Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.4e-238 828.2 488 100.0
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 3.0e-202 708.8 493 88.8
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 9.1e-135 484.6 501 61.3
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.9e-132 476.9 505 62.8
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 4.4e-129 465.7 349 89.1
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 1.3e-128 464.2 509 58.2
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.7e-126 456.4 416 68.0
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 1.5e-124 450.7 531 58.4
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 9.5e-116 421.4 423 58.6
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 1.4e-111 407.5 482 60.8
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 1.9e-108 397.1 422 58.5
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 3.4e-105 386.3 419 57.8
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 1.7e-104 384.0 419 56.8
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 2.2e-104 383.6 421 58.4
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 2.2e-104 383.6 411 58.2
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 3.7e-104 382.9 435 57.0
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 1.4e-103 380.9 416 58.2
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.9e-103 380.6 419 56.6
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 6.0e-102 375.6 415 54.0
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 3.0e-101 373.2 415 56.4
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 6.6e-101 372.1 424 53.5
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 6.6e-101 372.1 408 57.8
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 1.5e-100 370.9 414 57.0
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 1.9e-100 370.5 420 56.2
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 2.1e-99 367.1 510 50.8
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 4.7e-99 365.9 416 55.8
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 8.1e-99 365.2 369 60.7
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 8.1e-99 365.2 416 55.5
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 4.0e-98 362.8 421 56.3
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 4.0e-98 362.8 374 59.6
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 4.0e-98 362.8 416 55.5
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 5.2e-98 362.5 465 50.1
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 1.2e-97 361.3 431 55.7
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 4.9e-96 355.9 538 46.5
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.1e-95 354.8 337 62.9
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 5.4e-95 352.4 410 53.2
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 7.1e-95 352.1 535 46.4
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 2.1e-94 350.5 364 61.0
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 2.7e-94 350.1 424 54.5
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.5e-94 349.7 368 58.4
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 4.6e-94 349.4 436 51.6
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 3.0e-93 346.7 407 56.5
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 3.0e-93 346.7 536 44.8
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 5.1e-93 345.9 335 62.7
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 5.1e-93 345.9 349 62.5
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 8.6e-93 345.1 537 45.3
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 2.5e-92 343.6 435 49.0
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 4.3e-92 342.8 546 44.7
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 3.6e-91 339.7 436 48.6
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 1.8e-90 337.4 453 50.6
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.2e-89 334.7 206 80.1
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 1.3e-88 331.3 427 51.3
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 3.8e-88 329.7 396 49.7
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.1e-87 328.2 365 55.6
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 2.4e-87 327.0 426 51.6
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 5.4e-87 325.9 378 55.6
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.6e-86 322.8 426 51.9
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 4.6e-86 322.8 419 51.3
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.0e-85 321.6 440 49.8
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 1.3e-85 321.2 436 50.5
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 1.7e-85 320.9 442 50.2
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 2.3e-85 320.5 421 51.8
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 3.0e-85 320.1 398 53.3
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 5.1e-85 319.3 517 46.2
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 6.6e-85 318.9 380 54.2
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 1.5e-84 317.8 491 48.5
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.9e-84 317.4 445 49.4
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 3.3e-84 316.6 411 49.1
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 3.3e-84 316.6 429 49.7
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 4.8e-83 312.8 356 57.3
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 4.0e-82 309.7 430 46.5
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 1.5e-81 307.8 445 44.0
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 3.2e-79 300.1 420 49.3
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 9.3e-79 298.5 425 46.4
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.2e-78 298.1 416 49.3
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 8.7e-77 292.0 395 46.3
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 1.1e-76 291.6 387 52.7
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 4.3e-76 289.7 460 42.0
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 9.6e-76 288.5 440 44.5
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 1.3e-75 288.1 422 44.3
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 2.1e-75 287.3 431 46.4
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 3.6e-75 286.6 302 58.3
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.0e-74 283.1 435 44.6
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 2.6e-73 280.4 418 43.3
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 5.8e-73 279.3 470 38.7
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 7.6e-73 278.9 411 46.0
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 1.3e-72 278.1 473 43.3
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 2.9e-72 276.9 463 41.9
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 1.1e-71 275.0 447 42.1
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 1.4e-71 274.6 461 43.0
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 2.4e-71 273.9 459 43.8
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 4.2e-71 273.1 451 42.8
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 9.3e-71 271.9 385 44.9
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 2.1e-70 270.8 423 44.0
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 2.7e-70 270.4 441 42.0
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 4.6e-70 269.6 426 44.1
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 6.0e-70 269.2 337 50.7
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 1.3e-69 268.1 480 40.6
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 3.9e-69 266.5 418 44.0
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 4.3e-68 263.1 396 47.7
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 7.4e-68 262.3 427 42.2
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 2.1e-67 260.8 407 43.0
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 4.8e-67 259.6 373 47.5
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 2.4e-66 257.3 280 53.6
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 3.2e-63 246.9 196 59.7
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 5.5e-63 246.1 431 39.9
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 1.1e-60 238.4 315 56.2
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 3.8e-56 223.4 316 49.7
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 6.1e-54 216.1 170 62.4
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.7e-48 198.0 182 56.0
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.7e-48 198.0 145 66.2
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.7e-48 198.0 182 56.0
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.7e-41 172.6 323 39.6
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 3.0e-37 160.6 144 57.6
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 5.7e-36 156.4 112 67.0
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 4.8e-35 153.3 118 62.7
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 5.3e-34 149.8 81 85.2
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 7.0e-26 122.9 81 72.8
Actinidia26205 Actinidia chinensis HOM05D002505 ORTHO05D006559 3.5e-25 120.6 250 43.2
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 2.1e-22 111.3 160 35.6
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 4.7e-22 110.2 62 83.9
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 8.8e-21 105.9 148 37.2
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 1.2e-20 105.5 155 35.5
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 4.5e-17 93.6 286 38.5
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 4.2e-15 87.0 54 75.9
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 5.5e-15 86.7 54 75.9
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 5.5e-15 86.7 80 48.8
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 2.8e-14 84.3 63 63.5
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 5.2e-13 80.1 57 68.4
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 4.4e-12 77.0 185 37.3
QL04p094472 Quercus lobata HOM05D002505 ORTHO05D006559 8.0e-06 56.2 31 77.4
vmacro00844 Vaccinium macrocarpon HOM05D001094 ORTHO05D001050 8.0e-06 56.2 128 44.5


User provided reference genes

Program Settings