Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016717 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 3.9e-75 284.6 138 100.0
CSS0014698 Camellia sinensis var. sinensis HOM05D006839 ORTHO05D007872 1.5e-74 282.7 138 99.3
vmacro14927 Vaccinium macrocarpon HOM05D000265 ORTHO05D000161 1.2e-55 219.9 132 78.8
Hma1.2p1_0257F.1_g103610 Hydrangea macrophylla HOM05D000265 ORTHO05D007872 6.7e-51 204.1 114 80.7
Actinidia24884 Actinidia chinensis HOM05D006839 ORTHO05D007872 2.0e-50 202.6 129 76.7
Duzib211G0653 Durio zibethinus HOM05D006839 ORTHO05D007872 3.1e-48 195.3 114 80.7
Atru.chr5.1418 Acer truncatum HOM05D006839 ORTHO05D007872 4.1e-48 194.9 128 71.1
Potri.005G208400 Populus trichocarpa HOM05D006839 ORTHO05D007872 1.6e-47 193.0 138 66.7
COL.COLO4_09110 Corchorus olitorius HOM05D006839 ORTHO05D007872 2.6e-47 192.2 138 65.2
Manes.05G075300 Manihot esculenta HOM05D006839 ORTHO05D007872 2.6e-47 192.2 138 66.7
SalBow4G2140 Salvia bowleyana HOM05D006839 ORTHO05D007872 1.3e-46 189.9 134 67.9
TWI59G1109 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 2.9e-46 188.7 138 65.9
Gohir.A11G122100 Gossypium hirsutum HOM05D006839 ORTHO05D007872 3.8e-46 188.3 124 71.8
Gohir.D11G127300 Gossypium hirsutum HOM05D006839 ORTHO05D007872 3.8e-46 188.3 124 71.8
Gohir.D11G127350 Gossypium hirsutum HOM05D006839 ORTHO05D007872 3.8e-46 188.3 124 71.8
Gorai.007G136000 Gossypium raimondii HOM05D006839 ORTHO05D007872 3.8e-46 188.3 124 71.0
TWI14G1288 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 8.5e-46 187.2 138 68.8
ECA248G0593 Erigeron canadensis HOM05D006839 ORTHO05D007872 2.5e-45 185.7 131 67.9
Lsat_1_v5_gn_5_190060 Lactuca sativa HOM05D006839 ORTHO05D007872 5.5e-45 184.5 138 66.7
Glyma.02G148000 Glycine max HOM05D006839 ORTHO05D007872 9.4e-45 183.7 128 66.4
CsaV3_6G037040 Cucumis sativus L. HOM05D006839 ORTHO05D007872 1.2e-44 183.3 128 65.6
Ciclev10023291m.g Citrus clementina HOM05D006839 ORTHO05D007872 2.1e-44 182.6 121 71.1
Glyma.10G025800 Glycine max HOM05D006839 ORTHO05D007872 4.7e-44 181.4 128 64.1
Thecc.01G280800 Theobroma cacao HOM05D006839 ORTHO05D007872 4.7e-44 181.4 128 70.3
Prupe.8G242500 Prunus persica HOM05D006839 ORTHO05D007872 6.1e-44 181.0 139 62.6
CiPaw.08G104600 Carya illinoinensis HOM05D006839 ORTHO05D007872 8.0e-44 180.6 126 65.9
Cpa.g.sc52.24 Carica papaya HOM05D006839 ORTHO05D007872 1.8e-43 179.5 113 72.6
FvH4_2g23730 Fragaria vesca HOM05D006839 ORTHO05D007872 1.8e-43 179.5 128 63.3
Phvul.001G150100 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.8e-43 179.5 127 67.7
Haze_04725 Corylus avellana HOM05D006839 ORTHO05D007872 2.3e-43 179.1 127 66.1
MELO3C014411.2 Cucumis melo HOM05D006839 ORTHO05D007872 2.3e-43 179.1 128 63.3
TAR636G2925 Trochodendron aralioides HOM05D006839 ORTHO05D007872 2.3e-43 179.1 129 65.9
Glyma.19G155100 Glycine max HOM05D006839 ORTHO05D007872 3.0e-43 178.7 126 65.9
Migut.D00285 Erythranthe guttata HOM05D006839 ORTHO05D007872 4.0e-43 178.3 132 65.9
