Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 1.2e-122 443.4 258 100.0
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.7e-84 316.6 235 74.0
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 1.2e-82 310.5 256 68.0
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.1e-81 307.4 216 75.9
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 4.4e-80 302.0 233 73.8
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 1.3e-79 300.4 251 73.3
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 9.6e-75 284.3 237 68.4
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 2.8e-74 282.7 214 71.0
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 4.4e-72 275.4 216 70.8
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 3.3e-67 259.2 226 64.2
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 3.6e-66 255.8 212 67.0
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 2.4e-65 253.1 228 61.0
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 3.1e-65 252.7 224 62.9
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.2e-64 250.8 225 64.0
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 1.5e-64 250.4 227 60.8
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 9.9e-64 247.7 235 62.6
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 4.9e-63 245.4 221 60.2
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 8.4e-63 244.6 226 61.5
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 8.4e-63 244.6 227 60.8
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.4e-62 243.0 238 63.0
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 4.2e-62 242.3 236 60.6
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 5.5e-62 241.9 231 62.3
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 5.5e-62 241.9 235 58.3
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 7.1e-62 241.5 218 64.2
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.6e-61 240.4 210 65.2
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.6e-61 240.4 222 63.5
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 2.7e-61 239.6 232 60.8
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 3.5e-61 239.2 218 62.8
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 3.5e-61 239.2 233 59.7
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 4.6e-61 238.8 228 61.0
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.0e-61 238.4 226 59.7
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 7.9e-61 238.0 226 60.2
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 7.9e-61 238.0 220 62.3
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 1.0e-60 237.7 226 60.2
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 1.0e-60 237.7 237 62.0
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.3e-60 237.3 233 59.2
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 2.3e-60 236.5 233 60.1
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 3.0e-60 236.1 211 64.5
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 3.0e-60 236.1 229 58.1
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.9e-60 235.7 232 59.1
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 6.7e-60 235.0 232 59.9
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 6.7e-60 235.0 236 58.5
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 2.5e-59 233.0 233 58.8
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 5.6e-59 231.9 329 46.8
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 1.3e-58 230.7 212 62.7
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 8.1e-58 228.0 235 58.3
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.8e-57 226.9 215 61.9
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 2.4e-57 226.5 232 57.3
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 9.0e-57 224.6 228 60.1
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 3.4e-56 222.6 224 59.4
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 4.5e-56 222.2 215 61.9
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 5.8e-56 221.9 245 56.3
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 5.8e-56 221.9 217 60.4
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 4.9e-55 218.8 251 53.8
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 4.9e-55 218.8 229 57.2
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 8.4e-55 218.0 149 77.9
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.1e-54 217.6 232 57.3
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 1.1e-54 217.6 234 56.4
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.4e-54 217.2 237 57.0
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 1.9e-54 216.9 227 56.4
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 3.2e-54 216.1 232 55.6
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 1.8e-52 210.3 210 59.5
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 2.3e-52 209.9 246 54.5
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 3.9e-52 209.1 214 59.3
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 3.3e-51 206.1 219 55.7
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 5.7e-51 205.3 213 58.2
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 3.7e-50 202.6 224 54.0
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 6.3e-50 201.8 242 53.7
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 1.8e-49 200.3 232 52.6
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 6.9e-49 198.4 254 48.8
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 1.2e-48 197.6 252 51.6
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 3.4e-48 196.1 265 47.9
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 7.6e-48 194.9 210 55.2
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 2.2e-47 193.4 271 48.0
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 2.2e-47 193.4 282 45.7
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.8e-47 192.6 234 52.1
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 8.4e-47 191.4 270 47.0
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 8.4e-47 191.4 236 54.7
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 8.4e-47 191.4 172 61.0
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.4e-46 190.7 270 47.4
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 1.4e-46 190.7 260 48.8
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 2.5e-46 189.9 149 65.1
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.6e-45 187.2 213 54.0
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 2.1e-45 186.8 149 69.1
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 2.1e-45 186.8 179 62.6
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 3.5e-45 186.0 187 58.8
