Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 5.2e-78 294.3 144 100.0
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 9.7e-77 290.0 144 98.6
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 9.7e-77 290.0 144 98.6
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 2.2e-76 288.9 144 97.9
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 97.9
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 4.8e-76 287.7 144 97.2
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 6.3e-76 287.3 144 97.9
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 8.2e-76 287.0 144 96.5
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 96.5
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 95.8
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 95.8
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 3.1e-75 285.0 144 95.8
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 95.8
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 96.5
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 4.1e-75 284.6 143 95.8
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 5.3e-75 284.3 144 96.5
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 5.3e-75 284.3 144 95.8
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 5.3e-75 284.3 144 95.8
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 7.0e-75 283.9 141 95.7
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 95.8
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 95.1
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 94.4
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.1
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.8
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 94.4
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 9.1e-75 283.5 141 96.5
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 95.8
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.2e-74 283.1 144 95.8
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 1.2e-74 283.1 143 96.5
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.6e-74 282.7 141 96.5
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.6e-74 282.7 142 95.8
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 1.6e-74 282.7 141 96.5
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 94.4
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 1.6e-74 282.7 144 94.4
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 2.0e-74 282.3 144 95.8
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 93.8
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 4.5e-74 281.2 144 95.1
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 94.4
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 5.9e-74 280.8 141 96.5
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 5.9e-74 280.8 141 96.5
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 93.8
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 95.1
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 95.1
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 93.1
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 93.1
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 95.1
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 93.8
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 92.4
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 92.4
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 94.4
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 93.8
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 93.8
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 91.7
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.1
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.8
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 3.8e-73 278.1 141 94.3
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 5.0e-73 277.7 141 94.3
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 5.0e-73 277.7 141 94.3
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 5.0e-73 277.7 141 94.3
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 93.1
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 5.0e-73 277.7 141 94.3
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 5.0e-73 277.7 141 95.7
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 6.5e-73 277.3 141 94.3
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 91.7
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 6.5e-73 277.3 141 94.3
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 91.7
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 91.7
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 92.4
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 92.4
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 9.4e-72 273.5 142 90.8
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.0e-70 268.5 154 88.3
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 4.0e-70 268.1 141 91.5
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 8.8e-70 266.9 141 90.8
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.5e-69 266.2 170 78.8
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.6e-69 265.4 167 79.6
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 3.4e-69 265.0 138 89.9
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 3.4e-69 265.0 142 89.4
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 4.4e-69 264.6 140 90.0
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 7.5e-69 263.8 140 88.6
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 9.8e-69 263.5 140 89.3
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 9.8e-69 263.5 140 88.6
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 9.8e-69 263.5 140 88.6
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 9.8e-69 263.5 141 90.1
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 9.8e-69 263.5 144 85.4
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 9.8e-69 263.5 140 90.7
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 9.8e-69 263.5 138 89.1
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.7e-68 262.7 140 90.0
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 2.2e-68 262.3 140 88.6
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 2.2e-68 262.3 137 90.5
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 2.2e-68 262.3 130 96.2
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 6.3e-68 260.8 140 88.6
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 5.4e-67 257.7 140 86.4
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 7.0e-67 257.3 208 67.3
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 9.1e-67 256.9 140 85.7
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 3.5e-66 255.0 140 85.7
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 3.5e-66 255.0 140 85.7
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 7.7e-66 253.8 138 84.8
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 84.3
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 84.3
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 2.3e-65 252.3 138 86.2
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 86.4
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 86.4
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 86.4
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 86.4
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 85.7
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 8.6e-65 250.4 202 66.3
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.9e-64 249.2 168 74.4
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.9e-64 249.2 137 87.6
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.8e-63 245.4 156 78.8
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 1.4e-62 243.0 138 81.9
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 9.8e-61 236.9 141 83.0
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 4.9e-60 234.6 129 85.3
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.1e-59 233.4 140 80.7
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 3.1e-59 231.9 144 72.9
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 7.3e-56 220.7 142 70.4
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 9.8e-53 210.3 114 86.8
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.7e-52 209.5 122 81.1
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.1e-51 206.8 160 66.9
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 2.0e-50 202.6 138 63.8
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 4.6e-50 201.4 121 83.5
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 7.8e-50 200.7 136 64.7
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 1.9e-48 196.1 99 94.9
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 1.6e-47 193.0 97 92.8
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 2.9e-44 182.2 117 78.6
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 3.9e-33 145.2 74 97.3
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.6e-31 138.7 74 91.9
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.1e-30 135.6 74 89.2
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 7.6e-29 131.0 139 48.2
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 3.8e-28 128.6 74 83.8
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 7.1e-27 124.4 140 50.7
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 3.9e-17 92.0 43 95.3
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 5.8e-13 78.2 161 33.5
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 1.3e-12 77.0 155 32.3
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 4.9e-12 75.1 117 37.6
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 6.4e-12 74.7 53 66.0
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 7.1e-11 71.2 44 77.3
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 1.6e-07 60.1 36 69.4
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.1e-07 59.7 133 30.1
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 9.0e-06 54.3 83 37.3


User provided reference genes

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