MD11G1287200 Malus domestica HOM05D006839 ORTHO05D007872 4.0e-43 178.3 133 61.7
VMungo0720G2173 Vigna mungo HOM05D006839 ORTHO05D007872 5.2e-43 177.9 115 69.6
VMungo1383G1584 Vigna mungo HOM05D006839 ORTHO05D007872 5.2e-43 177.9 127 66.9
FAN24G3533 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.2e-42 176.8 128 62.5
Oeu022880.1 Olea europaea HOM05D006839 ORTHO05D007872 1.5e-42 176.4 136 61.8
Phvul.007G171000 Phaseolus vulgaris HOM05D006839 ORTHO05D007872 1.5e-42 176.4 127 64.6
Lj1g0018770 Lotus japonicus HOM05D006839 ORTHO05D007872 5.7e-42 174.5 116 68.1
RcHm_v2.0_Chr6g0291211 Rosa chinensis HOM05D006839 ORTHO05D007872 1.3e-41 173.3 132 62.9
QL12p022082 Quercus lobata HOM05D006839 ORTHO05D007872 1.7e-41 172.9 129 64.3
Sabra05G0158500 Salix brachista HOM05D006839 ORTHO05D007872 1.7e-41 172.9 129 64.3
MBI19_g14316_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 2.2e-41 172.6 111 68.5
MBI19_g46647_MAGBIO Magnolia biondii HOM05D006839 ORTHO05D007872 2.2e-41 172.6 111 68.5
Aqoxy2G03292 Aquilegia oxysepala HOM05D006839 ORTHO05D007872 4.8e-41 171.4 129 58.9
PGR119G0017 Punica granatum HOM05D006839 ORTHO05D007872 1.4e-40 169.9 130 62.3
Nitab4.5_0001028g0040 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.8e-40 169.5 136 60.3
PGSC0003DMG400039700 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.8e-40 169.5 137 59.1
PGSC0003DMG402026866 Solanum tuberosum HOM05D006839 ORTHO05D007872 1.8e-40 169.5 137 59.1
Eucgr.K03376 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.4e-40 169.1 113 67.3
Nitab4.5_0007089g0020 Nicotiana tabacum HOM05D006839 ORTHO05D007872 5.4e-40 167.9 133 61.7
Solyc09g065040.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.6e-39 166.4 137 59.1
Nn1g02187 Nelumbo nucifera HOM05D006839 ORTHO05D007872 3.5e-39 165.2 134 60.4
Cc01_g19590 Coffea canephora HOM05D006839 ORTHO05D007872 5.9e-39 164.5 124 63.7
Sopen09g026780 Solanum pennellii HOM05D006839 ORTHO05D007872 5.9e-39 164.5 137 58.4
Cfa006129 Carpinus fangiana HOM05D006839 ORTHO05D007872 2.9e-38 162.2 129 61.2
Medtr7g094760 Medicago truncatula HOM05D006839 ORTHO05D007872 2.9e-38 162.2 128 61.7
Rhsim01G0275200 Rhododendron simsii HOM05D006839 ORTHO05D007872 1.5e-37 159.8 113 69.9
FAN15G1162 Fragaria x ananassa HOM05D006839 ORTHO05D007872 1.9e-37 159.5 121 60.3
Sed0018644 Sechium edule HOM05D006839 ORTHO05D007872 3.2e-37 158.7 127 60.6
Glyma.03G152600 Glycine max HOM05D006839 ORTHO05D007872 1.6e-36 156.4 126 61.1
FAN27G2541 Fragaria x ananassa HOM05D006839 ORTHO05D007872 2.1e-36 156.0 128 57.8
FAN20G2906 Fragaria x ananassa HOM05D006839 ORTHO05D007872 2.7e-36 155.6 121 59.5
ATR0626G183 Amborella trichopoda HOM05D006839 ORTHO05D007872 3.0e-35 152.1 116 59.5
SalBow7G1292 Salvia bowleyana HOM05D006839 ORTHO05D007872 9.8e-34 147.1 134 55.2
Zm00001eb305770 Zea mays HOM05D006839 ORTHO05D007872 4.5e-31 138.3 112 56.2
CAN.G619.39 Capsicum annuum HOM05D006839 ORTHO05D007872 2.9e-30 135.6 131 49.6
