Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016710 Camellia sinensis var. sinensis HOM05D007356 ORTHO05D009247 2.5e-232 808.5 442 100.0
Actinidia18124 Actinidia chinensis HOM05D007356 ORTHO05D009247 1.3e-135 487.3 400 68.2
Dinv34849 Davidia involucrata HOM05D007356 ORTHO05D009247 2.0e-125 453.4 380 66.1
Hma1.2p1_0136F.1_g062070 Hydrangea macrophylla HOM05D007356 ORTHO05D009247 1.6e-114 417.2 406 59.1
vmacro05573 Vaccinium macrocarpon HOM05D007356 ORTHO05D009247 1.9e-110 403.7 400 60.2
Rhsim10G0063400 Rhododendron simsii HOM05D007356 ORTHO05D009247 5.6e-107 392.1 404 59.2
Haze_14128 Corylus avellana HOM05D007356 ORTHO05D009247 1.1e-99 367.9 409 56.0
Cfa007946 Carpinus fangiana HOM05D007356 ORTHO05D009247 2.6e-96 356.7 410 54.9
Prupe.3G239800 Prunus persica HOM05D007356 ORTHO05D009247 1.3e-90 337.8 412 54.1
QL02p052579 Quercus lobata HOM05D007356 ORTHO05D009247 5.8e-88 328.9 494 47.0
MD09G1084700 Malus domestica HOM05D007356 ORTHO05D009247 2.4e-86 323.6 415 53.7
MD17G1074100 Malus domestica HOM05D007356 ORTHO05D009247 4.2e-86 322.8 424 50.9
Nitab4.5_0004118g0090 Nicotiana tabacum HOM05D007356 ORTHO05D009247 9.3e-86 321.6 372 53.8
PGSC0003DMG400012678 Solanum tuberosum HOM05D007356 ORTHO05D009247 9.3e-86 321.6 363 53.2
TAR374G1737 Trochodendron aralioides HOM05D007356 ORTHO05D009247 4.6e-85 319.3 416 50.5
Sopen02g030430 Solanum pennellii HOM05D007356 ORTHO05D009247 6.0e-85 318.9 363 52.3
Nitab4.5_0008781g0020 Nicotiana tabacum HOM05D007356 ORTHO05D009247 1.7e-84 317.4 369 52.8
Lsat_1_v5_gn_4_153101 Lactuca sativa HOM05D007356 ORTHO05D009247 5.1e-84 315.8 444 50.0
Nn4g23745 Nelumbo nucifera HOM05D007356 ORTHO05D009247 8.7e-84 315.1 457 47.9
Solyc02g085740.4 Solanum lycopersicum HOM05D007356 ORTHO05D009247 1.5e-83 314.3 406 50.0
Manes.01G108100 Manihot esculenta HOM05D007356 ORTHO05D009247 1.3e-82 311.2 404 53.5
Potri.017G112500 Populus trichocarpa HOM05D007356 ORTHO05D009247 8.1e-82 308.5 400 49.8
ClCG05G012060 Citrullus lanatus HOM05D007356 ORTHO05D009247 1.4e-81 307.8 412 48.8
Oeu030757.2 Olea europaea HOM05D007356 ORTHO05D009247 4.0e-81 306.2 409 48.4
CsaV3_3G020350 Cucumis sativus L. HOM05D007356 ORTHO05D009247 9.9e-80 301.6 410 47.3
Peaxi162Scf01327g00135 Petunia axillaris HOM05D007356 ORTHO05D009247 2.4e-78 297.0 408 49.3
Cpa.g.sc179.26 Carica papaya HOM05D007356 ORTHO05D009247 4.2e-78 296.2 414 50.0
FvH4_6g45360 Fragaria vesca HOM05D007356 ORTHO05D009247 4.2e-78 296.2 404 50.5
FAN14G2396 Fragaria x ananassa HOM05D007356 ORTHO05D009247 7.1e-78 295.4 401 50.9
Potri.004G102400 Populus trichocarpa HOM05D007356 ORTHO05D009247 7.1e-78 295.4 404 48.3
Cc07_g09030 Coffea canephora HOM05D007356 ORTHO05D009247 2.1e-77 293.9 415 46.7
arahy.Tifrunner.gnm1.ann1.33CL05 Arachis hypogaea HOM05D007356 ORTHO05D009247 1.3e-76 291.2 412 47.3
Atru.chr8.830 Acer truncatum HOM05D007356 ORTHO05D009247 2.3e-76 290.4 401 49.1
arahy.Tifrunner.gnm1.ann1.3VIJ8X Arachis hypogaea HOM05D007356 ORTHO05D009247 5.1e-76 289.3 412 47.1
