Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016513 Camellia sinensis var. sinensis HOM05D025959 ORTHO05D112824 2.7e-74 282.0 147 100.0
CSS0017064 Camellia sinensis var. sinensis HOM05D025959 ORTHO05D111070 7.4e-48 194.1 131 80.9
CSS0020093 Camellia sinensis var. sinensis HOM05D025959 ORTHO05D110648 2.1e-42 176.0 144 72.2
CSS0007523 Camellia sinensis var. sinensis HOM05D025959 ORTHO05D111461 1.7e-15 86.7 128 46.1
CSS0023667 Camellia sinensis var. sinensis HOM05D001021 ORTHO05D000894 1.3e-07 60.5 34 88.2
Actinidia13208 Actinidia chinensis HOM05D001021 ORTHO05D000894 1.7e-07 60.1 31 96.8
Gohir.D05G059400 Gossypium hirsutum HOM05D001021 ORTHO05D000894 2.2e-07 59.7 42 73.8
Gorai.009G060500 Gossypium raimondii HOM05D001021 ORTHO05D000894 2.2e-07 59.7 42 73.8
Actinidia14108 Actinidia chinensis HOM05D001021 ORTHO05D000894 2.9e-07 59.3 34 85.3
Dinv03422 Davidia involucrata HOM05D001021 ORTHO05D000894 2.9e-07 59.3 34 85.3
Gohir.A06G100300 Gossypium hirsutum HOM05D001021 ORTHO05D000894 2.9e-07 59.3 34 85.3
Cfa013093 Carpinus fangiana HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
CiPaw.07G227500 Carya illinoinensis HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
CiPaw.08G007800 Carya illinoinensis HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
Haze_21450 Corylus avellana HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
Duzib168G0044 Durio zibethinus HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
Eucgr.C02720 Eucalyptus grandis HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
Gohir.A05G057300 Gossypium hirsutum HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
Gohir.D06G102400 Gossypium hirsutum HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
Gorai.010G117400 Gossypium raimondii HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
Peaxi162Scf00116g00313 Petunia axillaris HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 82.4
Potri.006G260200 Populus trichocarpa HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
Rhsim07G0162300 Rhododendron simsii HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
Thecc.09G018600 Theobroma cacao HOM05D001021 ORTHO05D000894 3.7e-07 58.9 34 85.3
ClCG08G013590 Citrullus lanatus HOM05D001021 ORTHO05D000894 4.9e-07 58.5 34 82.4
CsaV3_2G032340 Cucumis sativus L. HOM05D001021 ORTHO05D000894 4.9e-07 58.5 34 82.4
Lj7C729T7 Lonicera japonica HOM05D001021 ORTHO05D000894 4.9e-07 58.5 34 79.4
Nitab4.5_0000486g0030 Nicotiana tabacum HOM05D001021 ORTHO05D000894 6.4e-07 58.2 34 79.4
Nitab4.5_0009538g0010 Nicotiana tabacum HOM05D001021 ORTHO05D000894 6.4e-07 58.2 34 79.4
vmacro05147 Vaccinium macrocarpon HOM05D001021 ORTHO05D000894 6.4e-07 58.2 34 82.4
CANSAT25G2285 Cannabis sativa HOM05D001021 ORTHO05D000894 8.3e-07 57.8 34 82.4
Dinv06491 Davidia involucrata HOM05D001021 ORTHO05D000894 8.3e-07 57.8 34 82.4
Prupe.1G390500 Prunus persica HOM05D001021 ORTHO05D000894 8.3e-07 57.8 34 82.4
GSVIVG01035914001 Vitis vinifera HOM05D001021 ORTHO05D000894 8.3e-07 57.8 30 96.7
CAN.G6.30 Capsicum annuum HOM05D001021 ORTHO05D000894 1.1e-06 57.4 34 76.5
COL.COLO4_18928 Corchorus olitorius HOM05D001021 ORTHO05D000894 1.1e-06 57.4 31 90.3
Manes.16G126700 Manihot esculenta HOM05D001021 ORTHO05D000894 1.1e-06 57.4 34 79.4
Potri.018G022200 Populus trichocarpa HOM05D001021 ORTHO05D000894 1.1e-06 57.4 34 85.3