PGSC0003DMG400041475 Solanum tuberosum HOM05D006839 ORTHO05D007872 4.2e-29 131.7 128 50.8
SEGI_06174 Sequoiadendron giganteum HOM05D006839 ORTHO05D007872 1.0e-27 127.1 127 52.0
Peaxi162Scf00681g00001 Petunia axillaris HOM05D006839 ORTHO05D007872 3.0e-27 125.6 131 47.3
CAN.G619.36 Capsicum annuum HOM05D006839 ORTHO05D007872 6.8e-27 124.4 112 52.7
PGSC0003DMG400045936 Solanum tuberosum HOM05D006839 ORTHO05D007872 8.9e-27 124.0 112 51.8
Peaxi162Scf00681g00007 Petunia axillaris HOM05D006839 ORTHO05D007872 9.8e-26 120.6 124 49.2
Migut.N02162 Erythranthe guttata HOM05D006839 ORTHO05D007872 2.2e-25 119.4 127 43.3
HPP92_001336 Vanilla planifolia HOM05D006839 ORTHO05D007872 8.3e-25 117.5 129 45.0
Solyc04g026140.1 Solanum lycopersicum HOM05D006839 ORTHO05D007872 1.1e-24 117.1 130 44.6
SalBow6G6528 Salvia bowleyana HOM05D006839 ORTHO05D007872 7.0e-24 114.4 112 47.3
Migut.N02163 Erythranthe guttata HOM05D006839 ORTHO05D007872 2.7e-23 112.5 135 41.5
CAN.G619.35 Capsicum annuum HOM05D006839 ORTHO05D007872 5.9e-23 111.3 104 51.0
Eucgr.L02237 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.9e-22 108.6 115 45.2
PGSC0003DMG400046937 Solanum tuberosum HOM05D006839 ORTHO05D007872 5.6e-21 104.8 108 45.4
Nitab4.5_0000771g0180 Nicotiana tabacum HOM05D006839 ORTHO05D007872 9.5e-21 104.0 128 43.8
SalBow6G4286 Salvia bowleyana HOM05D006839 ORTHO05D007872 9.5e-21 104.0 127 42.5
Nitab4.5_0006691g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.6e-20 103.2 99 49.5
Eucgr.A00826 Eucalyptus grandis HOM05D006839 ORTHO05D007872 6.1e-20 101.3 112 39.3
PGSC0003DMG400029246 Solanum tuberosum HOM05D006839 ORTHO05D007872 8.0e-20 100.9 83 56.6
Nitab4.5_0000771g0190 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.4e-19 100.1 93 50.5
SMO364G0778 Selaginella moellendorffii HOM05D006839 ORTHO05D007872 1.4e-19 100.1 128 37.5
Eucgr.L02238 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.3e-19 99.4 115 42.6
SalBow6G2151 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.3e-19 99.4 123 39.8
Eucgr.H00898 Eucalyptus grandis HOM05D006839 ORTHO05D007872 6.8e-19 97.8 128 42.2
SalBow6G0334 Salvia bowleyana HOM05D006839 ORTHO05D007872 2.0e-18 96.3 130 38.5
Nitab4.5_0009973g0050 Nicotiana tabacum HOM05D006839 ORTHO05D007872 2.6e-18 95.9 128 39.8
SalBow6G5378 Salvia bowleyana HOM05D006839 ORTHO05D007872 7.5e-18 94.4 128 38.3
Actinidia21107 Actinidia chinensis HOM05D000265 ORTHO05D000161 1.3e-17 93.6 55 74.5
Nitab4.5_0006691g0070 Nicotiana tabacum HOM05D006839 ORTHO05D007872 3.7e-17 92.0 114 41.2
SalBow6G6538 Salvia bowleyana HOM05D006839 ORTHO05D007872 8.3e-17 90.9 129 37.2
Peaxi162Scf00681g00002 Petunia axillaris HOM05D006839 ORTHO05D007872 1.1e-16 90.5 116 44.8
Eucgr.J01400 Eucalyptus grandis HOM05D006839 ORTHO05D007872 2.4e-16 89.4 113 40.7
Eucgr.H01539 Eucalyptus grandis HOM05D006839 ORTHO05D007872 3.2e-16 89.0 126 38.9
Eucgr.A00847 Eucalyptus grandis HOM05D006839 ORTHO05D007872 9.2e-16 87.4 125 32.8