CANSAT64G1351 Cannabis sativa HOM05D007356 ORTHO05D009247 5.6e-75 285.8 414 46.1
PSO782G4491 Papaver somniferum HOM05D007356 ORTHO05D009247 2.0e-72 277.3 422 45.5
Sabra17G0093200 Salix brachista HOM05D007356 ORTHO05D009247 3.4e-72 276.6 413 46.0
HanXRQChr14g0438671 Helianthus annuus HOM05D007356 ORTHO05D009247 4.5e-72 276.2 402 49.5
Thecc.04G137600 Theobroma cacao HOM05D007356 ORTHO05D009247 6.5e-71 272.3 416 46.2
Ciclev10011716m.g Citrus clementina HOM05D007356 ORTHO05D009247 8.4e-71 271.9 407 45.9
COL.COLO4_16192 Corchorus olitorius HOM05D007356 ORTHO05D009247 4.6e-69 266.2 409 45.0
PSO063G7355 Papaver somniferum HOM05D007356 ORTHO05D009247 1.0e-68 265.0 420 43.8
Aqoxy3G03920 Aquilegia oxysepala HOM05D007356 ORTHO05D009247 5.1e-68 262.7 417 44.6
Hund13734 Selenicereus undatus HOM05D007356 ORTHO05D009247 2.5e-67 260.4 423 43.5
Duzib133G0592 Durio zibethinus HOM05D007356 ORTHO05D009247 9.6e-67 258.5 407 43.7
SGA_v2.0_scaffold33G13428 Striga asiatica HOM05D007356 ORTHO05D009247 2.8e-66 256.9 370 45.9
Lj2g0005002 Lotus japonicus HOM05D007356 ORTHO05D009247 1.8e-65 254.2 405 44.4
DCAR_017218 Daucus carota HOM05D007356 ORTHO05D009247 5.3e-65 252.7 408 43.4
TWI31G0521 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 5.3e-65 252.7 405 43.2
AUR62014539 Chenopodium quinoa HOM05D007356 ORTHO05D009247 2.0e-64 250.8 420 41.0
Migut.H00199 Erythranthe guttata HOM05D007356 ORTHO05D009247 7.6e-64 248.8 378 46.3
Gorai.007G180100 Gossypium raimondii HOM05D007356 ORTHO05D009247 2.2e-63 247.3 410 43.2
Gohir.A11G162300 Gossypium hirsutum HOM05D007356 ORTHO05D009247 2.5e-62 243.8 409 42.5
TWI79G1397 Tripterygium wilfordii HOM05D007356 ORTHO05D009247 2.5e-62 243.8 363 43.5
Gohir.D11G168600 Gossypium hirsutum HOM05D007356 ORTHO05D009247 9.3e-62 241.9 410 42.7
Ah.16g101940 Amaranthus hybridus HOM05D007356 ORTHO05D009247 3.9e-60 236.5 425 41.9
THA.LOC104820954 Tarenaya hassleriana HOM05D007356 ORTHO05D009247 6.7e-60 235.7 411 40.9
MBI16_g25107_MAGBIO Magnolia biondii HOM05D007356 ORTHO05D009247 1.1e-59 235.0 426 42.5
CARHR076490 Cardamine hirsuta HOM05D007356 ORTHO05D009247 1.3e-58 231.5 411 40.6
Lalb_Chr06g0174681 Lupinus albus HOM05D007356 ORTHO05D009247 2.2e-58 230.7 408 44.4
TPR.G32461 Trifolium pratense HOM05D007356 ORTHO05D009247 6.3e-58 229.2 412 42.5
AL3G11850 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 2.6e-56 223.8 414 39.6
Medtr6g017235 Medicago truncatula HOM05D007356 ORTHO05D009247 5.9e-56 222.6 409 42.1
Glyma.13G047100 Glycine max HOM05D007356 ORTHO05D009247 5.0e-55 219.5 409 43.0
ECA232G5000 Erigeron canadensis HOM05D007356 ORTHO05D009247 6.5e-55 219.2 269 51.7
Sed0002469 Sechium edule HOM05D007356 ORTHO05D009247 1.1e-54 218.4 275 49.8
MELO3C023764.2 Cucumis melo HOM05D007356 ORTHO05D009247 3.6e-53 213.4 303 44.6
VMungo0464G1268 Vigna mungo HOM05D007356 ORTHO05D009247 5.1e-52 209.5 425 40.7
Phvul.004G062800 Phaseolus vulgaris HOM05D007356 ORTHO05D009247 2.0e-51 207.6 413 41.4
