Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016678 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.7e-84 314.7 144 100.0
CSS0031502 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 5.2e-62 241.1 167 73.1
CSS0050453 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 6.8e-62 240.7 167 73.1
CSS0028931 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.2e-61 240.0 167 73.1
CSS0050092 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 2.6e-61 238.8 171 71.3
CSS0000454 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.4e-61 238.0 167 71.9
CSS0004487 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.3e-57 226.5 168 70.2
CSS0033656 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 3.7e-52 208.4 164 65.9
CSS0044724 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 1.0e-49 200.3 168 64.3
CSS0024873 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D014141 4.7e-47 191.4 168 61.9
Rhsim10G0191400 Rhododendron simsii HOM05D000649 ORTHO05D000513 6.4e-20 101.3 54 79.6
vmacro20607 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 3.5e-18 95.5 54 74.1
TAR628G0170 Trochodendron aralioides HOM05D000649 ORTHO05D000513 5.6e-16 88.2 54 66.7
Nn5g31051 Nelumbo nucifera HOM05D000649 ORTHO05D000513 1.3e-15 87.0 57 66.7
Cpa.g.sc26.10 Carica papaya HOM05D000649 ORTHO05D000513 4.8e-15 85.1 55 65.5
Lalb_Chr23g0265501 Lupinus albus HOM05D000649 ORTHO05D000513 1.1e-14 84.0 58 62.1
Atru.chr13.58 Acer truncatum HOM05D000649 ORTHO05D000513 2.4e-14 82.8 58 65.5
Manes.05G127900 Manihot esculenta HOM05D000649 ORTHO05D000513 3.1e-14 82.4 54 64.8
Hma1.2p1_0085F.1_g044350 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 4.0e-14 82.0 54 61.1
CiPaw.07G133300 Carya illinoinensis HOM05D000649 ORTHO05D000513 5.3e-14 81.6 55 63.6
Phvul.009G008600 Phaseolus vulgaris HOM05D000649 ORTHO05D000513 5.3e-14 81.6 58 60.3
THA.LOC104812008 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 5.3e-14 81.6 54 59.3
FAN23G1151 Fragaria x ananassa HOM05D000649 ORTHO05D000513 6.9e-14 81.3 54 63.0
FAN26G0796 Fragaria x ananassa HOM05D000649 ORTHO05D000513 6.9e-14 81.3 54 63.0
TAR376G0834 Trochodendron aralioides HOM05D000649 ORTHO05D000513 6.9e-14 81.3 54 59.3
FAN23G2635 Fragaria x ananassa HOM05D000649 ORTHO05D000513 9.0e-14 80.9 54 63.0
Potri.002G004600 Populus trichocarpa HOM05D000649 ORTHO05D000513 9.0e-14 80.9 58 62.1
Aqoxy6G02997 Aquilegia oxysepala HOM05D000649 ORTHO05D000513 1.2e-13 80.5 61 60.7
arahy.Tifrunner.gnm1.ann1.T7FLND Arachis hypogaea HOM05D000649 ORTHO05D000513 1.2e-13 80.5 55 63.6
FvH4_1g09990 Fragaria vesca HOM05D000649 ORTHO05D000513 1.2e-13 80.5 54 63.0
Nn6g31618 Nelumbo nucifera HOM05D000649 ORTHO05D000513 1.2e-13 80.5 57 57.9
Prupe.7G186900 Prunus persica HOM05D000649 ORTHO05D000513 2.0e-13 79.7 53 62.3
