Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 0.0e+00 1526.5 742 100.0
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 0.0e+00 1265.8 743 82.9
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 0.0e+00 1176.4 738 78.5
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 0.0e+00 1109.7 886 65.6
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 0.0e+00 1099.7 793 70.4
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 0.0e+00 1088.9 679 76.7
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 0.0e+00 1075.8 780 67.9
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 3.2e-309 1064.7 785 67.3
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 6.8e-307 1057.0 795 67.0
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 5.2e-299 1030.8 721 70.3
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 6.8e-299 1030.4 793 66.0
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 1.4e-296 1022.7 715 71.9
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 3.2e-296 1021.5 704 71.2
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 1.0e-294 1016.5 678 71.5
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 4.7e-292 1007.7 691 70.8
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 3.4e-290 1001.5 694 71.2
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 3.4e-290 1001.5 729 66.5
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 8.3e-289 996.9 707 69.0
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 2.4e-288 995.3 724 67.8
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 6.0e-287 990.7 709 68.0
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 3.0e-286 988.4 714 67.9
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 3.9e-286 988.0 702 68.8
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 3.3e-285 984.9 765 65.2
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 5.6e-285 984.2 704 69.2
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 2.0e-282 975.7 747 66.5
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 1.3e-281 973.0 694 69.6
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 6.4e-281 970.7 708 67.7
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 1.6e-279 966.1 707 65.9
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 6.0e-279 964.1 721 65.7
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 1.7e-278 962.6 733 65.1
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 6.6e-278 960.7 632 71.7
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 1.5e-277 959.5 688 68.3
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 1.9e-277 959.1 670 69.1
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 5.6e-277 957.6 725 64.4
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 7.3e-277 957.2 710 66.3
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 1.1e-275 953.4 742 64.8
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 7.6e-274 947.2 716 65.6
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 1.7e-270 936.0 709 65.4
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 6.6e-270 934.1 681 67.0
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 1.1e-267 926.8 659 67.1
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 1.1e-267 926.8 625 69.8
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 3.1e-267 925.2 669 67.4
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 1.2e-266 923.3 585 72.6
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 4.9e-265 917.9 719 63.3
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 6.4e-265 917.5 667 66.4
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.4e-264 916.4 778 61.3
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 3.5e-263 911.8 580 72.4
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 4.6e-263 911.4 691 64.1
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.0e-262 910.2 684 64.8
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 1.3e-262 909.8 629 68.0
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.7e-262 909.4 667 66.1
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 1.1e-261 906.7 749 60.9
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 3.3e-261 905.2 1000 50.0
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.4e-259 899.0 725 62.5
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 1.7e-257 892.9 663 68.0
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 4.2e-256 888.3 675 64.7
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 4.2e-256 888.3 692 62.6
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 2.7e-255 885.6 718 60.2
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 1.1e-253 880.2 613 66.6
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 8.1e-252 874.0 692 61.6
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 5.3e-251 871.3 565 73.3
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 3.2e-248 862.1 586 67.9
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 5.5e-248 861.3 536 76.1
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 2.1e-247 859.4 589 67.4
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 3.0e-246 855.5 740 59.6
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 6.7e-246 854.4 751 61.1
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 7.4e-245 850.9 685 60.9
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 3.1e-243 845.5 682 61.0
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 3.2e-240 835.5 619 65.3
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 4.2e-240 835.1 566 71.4
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-239 833.6 585 69.9
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 1.2e-239 833.6 510 79.2
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 2.7e-239 832.4 666 62.5
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.8e-235 819.7 678 61.9
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 5.9e-234 814.7 513 73.1
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 1.2e-231 807.0 571 69.9
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.8e-230 803.1 534 71.0
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 3.0e-222 775.8 483 73.7
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 1.1e-221 773.9 512 73.8
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 7.0e-219 764.6 758 56.3
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.2e-218 763.8 538 70.8
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 1.2e-215 753.8 685 56.9
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.8e-209 732.3 510 67.3
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 3.8e-209 732.3 733 55.1
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 3.3e-205 719.2 703 55.0
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.2e-204 716.5 500 69.8
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.1e-203 714.1 522 66.5
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.3e-201 707.2 524 65.6
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.3e-201 707.2 573 60.7
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.6e-191 673.7 619 57.2
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 3.0e-190 669.5 500 66.2
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 8.9e-190 667.9 510 66.5
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 4.1e-187 659.1 416 74.5
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 1.6e-186 657.1 605 57.9
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 2.0e-173 613.6 699 51.4
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 6.6e-169 598.6 651 52.5
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 4.8e-143 512.7 339 71.1
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 9.3e-139 498.4 381 64.0
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 8.1e-135 485.3 721 41.5
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 2.9e-116 423.7 286 70.3
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 3.3e-104 383.6 463 47.3
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 1.9e-91 341.3 209 74.6
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 2.3e-81 307.8 297 54.9
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 2.6e-80 304.3 309 52.4
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.7e-76 291.6 270 57.8
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.9e-76 290.8 673 31.9
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 8.6e-76 289.3 324 48.8
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 7.5e-72 276.2 240 59.2
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 2.4e-70 271.2 237 56.5
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.6e-69 268.5 244 57.0
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 2.5e-59 234.6 208 58.2
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 9.8e-56 222.6 207 53.1
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 2.4e-46 191.4 199 53.3
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 5.4e-46 190.3 197 51.8
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-40 172.6 114 74.6
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 1.7e-39 168.7 91 80.2
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 3.8e-39 167.5 470 25.5
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 1.2e-37 162.5 124 60.5
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 2.1e-37 161.8 672 24.0
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 2.5e-35 154.8 115 65.2
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.8e-34 150.6 176 50.0
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 1.4e-33 149.1 129 62.0
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 6.9e-33 146.7 103 71.8
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-32 146.0 147 54.4
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 8.4e-31 139.8 328 29.9
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 7.1e-30 136.7 599 22.0
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 2.7e-29 134.8 78 85.9
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 7.9e-29 133.3 490 24.7
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 5.6e-27 127.1 263 35.7
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.7e-21 108.2 206 36.9
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 6.9e-17 93.6 58 72.4
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 1.2e-16 92.8 132 40.9
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 1.7e-15 89.0 64 67.2


User provided reference genes

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