Eucgr.L00883 Eucalyptus grandis HOM05D006839 ORTHO05D007872 4.6e-15 85.1 88 47.7
Nitab4.5_0009973g0030 Nicotiana tabacum HOM05D006839 ORTHO05D007872 1.3e-14 83.6 110 44.5
PGR083G1544 Punica granatum HOM05D006839 ORTHO05D007872 1.7e-14 83.2 132 33.3
PGR084G0009 Punica granatum HOM05D006839 ORTHO05D007872 1.5e-13 80.1 141 31.9
PGR142G2474 Punica granatum HOM05D006839 ORTHO05D007872 1.5e-13 80.1 141 31.9
PGR119G1259 Punica granatum HOM05D006839 ORTHO05D007872 4.3e-13 78.6 109 39.4
Nitab4.5_0000003g0350 Nicotiana tabacum HOM05D006839 ORTHO05D007872 7.3e-13 77.8 111 38.7
TWI73G0617 Tripterygium wilfordii HOM05D006839 ORTHO05D007872 6.2e-12 74.7 141 34.8
AagrBONN_evm.TU.Sc2ySwM_344.1663 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.2e-10 70.5 115 35.7
AagrBONN_evm.TU.Sc2ySwM_344.366 Anthoceros agrestis HOM05D006839 ORTHO05D007872 1.2e-10 70.5 106 34.0
PGR031G1999 Punica granatum HOM05D006839 ORTHO05D007872 1.3e-09 67.0 105 36.2
PGR083G0613 Punica granatum HOM05D006839 ORTHO05D007872 1.7e-09 66.6 141 33.3
AagrBONN_evm.TU.Sc2ySwM_344.1661 Anthoceros agrestis HOM05D058811 ORTHO05D019592 2.2e-09 66.2 106 32.1
PGR142G4476 Punica granatum HOM05D006839 ORTHO05D007872 8.3e-09 64.3 112 34.8
Peaxi162Scf00681g00011 Petunia axillaris HOM05D006839 ORTHO05D007872 5.4e-08 61.6 113 37.2
AagrBONN_evm.TU.Sc2ySwM_368.904 Anthoceros agrestis HOM05D032606 ORTHO05D007872 2.1e-07 59.7 113 31.9
LjContig00408g0014473 Lotus japonicus HOM05D000022 ORTHO05D000071 3.5e-07 58.9 84 40.5
SEGI_08922 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 4.6e-07 58.5 111 28.8
Nitab4.5_0000771g0200 Nicotiana tabacum HOM05D006839 ORTHO05D007872 6.0e-07 58.2 101 34.7
Zm00001eb291380 Zea mays HOM05D000022 ORTHO05D000071 1.3e-06 57.0 98 33.7
TAR629G0888 Trochodendron aralioides HOM05D000022 ORTHO05D000306 1.7e-06 56.6 103 33.0
COL.COLO4_04504 Corchorus olitorius HOM05D000022 ORTHO05D000306 3.0e-06 55.8 75 37.3
TPR.G5552 Trifolium pratense HOM05D000022 ORTHO05D000071 3.0e-06 55.8 52 46.2
LjContig00408g0021573 Lotus japonicus HOM05D000022 ORTHO05D000071 3.9e-06 55.5 84 38.1
SEGI_31021 Sequoiadendron giganteum HOM05D000022 ORTHO05D000071 3.9e-06 55.5 88 35.2
TPR.G10812 Trifolium pratense HOM05D000022 ORTHO05D000306 3.9e-06 55.5 52 48.1
Lj5g0003096 Lotus japonicus HOM05D000022 ORTHO05D000071 5.1e-06 55.1 52 48.1
Manes.12G052300 Manihot esculenta HOM05D000022 ORTHO05D000306 5.1e-06 55.1 75 36.0
CSS0048814 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000306 6.6e-06 54.7 112 31.2
Glyma.09G151400 Glycine max HOM05D000022 ORTHO05D010537 6.6e-06 54.7 52 46.2
Sed0006695 Sechium edule HOM05D000022 ORTHO05D000306 6.6e-06 54.7 54 44.4
Potri.004G023700 Populus trichocarpa HOM05D000022 ORTHO05D000071 8.6e-06 54.3 79 35.4
PGR005G0005 Punica granatum HOM05D023640 ORTHO05D019592 8.6e-06 54.3 85 38.8


User provided reference genes

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