THA.LOC104813737 Tarenaya hassleriana HOM05D000649 ORTHO05D000513 2.0e-13 79.7 57 54.4
CiPaw.08G077300 Carya illinoinensis HOM05D000649 ORTHO05D000513 2.6e-13 79.3 52 63.5
TAR381G0051 Trochodendron aralioides HOM05D000649 ORTHO05D000513 2.6e-13 79.3 54 59.3
Actinidia22858 Actinidia chinensis HOM05D000649 ORTHO05D000513 3.4e-13 79.0 55 67.3
VMungo1309G1435 Vigna mungo HOM05D000649 ORTHO05D000513 3.4e-13 79.0 58 58.6
Eucgr.J02558 Eucalyptus grandis HOM05D000649 ORTHO05D000513 4.5e-13 78.6 57 59.6
Glyma.06G014300 Glycine max HOM05D000649 ORTHO05D000513 4.5e-13 78.6 58 58.6
Hma1.2p1_0699F.1_g205730 Hydrangea macrophylla HOM05D000649 ORTHO05D000513 4.5e-13 78.6 55 61.8
RcHm_v2.0_Chr2g0096781 Rosa chinensis HOM05D000649 ORTHO05D000513 4.5e-13 78.6 54 61.1
FAN28G0025 Fragaria x ananassa HOM05D000649 ORTHO05D000513 5.8e-13 78.2 54 61.1
Lj2C505G3 Lonicera japonica HOM05D000649 ORTHO05D000513 7.6e-13 77.8 61 55.7
PSO675G8806 Papaver somniferum HOM05D000649 ORTHO05D000513 7.6e-13 77.8 54 57.4
TWI36G1513 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 7.6e-13 77.8 55 65.5
Ca_04244_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 9.9e-13 77.4 56 58.9
Ca_15383_v3 Cicer arietinum L. HOM05D000649 ORTHO05D000513 9.9e-13 77.4 56 58.9
Prupe.5G005300 Prunus persica HOM05D000649 ORTHO05D000513 9.9e-13 77.4 55 56.4
MBI04_g31210_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 1.7e-12 76.6 52 59.6
Actinidia15526 Actinidia chinensis HOM05D000649 ORTHO05D000513 2.2e-12 76.3 53 60.4
Haze_22865 Corylus avellana HOM05D000649 ORTHO05D000513 2.2e-12 76.3 55 60.0
AL2G36600 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 2.9e-12 75.9 54 55.6
Nitab4.5_0010897g0010 Nicotiana tabacum HOM05D000649 ORTHO05D000513 3.8e-12 75.5 55 60.0
TWI56G0525 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 3.8e-12 75.5 55 63.6
Cfa014139 Carpinus fangiana HOM05D001065 ORTHO05D000513 4.9e-12 75.1 55 60.0
Lalb_Chr08g0246551 Lupinus albus HOM05D000649 ORTHO05D000513 4.9e-12 75.1 58 55.2
PGR083G0393 Punica granatum HOM05D000649 ORTHO05D000513 4.9e-12 75.1 104 42.3
Sabra02G0003100 Salix brachista HOM05D000649 ORTHO05D000513 4.9e-12 75.1 59 59.3
Sopen04g036410 Solanum pennellii HOM05D000649 ORTHO05D000513 4.9e-12 75.1 55 60.0
Actinidia17079 Actinidia chinensis HOM05D000649 ORTHO05D000513 6.4e-12 74.7 55 60.0
CARHR070020 Cardamine hirsuta HOM05D000649 ORTHO05D000513 6.4e-12 74.7 54 53.7
Lalb_Chr11g0061361 Lupinus albus HOM05D000649 ORTHO05D000513 6.4e-12 74.7 58 55.2
Medtr3g116130 Medicago truncatula HOM05D000649 ORTHO05D000513 6.4e-12 74.7 56 60.7
PGSC0003DMG400009999 Solanum tuberosum HOM05D000649 ORTHO05D000513 6.4e-12 74.7 55 60.0
Thhalv10018983m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 8.4e-12 74.3 54 55.6
PSO017G1691 Papaver somniferum HOM05D000649 ORTHO05D000513 8.4e-12 74.3 54 61.1