Aa31LG5G12990 Aethionema arabicum HOM05D007356 ORTHO05D009247 5.7e-51 206.1 411 37.0
EL10Ac2g04607 Beta vulgaris HOM05D007356 ORTHO05D009247 1.3e-50 204.9 519 34.7
CDE02G0316 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 7.2e-46 189.1 419 37.2
AUR62008964 Chenopodium quinoa HOM05D007356 ORTHO05D009247 3.6e-45 186.8 301 41.5
CDE08G0776 Ceratophyllum demersum HOM05D007356 ORTHO05D009247 6.1e-45 186.0 419 37.0
PGR042G1693 Punica granatum HOM05D007356 ORTHO05D009247 1.8e-44 184.5 271 49.4
Psat1g012920 Pisum sativum HOM05D007356 ORTHO05D009247 3.9e-44 183.3 257 46.3
Sc11g0008200 Simmondsia chinensis HOM05D007356 ORTHO05D009247 5.1e-44 183.0 282 45.4
unitig_60.g25515 Utricularia gibba HOM05D007356 ORTHO05D009247 3.7e-42 176.8 372 36.0
Eucgr.J01469 Eucalyptus grandis HOM05D007356 ORTHO05D009247 2.4e-41 174.1 292 39.7
ATR0681G386 Amborella trichopoda HOM05D007356 ORTHO05D009247 1.5e-40 171.4 518 31.9
RcHm_v2.0_Chr2g0163141 Rosa chinensis HOM05D007356 ORTHO05D009247 5.0e-39 166.4 246 49.2
FAN09G4466 Fragaria x ananassa HOM05D007356 ORTHO05D009247 1.9e-38 164.5 248 47.6
AL3G11840 Arabidopsis lyrata HOM05D007356 ORTHO05D009247 9.1e-33 145.6 202 48.5
Ca_26179_v3 Cicer arietinum L. HOM05D007356 ORTHO05D009247 2.1e-29 134.4 228 44.7
Lj2A447T55 Lonicera japonica HOM05D007356 ORTHO05D009247 8.0e-29 132.5 104 71.2
Glyma.19G045202 Glycine max HOM05D007356 ORTHO05D009247 2.4e-25 120.9 202 42.6
Zm00001eb155990 Zea mays HOM05D007356 ORTHO05D009247 2.7e-24 117.5 362 32.0
Os01g0694200 Oryza sativa ssp. japonica HOM05D007356 ORTHO05D009247 1.3e-23 115.2 407 30.0
GSVIVG01036444001 Vitis vinifera HOM05D007356 ORTHO05D009247 9.4e-22 109.0 101 59.4
SEGI_12886 Sequoiadendron giganteum HOM05D007356 ORTHO05D009247 6.8e-20 102.8 217 33.2
CiPaw.03G059600 Carya illinoinensis HOM05D007356 ORTHO05D009247 9.8e-19 99.0 142 47.2
Lj2C447T11 Lonicera japonica HOM05D007356 ORTHO05D009247 9.8e-19 99.0 86 65.1
SMO145G0090 Selaginella moellendorffii HOM05D007356 ORTHO05D009247 6.1e-13 79.7 296 28.4
Mapoly0080s0048 Marchantia polymorpha HOM05D007356 ORTHO05D009247 7.5e-11 72.8 271 24.7
Sed0015927 Sechium edule HOM05D007356 ORTHO05D009247 9.8e-11 72.4 94 46.8
AagrBONN_evm.TU.Sc2ySwM_344.3211 Anthoceros agrestis HOM05D007356 ORTHO05D009247 1.3e-10 72.0 212 27.4
Pp3c9_14770 Physcomitrium patens HOM05D007356 ORTHO05D009247 2.2e-10 71.2 164 32.3
AUR62035477 Chenopodium quinoa HOM05D000128 ORTHO05D000059 1.2e-08 65.5 86 34.9
CBR_g44341 Chara braunii HOM05D007356 ORTHO05D009247 2.0e-08 64.7 83 38.6
Pp3c15_5150 Physcomitrium patens HOM05D007356 ORTHO05D009247 7.8e-08 62.8 100 40.0
Actinidia15867 Actinidia chinensis HOM05D007356 ORTHO05D009247 3.0e-07 60.8 298 27.2
AUR62025817 Chenopodium quinoa HOM05D036334 ORTHO05D009247 1.1e-06 58.9 75 45.3
Sc11g0008210 Simmondsia chinensis HOM05D007356 ORTHO05D009247 9.5e-06 55.8 78 44.9


User provided reference genes

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