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 4.6e-45 185.7 210 52.4
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.3e-44 184.1 281 43.4
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 3.0e-44 183.0 205 56.1
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 8.7e-44 181.4 274 45.6
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.5e-43 180.6 214 52.8
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 7.4e-43 178.3 220 48.6
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 1.3e-42 177.6 268 46.6
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.8e-42 176.4 230 48.3
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 8.2e-42 174.9 260 45.4
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 1.1e-41 174.5 218 49.5
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.8e-41 173.7 233 48.5
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 3.1e-41 172.9 255 45.1
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 6.9e-41 171.8 233 48.1
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 1.2e-40 171.0 198 49.5
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 2.0e-40 170.2 208 49.5
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.6e-40 169.9 228 49.1
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.4e-40 169.5 220 48.2
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 1.0e-39 167.9 213 48.4
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 1.9e-38 163.7 231 48.1
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 3.2e-38 162.9 239 46.0
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 4.2e-38 162.5 235 46.8
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 5.5e-38 162.2 234 48.3
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 5.5e-38 162.2 228 48.2
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 5.5e-38 162.2 234 48.3
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 2.7e-37 159.8 188 53.2
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 6.1e-37 158.7 230 47.4
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 6.1e-37 158.7 230 46.1
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 3.0e-36 156.4 174 52.9
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 9.7e-35 151.4 231 46.3
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 6.3e-34 148.7 224 43.3
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 8.2e-34 148.3 225 44.0
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.1e-33 147.9 274 39.8
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 6.9e-33 145.2 176 51.1
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 2.9e-31 139.8 154 53.2
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 2.9e-31 139.8 165 49.7
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 2.5e-30 136.7 201 46.3
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 3.2e-30 136.3 168 51.2
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 9.4e-30 134.8 208 41.3
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 7.9e-29 131.7 256 41.0
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 7.9e-29 131.7 256 41.0
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 7.9e-29 131.7 115 67.0
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.4e-28 131.0 176 48.3
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 3.9e-28 129.4 246 39.0
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 1.1e-27 127.9 177 48.0
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.1e-27 127.9 236 40.3
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 7.4e-27 125.2 168 45.8
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 2.8e-26 123.2 210 42.9
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 2.8e-26 123.2 210 42.9
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 8.2e-26 121.7 152 50.0
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 1.7e-23 114.0 198 43.4
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.9e-22 110.5 204 41.7
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 2.7e-21 106.7 73 72.6
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 3.6e-21 106.3 81 67.9
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 1.4e-20 104.4 186 42.5
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 2.3e-20 103.6 186 43.0
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 4.0e-20 102.8 146 47.3
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 7.5e-19 98.6 162 42.6
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 2.8e-18 96.7 166 43.4
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 1.1e-17 94.7 188 39.9
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-17 92.8 63 71.4
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-17 92.8 63 71.4
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-17 92.8 63 71.4
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 4.1e-17 92.8 63 71.4
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 1.6e-16 90.9 60 73.3
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 2.0e-16 90.5 58 74.1
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 2.7e-16 90.1 56 78.6
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 7.7e-16 88.6 56 76.8
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 7.7e-16 88.6 56 76.8
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 7.7e-16 88.6 144 41.0
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 1.0e-15 88.2 184 40.2
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 3.8e-15 86.3 184 38.6
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.5e-14 84.3 106 50.0
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 1.9e-14 84.0 205 37.1
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.5e-14 83.6 51 78.4
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 7.2e-14 82.0 54 74.1
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 6.1e-13 79.0 51 76.5
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.0e-12 76.3 90 53.3
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 5.7e-11 72.4 46 73.9
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 5.7e-11 72.4 46 73.9
Dinv09506 Davidia involucrata HOM05D003513 ORTHO05D004660 1.4e-09 67.8 71 54.9
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 2.4e-09 67.0 128 39.8
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.5e-08 62.8 76 52.6
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 5.0e-07 59.3 38 71.1
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 2.5e-06 57.0 158 32.9
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 9.4e-06 55.1 73 46.6


User provided reference genes

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