Glyma.04G014300 Glycine max HOM05D000649 ORTHO05D000513 1.1e-11 73.9 59 57.6
MBI01_g28406_MAGBIO Magnolia biondii HOM05D000649 ORTHO05D000513 1.1e-11 73.9 55 60.0
PSO541G2048 Papaver somniferum HOM05D000649 ORTHO05D000513 1.4e-11 73.6 95 40.0
Psat5g008440 Pisum sativum HOM05D000649 ORTHO05D000513 1.4e-11 73.6 55 58.2
CSS0025109 Camellia sinensis var. sinensis HOM05D000649 ORTHO05D000513 1.9e-11 73.2 55 58.2
Sc26g0004760 Simmondsia chinensis HOM05D000649 ORTHO05D000513 1.9e-11 73.2 57 54.4
AT1G76460 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 2.4e-11 72.8 54 51.9
Lj1g0016936 Lotus japonicus HOM05D000649 ORTHO05D000513 2.4e-11 72.8 58 53.4
PSO170G5065 Papaver somniferum HOM05D000649 ORTHO05D000513 2.4e-11 72.8 54 59.3
Carub.0002s2338 Capsella rubella HOM05D000649 ORTHO05D000513 3.2e-11 72.4 54 51.9
Dinv13765 Davidia involucrata HOM05D000649 ORTHO05D000513 3.2e-11 72.4 55 58.2
A07p42130 Brassica napus HOM05D000649 ORTHO05D000513 4.2e-11 72.0 54 53.7
Sp5g31630 Schrenkiella parvula HOM05D000649 ORTHO05D000513 4.2e-11 72.0 54 51.9
TWI12G0980 Tripterygium wilfordii HOM05D000649 ORTHO05D000513 4.2e-11 72.0 55 61.8
COL.COLO4_12296 Corchorus olitorius HOM05D000649 ORTHO05D000513 5.4e-11 71.6 55 56.4
MD06G1004000 Malus domestica HOM05D000649 ORTHO05D000513 5.4e-11 71.6 52 53.8
Cc10_g00240 Coffea canephora HOM05D000649 ORTHO05D000513 7.1e-11 71.2 55 52.7
Rhsim06G0003000 Rhododendron simsii HOM05D000649 ORTHO05D000513 7.1e-11 71.2 94 44.7
unitig_578.g16241 Utricularia gibba HOM05D000649 ORTHO05D000513 7.1e-11 71.2 54 51.9
Duzib093G1313 Durio zibethinus HOM05D000649 ORTHO05D000513 9.3e-11 70.9 55 58.2
Gohir.A01G101800 Gossypium hirsutum HOM05D000649 ORTHO05D000513 9.3e-11 70.9 55 56.4
QL02p015755 Quercus lobata HOM05D000649 ORTHO05D000513 9.3e-11 70.9 51 60.8
Gohir.D01G086900 Gossypium hirsutum HOM05D000649 ORTHO05D000513 1.2e-10 70.5 55 56.4
Gorai.002G112500 Gossypium raimondii HOM05D000649 ORTHO05D000513 1.2e-10 70.5 55 56.4
Thecc.08G099600 Theobroma cacao HOM05D000649 ORTHO05D000513 1.2e-10 70.5 58 53.4
AT1G20880 Arabidopsis thaliana HOM05D000649 ORTHO05D000513 1.6e-10 70.1 54 55.6
DCAR_016799 Daucus carota HOM05D000649 ORTHO05D000513 1.6e-10 70.1 52 59.6
arahy.Tifrunner.gnm1.ann1.63TST2 Arachis hypogaea HOM05D000649 ORTHO05D000513 2.1e-10 69.7 56 58.9
CDE05G1430 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 2.1e-10 69.7 54 48.1
AL1G33900 Arabidopsis lyrata HOM05D000649 ORTHO05D000513 2.7e-10 69.3 54 53.7
Thhalv10008444m.g Eutrema salsugineum HOM05D000649 ORTHO05D000513 2.7e-10 69.3 54 51.9
Manes.18G001800 Manihot esculenta HOM05D000649 ORTHO05D000513 2.7e-10 69.3 45 64.4
Sabra05G0198800 Salix brachista HOM05D000649 ORTHO05D000513 2.7e-10 69.3 56 57.1
Manes.02G116700 Manihot esculenta HOM05D000649 ORTHO05D000513 3.5e-10 68.9 55 58.2
