Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 0.0e+00 1416.0 729 100.0
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 0.0e+00 1365.1 713 98.7
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.5e-269 932.2 709 70.9
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 3.2e-253 878.6 733 65.2
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.3e-246 855.9 649 70.0
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.9e-243 844.0 699 64.8
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.0e-238 830.5 635 69.1
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 9.5e-229 797.3 703 62.3
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.4e-226 788.9 717 62.5
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 5.1e-222 775.0 711 62.6
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.1e-211 740.7 782 56.1
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 5.4e-192 675.2 738 53.9
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 5.1e-190 668.7 726 52.2
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.3e-182 643.3 706 55.5
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 7.2e-176 621.7 708 52.7
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 7.4e-173 611.7 729 49.4
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.6e-167 592.8 742 48.7
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.5e-165 587.4 725 50.6
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.5e-165 586.6 722 49.9
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 4.5e-162 575.9 687 50.7
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 3.0e-158 563.1 621 52.8
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 1.6e-154 550.8 619 53.0
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.7e-153 547.4 722 47.8
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 9.4e-152 541.6 699 48.4
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.2e-151 541.2 763 46.1
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 6.7e-150 535.4 717 46.4
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.5e-149 534.3 715 47.0
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.6e-149 533.5 753 44.8
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.7e-148 529.6 694 46.0
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.7e-148 529.6 694 46.0
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.2e-148 528.5 767 43.4
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 8.0e-143 511.9 726 47.0
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 5.2e-142 509.2 709 46.1
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 3.8e-137 493.0 717 44.9
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 2.5e-136 490.3 731 44.3
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.8e-134 481.9 721 42.7
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 2.1e-127 460.7 781 40.2
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.8e-123 447.6 740 39.9
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 5.9e-122 442.6 742 40.6
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 7.8e-114 415.6 720 41.9
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.0e-113 415.2 731 39.8
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.5e-112 411.4 726 40.4
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.4e-110 404.8 724 40.2
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.2e-109 401.7 733 39.0
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 7.5e-109 399.1 734 38.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 1.3e-108 398.3 711 39.8
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.7e-108 397.9 741 38.1
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 2.2e-108 397.5 732 39.3
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 3.2e-107 393.7 751 37.5
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 3.5e-106 390.2 347 58.2
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 2.3e-105 387.5 757 37.5
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 5.1e-105 386.3 742 37.2
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 7.3e-104 382.5 766 37.7
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 8.1e-103 379.0 738 39.0
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.3e-102 377.5 751 37.4
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 4.0e-102 376.7 720 37.4
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 8.9e-102 375.6 737 37.7
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.2e-101 375.2 746 37.0
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 2.6e-101 374.0 756 35.4
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 5.8e-101 372.9 763 36.8
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.3e-100 371.7 744 37.4
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.2e-100 370.9 778 36.0
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.9e-100 369.8 757 37.3
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.9e-99 367.9 729 38.8
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.2e-99 365.5 714 39.4
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 9.2e-99 365.5 739 38.2
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 3.5e-98 363.6 742 38.3
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.0e-97 362.1 764 36.9
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.7e-97 361.3 739 36.9
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.5e-96 358.2 751 36.1
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 7.3e-96 355.9 607 39.0
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.6e-95 354.8 745 36.9
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 3.6e-95 353.6 554 40.8
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.4e-94 351.7 607 38.6
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.0e-93 347.8 698 37.8
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 5.8e-93 346.3 733 36.4
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.3e-92 345.1 683 40.0
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 2.2e-92 344.4 733 35.6
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.2e-91 340.5 744 37.1
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 4.2e-91 340.1 732 37.7
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 7.1e-91 339.3 741 34.7
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 4.6e-90 336.7 752 35.5
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 4.6e-90 336.7 734 36.1
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 6.0e-90 336.3 549 39.2
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 7.8e-90 335.9 735 35.8
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 7.8e-90 335.9 769 34.3
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 2.3e-89 334.3 723 35.8
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 6.6e-89 332.8 727 36.5
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.1e-88 332.0 737 35.7
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 1.9e-88 331.3 737 36.8
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 3.3e-88 330.5 736 35.1
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.3e-88 329.3 742 35.4
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 9.6e-88 328.9 744 35.1
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.3e-87 328.6 743 34.9
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.3e-87 328.6 742 35.4
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.4e-86 325.1 749 35.6
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.4e-86 324.3 752 34.3
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-85 321.6 756 35.2
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 6.4e-84 316.2 652 35.6
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 7.1e-83 312.8 746 33.0
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.2e-82 312.0 742 35.4
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 2.1e-82 311.2 590 38.0
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 6.0e-82 309.7 499 41.7
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.3e-81 308.5 739 33.2
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.0e-81 307.4 741 33.2
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.7e-81 305.8 755 34.3
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 3.6e-79 300.4 729 33.5
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 4.8e-79 300.1 749 32.6
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 4.8e-79 300.1 740 32.7
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 6.2e-79 299.7 760 32.9
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 2.4e-78 297.7 764 33.2
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.2e-77 295.4 742 32.6
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 2.4e-75 287.7 727 33.0
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 4.2e-75 287.0 740 35.1
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 9.3e-75 285.8 728 34.8
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.6e-74 285.0 738 34.0
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 2.1e-74 284.6 737 32.8
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 2.5e-72 277.7 741 33.7
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.6e-71 275.0 500 35.8
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.4e-70 271.9 741 32.4
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 6.9e-70 269.6 521 37.0
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 1.2e-69 268.9 730 33.7
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 2.0e-69 268.1 731 33.4
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 2.0e-69 268.1 779 31.8
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 4.9e-68 263.5 550 36.2
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 8.4e-68 262.7 737 32.6
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 5.5e-67 260.0 749 32.0
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.9e-64 251.5 691 34.0
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.9e-64 251.5 499 37.9
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 4.3e-64 250.4 732 32.8
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 3.7e-63 247.3 700 32.1
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 4.8e-63 246.9 701 32.4
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 8.2e-63 246.1 686 31.6
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 5.3e-62 243.4 703 31.2
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 1.7e-60 238.4 709 31.5
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.7e-60 238.4 605 33.1
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 2.2e-60 238.0 705 30.2
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 3.3e-56 224.2 752 30.2
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.3e-55 222.2 341 39.9
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.8e-55 221.1 570 31.8
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 1.0e-52 212.6 521 33.6
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 2.9e-52 211.1 480 34.2
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 2.5e-51 208.0 639 32.4
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 7.2e-51 206.5 467 33.6
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 1.2e-50 205.7 607 30.8
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 9.7e-48 196.1 597 28.3
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 4.8e-47 193.7 565 30.8
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 2.4e-46 191.4 531 32.2
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 3.1e-46 191.0 532 31.6
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.2e-45 189.1 608 31.4
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.5e-45 188.7 204 54.4
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.5e-45 188.7 204 54.4
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 7.2e-43 179.9 546 30.0
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.1e-40 172.6 474 29.5
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.1e-38 166.0 707 29.1
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.0e-36 159.5 712 28.8
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 4.8e-31 140.6 666 27.0
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 4.4e-24 117.5 650 25.1
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 1.0e-12 79.7 289 29.1
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 5.0e-12 77.4 218 29.8


User provided reference genes

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