5
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 2.3e-23 112.1 73 68.5
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.3e-23 112.1 73 67.1
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 2.3e-23 112.1 73 68.5
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.0e-23 111.7 69 73.9
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 3.0e-23 111.7 73 69.9
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 3.0e-23 111.7 72 68.1
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 3.0e-23 111.7 69 72.5
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 3.9e-23 111.3 73 65.8
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.9e-23 111.3 73 68.5
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 3.9e-23 111.3 69 71.0
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 3.9e-23 111.3 69 72.5
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.9e-23 111.3 66 75.8
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.1e-23 110.9 69 72.5
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 5.1e-23 110.9 73 67.1
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 5.1e-23 110.9 72 68.1
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 6.6e-23 110.5 72 70.8
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 6.6e-23 110.5 73 65.8
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 6.6e-23 110.5 67 74.6
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 6.6e-23 110.5 68 69.1
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 6.6e-23 110.5 66 75.8
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 8.6e-23 110.2 69 71.0
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.5e-22 109.4 73 67.1
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.9e-22 109.0 73 67.1
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 1.9e-22 109.0 69 69.6
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 2.5e-22 108.6 82 62.2
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 2.5e-22 108.6 74 66.2
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 3.3e-22 108.2 68 69.1
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 4.3e-22 107.8 73 65.8
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 4.3e-22 107.8 69 69.6
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 5.6e-22 107.5 73 67.1
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 7.3e-22 107.1 70 68.6
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 7.3e-22 107.1 67 68.7
MELO3C035505.2 Cucumis melo HOM05D004069 ORTHO05D004699 7.3e-22 107.1 63 73.0
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 9.5e-22 106.7 68 67.6
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 9.5e-22 106.7 73 64.4
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.2e-21 106.3 69 69.6
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.2e-21 106.3 64 70.3
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.6e-21 105.9 73 65.8
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 1.6e-21 105.9 73 63.0
HanXRQChr05g0152631 Helianthus annuus HOM05D001685 ORTHO05D007488 2.8e-21 105.1 60 78.3
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 2.8e-21 105.1 73 64.4
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 3.6e-21 104.8 78 62.8
CANSAT54G1967 Cannabis sativa HOM05D004069 ORTHO05D004699 6.2e-21 104.0 60 76.7
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 6.2e-21 104.0 81 59.3
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 8.1e-21 103.6 72 69.4
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 1.8e-20 102.4 73 61.6
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.8e-20 102.4 73 63.0
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 2.4e-20 102.1 66 68.2
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 1.2e-19 99.8 83 56.6
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 1.5e-19 99.4 73 63.0
Ca_23836_v3 Cicer arietinum L. HOM05D004069 ORTHO05D004699 2.6e-19 98.6 63 71.4
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 2.6e-19 98.6 73 61.6
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 4.4e-19 97.8 55 72.7
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 1.7e-18 95.9 73 58.9
AUR62031965 Chenopodium quinoa HOM05D004069 ORTHO05D004699 2.2e-18 95.5 57 75.4
Lsat_1_v5_gn_5_162901 Lactuca sativa HOM05D004069 ORTHO05D004699 3.8e-18 94.7 63 63.5
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 1.2e-16 89.7 55 70.9
SGA_v2.0_scaffold122G33247 Striga asiatica HOM05D002362 ORTHO05D002465 1.6e-16 89.4 55 67.3
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 7.8e-16 87.0 63 58.7
Ah.01g017190 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.3e-15 86.3 57 70.2
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.7e-15 85.9 74 55.4
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.9e-15 84.7 67 58.2
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.1e-14 83.2 67 55.2
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 5.6e-14 80.9 68 54.4
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 1.2e-13 79.7 42 81.0
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 6.2e-13 77.4 72 47.2
VMungo0720G1128 Vigna mungo HOM05D004069 ORTHO05D004699 1.4e-12 76.3 55 63.6
VMungo0251G3681 Vigna mungo HOM05D039118 ORTHO05D004699 3.1e-12 75.1 45 68.9
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 9.0e-12 73.6 38 78.9
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 5.4e-09 64.3 32 84.4
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 3.0e-07 58.5 54 44.4


User provided reference genes

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