Carub.0001s2035 Capsella rubella HOM05D000649 ORTHO05D000513 4.6e-10 68.6 54 51.9
MD00G1148300 Malus domestica HOM05D000649 ORTHO05D000513 7.9e-10 67.8 55 49.1
Potri.005G256700 Populus trichocarpa HOM05D000649 ORTHO05D000513 7.9e-10 67.8 59 52.5
BcaC08g47153 Brassica carinata HOM05D000649 ORTHO05D000513 1.0e-09 67.4 54 50.0
Oeu042506.1 Olea europaea HOM05D000649 ORTHO05D000513 1.0e-09 67.4 54 51.9
vmacro21765 Vaccinium macrocarpon HOM05D000649 ORTHO05D000513 1.0e-09 67.4 55 56.4
BcaC08g47242 Brassica carinata HOM05D000649 ORTHO05D000513 1.3e-09 67.0 54 50.0
C06p50700 Brassica napus HOM05D000649 ORTHO05D000513 1.3e-09 67.0 54 50.0
BolC6t40096H Brassica oleracea HOM05D000649 ORTHO05D000513 1.3e-09 67.0 54 50.0
BraA07t31742Z Brassica rapa HOM05D000649 ORTHO05D000513 1.3e-09 67.0 54 50.0
BraA08t34853Z Brassica rapa HOM05D000649 ORTHO05D000513 1.3e-09 67.0 54 51.9
Dinv05494 Davidia involucrata HOM05D000649 ORTHO05D000513 1.3e-09 67.0 55 50.9
Duzib116G0655 Durio zibethinus HOM05D000649 ORTHO05D000513 1.3e-09 67.0 51 52.9
Hma1.2p1_0711F.1_g207530 Hydrangea macrophylla HOM05D000649 ORTHO05D014141 1.3e-09 67.0 78 41.0
TPR.G38167 Trifolium pratense HOM05D000649 ORTHO05D000513 1.3e-09 67.0 49 59.2
Aa31LG7G5040 Aethionema arabicum HOM05D000649 ORTHO05D000513 1.8e-09 66.6 54 48.1
CDE05G1023 Ceratophyllum demersum HOM05D000649 ORTHO05D000513 1.8e-09 66.6 54 46.3
ClCG08G009160 Citrullus lanatus HOM05D000649 ORTHO05D000513 1.8e-09 66.6 51 52.9
Ciclev10003364m.g Citrus clementina HOM05D000649 ORTHO05D000513 1.8e-09 66.6 54 55.6
MD15G1228000 Malus domestica HOM05D000649 ORTHO05D000513 2.3e-09 66.2 45 62.2
Eucgr.I02201 Eucalyptus grandis HOM05D000649 ORTHO05D000513 3.9e-09 65.5 54 48.1
Aa31LG4G6550 Aethionema arabicum HOM05D000649 ORTHO05D000513 5.1e-09 65.1 55 49.1
BcaB03g14296 Brassica carinata HOM05D000649 ORTHO05D000513 5.1e-09 65.1 54 48.1
Ciclev10026337m.g Citrus clementina HOM05D000649 ORTHO05D000513 5.1e-09 65.1 47 53.2
SGA_v2.0_scaffold220G42643 Striga asiatica HOM05D000649 ORTHO05D000513 5.1e-09 65.1 55 52.7
MELO3C026514.2 Cucumis melo HOM05D000649 ORTHO05D000513 6.7e-09 64.7 51 51.0
CsaV3_6G035960 Cucumis sativus L. HOM05D000649 ORTHO05D000513 6.7e-09 64.7 51 51.0
DCAR_013943 Daucus carota HOM05D000649 ORTHO05D014141 6.7e-09 64.7 55 56.4
SalBow6G0043 Salvia bowleyana HOM05D000649 ORTHO05D000513 6.7e-09 64.7 55 50.9
ECA246G2133 Erigeron canadensis HOM05D000649 ORTHO05D000513 1.1e-08 63.9 66 45.5
Migut.N02989 Erythranthe guttata HOM05D000649 ORTHO05D000513 1.1e-08 63.9 57 47.4
HanXRQChr16g0532161 Helianthus annuus HOM05D000649 ORTHO05D000513 1.1e-08 63.9 59 50.8
Oeu039086.1 Olea europaea HOM05D000649 ORTHO05D014141 1.1e-08 63.9 55 54.5
BcaB07g32083 Brassica carinata HOM05D000649 ORTHO05D000513 1.9e-08 63.2 54 48.1
Sed0009990 Sechium edule HOM05D000649 ORTHO05D000513 1.9e-08 63.2 51 49.0