Sabra06G0203200 Salix brachista HOM05D001021 ORTHO05D000894 1.1e-06 57.4 34 82.4
SabraUnG0004900 Salix brachista HOM05D001021 ORTHO05D000894 1.1e-06 57.4 34 82.4
Phvul.001G047001 Phaseolus vulgaris HOM05D001021 ORTHO05D000894 1.4e-06 57.0 31 90.3
Solyc08g041870.3 Solanum lycopersicum HOM05D001021 ORTHO05D000894 1.4e-06 57.0 31 83.9
Sopen08g012080 Solanum pennellii HOM05D001021 ORTHO05D000894 1.4e-06 57.0 31 83.9
PGSC0003DMG400029897 Solanum tuberosum HOM05D001021 ORTHO05D000894 1.4e-06 57.0 31 83.9
CSS0037024 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.9e-06 56.6 32 78.1
Cpa.g.sc532.4 Carica papaya HOM05D001021 ORTHO05D000894 1.9e-06 56.6 34 82.4
MELO3C011284.2 Cucumis melo HOM05D001021 ORTHO05D000894 1.9e-06 56.6 34 79.4
FAN20G0577 Fragaria x ananassa HOM05D001021 ORTHO05D000894 1.9e-06 56.6 34 79.4
DCAR_003005 Daucus carota HOM05D001021 ORTHO05D000894 2.4e-06 56.2 34 82.4
HanXRQChr02g0050121 Helianthus annuus HOM05D001021 ORTHO05D000894 2.4e-06 56.2 34 76.5
Oeu012639.1 Olea europaea HOM05D001021 ORTHO05D000894 2.4e-06 56.2 34 82.4
RcHm_v2.0_Chr6g0299821 Rosa chinensis HOM05D001021 ORTHO05D000894 2.4e-06 56.2 34 79.4
Atru.chr7.2508 Acer truncatum HOM05D001021 ORTHO05D000894 3.2e-06 55.8 34 76.5
Atru.chr7.2509 Acer truncatum HOM05D001021 ORTHO05D000894 3.2e-06 55.8 34 76.5
Cc08_g00120 Coffea canephora HOM05D001021 ORTHO05D000894 3.2e-06 55.8 31 90.3
Migut.A00003 Erythranthe guttata HOM05D001021 ORTHO05D000894 3.2e-06 55.8 34 82.4
HanXRQChr13g0403701 Helianthus annuus HOM05D001021 ORTHO05D000894 3.2e-06 55.8 34 73.5
Lj5g0012884 Lotus japonicus HOM05D001021 ORTHO05D000894 3.2e-06 55.8 31 87.1
Ca_13048_v3 Cicer arietinum L. HOM05D001021 ORTHO05D000894 4.1e-06 55.5 31 87.1
Glyma.14G111800 Glycine max HOM05D001021 ORTHO05D000894 4.1e-06 55.5 31 87.1
Glyma.17G216000 Glycine max HOM05D001021 ORTHO05D000894 4.1e-06 55.5 31 87.1
Lsat_1_v5_gn_6_18741 Lactuca sativa HOM05D001021 ORTHO05D000894 4.1e-06 55.5 34 73.5
Lalb_Chr22g0361431 Lupinus albus HOM05D001021 ORTHO05D000894 4.1e-06 55.5 31 87.1
Medtr1g013050 Medicago truncatula HOM05D001021 ORTHO05D000894 4.1e-06 55.5 31 87.1
TWI32G1085 Tripterygium wilfordii HOM05D001021 ORTHO05D000894 4.1e-06 55.5 34 79.4
TWI34G0456 Tripterygium wilfordii HOM05D001021 ORTHO05D000894 4.1e-06 55.5 34 79.4
VMungo0647G0368 Vigna mungo HOM05D001021 ORTHO05D000894 4.1e-06 55.5 31 87.1
FvH4_2g40770 Fragaria vesca HOM05D001021 ORTHO05D000894 5.4e-06 55.1 34 76.5
MD08G1060300 Malus domestica HOM05D001021 ORTHO05D000894 5.4e-06 55.1 34 79.4
ATR0629G123 Amborella trichopoda HOM05D001021 ORTHO05D000894 7.0e-06 54.7 31 83.9
MSTRG.26034 Avicennia marina HOM05D001021 ORTHO05D000894 7.0e-06 54.7 34 79.4
Nn8g39753 Nelumbo nucifera HOM05D001021 ORTHO05D000894 7.0e-06 54.7 34 79.4
QL02p020044 Quercus lobata HOM05D001021 ORTHO05D000894 7.0e-06 54.7 34 76.5
Sc23g0006500 Simmondsia chinensis HOM05D001021 ORTHO05D000894 7.0e-06 54.7 34 76.5
Aa31LG2G18060 Aethionema arabicum HOM05D001021 ORTHO05D000894 9.2e-06 54.3 34 73.5
arahy.Tifrunner.gnm1.ann1.6D88CF Arachis hypogaea HOM05D001021 ORTHO05D000894 9.2e-06 54.3 31 83.9
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 9.2e-06 54.3 28 89.3
Hund03475 Selenicereus undatus HOM05D001021 ORTHO05D000894 9.2e-06 54.3 34 73.5
TPR.G38865 Trifolium pratense HOM05D001021 ORTHO05D000894 9.2e-06 54.3 31 83.9


User provided reference genes

Program Settings