unitig_8.g4815 Utricularia gibba HOM05D000649 ORTHO05D000513 1.9e-08 63.2 57 42.1
ECA232G1614 Erigeron canadensis HOM05D000649 ORTHO05D000513 2.5e-08 62.8 55 54.5
MD02G1108800 Malus domestica HOM05D000649 ORTHO05D000513 2.5e-08 62.8 45 57.8
Eucgr.F03603 Eucalyptus grandis HOM05D000649 ORTHO05D000513 4.3e-08 62.0 68 45.6
RcHm_v2.0_Chr7g0216701 Rosa chinensis HOM05D000649 ORTHO05D000513 4.3e-08 62.0 56 48.2
HanXRQChr09g0241921 Helianthus annuus HOM05D000649 ORTHO05D000513 5.6e-08 61.6 55 54.5
CANSAT25G2852 Cannabis sativa HOM05D000649 ORTHO05D000513 7.4e-08 61.2 55 50.9
Oeu030360.2 Olea europaea HOM05D000649 ORTHO05D000513 7.4e-08 61.2 54 51.9
BcaC07g39059 Brassica carinata HOM05D000649 ORTHO05D000513 9.6e-08 60.8 52 46.2
Sed0025783 Sechium edule HOM05D000649 ORTHO05D000513 9.6e-08 60.8 51 49.0
AUR62035172 Chenopodium quinoa HOM05D000649 ORTHO05D000513 2.1e-07 59.7 57 49.1
SEGI_17423 Sequoiadendron giganteum HOM05D000649 ORTHO05D000513 2.1e-07 59.7 57 40.4
C08p20430 Brassica napus HOM05D000649 ORTHO05D000513 2.8e-07 59.3 52 44.2
BolC8t49672H Brassica oleracea HOM05D000649 ORTHO05D000513 2.8e-07 59.3 52 44.2
Lj4C242G3 Lonicera japonica HOM05D000649 ORTHO05D000513 2.8e-07 59.3 57 43.9
ATR0605G253 Amborella trichopoda HOM05D000649 ORTHO05D000513 4.8e-07 58.5 46 47.8
MSTRG.22081 Avicennia marina HOM05D000649 ORTHO05D000513 4.8e-07 58.5 57 45.6
BcaC06g34844 Brassica carinata HOM05D000649 ORTHO05D000513 4.8e-07 58.5 54 46.3
C07p22740 Brassica napus HOM05D000649 ORTHO05D000513 4.8e-07 58.5 54 46.3
BolC7t42806H Brassica oleracea HOM05D000649 ORTHO05D000513 4.8e-07 58.5 54 46.3
Haze_12233 Corylus avellana HOM05D000740 ORTHO05D003236 8.1e-07 57.8 44 70.5
Oeu013568.1 Olea europaea HOM05D000649 ORTHO05D000513 1.1e-06 57.4 53 45.3
A07p15430 Brassica napus HOM05D000649 ORTHO05D000513 1.4e-06 57.0 54 46.3
BraA07t29282Z Brassica rapa HOM05D000649 ORTHO05D000513 1.4e-06 57.0 54 46.3
FAN13G1717 Fragaria x ananassa HOM05D000649 ORTHO05D000513 1.4e-06 57.0 56 42.9
FvH4_5g26080 Fragaria vesca HOM05D000649 ORTHO05D000513 1.8e-06 56.6 56 42.9
FAN18G2507 Fragaria x ananassa HOM05D000649 ORTHO05D000513 2.4e-06 56.2 78 35.9
MSTRG.24518 Avicennia marina HOM05D000649 ORTHO05D000513 4.0e-06 55.5 57 40.4
Dinv15246 Davidia involucrata HOM05D000740 ORTHO05D003236 4.0e-06 55.5 38 76.3
CARHR021310 Cardamine hirsuta HOM05D000649 ORTHO05D000513 5.3e-06 55.1 48 52.1
DCAR_009860 Daucus carota HOM05D000649 ORTHO05D000513 5.3e-06 55.1 59 45.8
Lj4A240G32 Lonicera japonica HOM05D000649 ORTHO05D000513 5.3e-06 55.1 51 43.1
FAN04G1603 Fragaria x ananassa HOM05D000649 ORTHO05D000513 6.9e-06 54.7 56 41.1
FAN08G0068 Fragaria x ananassa HOM05D000649 ORTHO05D000513 6.9e-06 54.7 56 42.9


User provided reference genes

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