Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016496 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.9e-74 282.3 133 100.0
CSS0031684 Camellia sinensis var. sinensis HOM05D006442 ORTHO05D007980 1.0e-72 276.6 133 97.7
Dinv43911 Davidia involucrata HOM05D006442 ORTHO05D007980 4.2e-66 254.6 133 88.0
Prupe.2G007200 Prunus persica HOM05D006442 ORTHO05D007980 1.8e-64 249.2 133 86.5
MD07G1004900 Malus domestica HOM05D006442 ORTHO05D007980 8.7e-64 246.9 133 85.0
Actinidia21568 Actinidia chinensis HOM05D006442 ORTHO05D007980 1.1e-63 246.5 129 86.0
Rhsim07G0053100 Rhododendron simsii HOM05D006442 ORTHO05D007980 2.5e-63 245.4 133 83.5
GSVIVG01032037001 Vitis vinifera HOM05D006442 ORTHO05D007980 2.5e-63 245.4 133 84.2
Glyma.15G271700 Glycine max HOM05D006442 ORTHO05D007980 3.3e-63 245.0 133 84.2
Eucgr.G03402 Eucalyptus grandis HOM05D006442 ORTHO05D007980 4.3e-63 244.6 133 83.5
Haze_03245 Corylus avellana HOM05D006442 ORTHO05D007980 1.3e-62 243.0 133 82.0
Hma1.2p1_0010F.1_g007050 Hydrangea macrophylla HOM05D006442 ORTHO05D007980 1.3e-62 243.0 130 84.6
VMungo1080G0583 Vigna mungo HOM05D006442 ORTHO05D007980 1.3e-62 243.0 133 84.2
Cfa010728 Carpinus fangiana HOM05D006442 ORTHO05D007980 2.2e-62 242.3 133 80.5
Lj3g0007274 Lotus japonicus HOM05D006442 ORTHO05D007980 6.3e-62 240.7 133 82.0
FvH4_7g00510 Fragaria vesca HOM05D006442 ORTHO05D007980 8.2e-62 240.4 133 82.0
FAN06G2479 Fragaria x ananassa HOM05D006442 ORTHO05D007980 8.2e-62 240.4 133 82.0
FAN10G1890 Fragaria x ananassa HOM05D006442 ORTHO05D007980 8.2e-62 240.4 133 82.0
arahy.Tifrunner.gnm1.ann1.9R1925 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.1e-61 240.0 133 80.5
arahy.Tifrunner.gnm1.ann1.A55RA3 Arachis hypogaea HOM05D006442 ORTHO05D007980 1.1e-61 240.0 133 80.5
FAN03G1462 Fragaria x ananassa HOM05D006442 ORTHO05D007980 1.8e-61 239.2 133 81.2
TPR.G12183 Trifolium pratense HOM05D006442 ORTHO05D007980 2.4e-61 238.8 133 82.0
RcHm_v2.0_Chr1g0314301 Rosa chinensis HOM05D006442 ORTHO05D007980 3.1e-61 238.4 133 81.2
Glyma.08G151500 Glycine max HOM05D006442 ORTHO05D007980 4.1e-61 238.0 133 82.0
Manes.10G148300 Manihot esculenta HOM05D006442 ORTHO05D007980 5.3e-61 237.7 133 81.2
Oeu064276.1 Olea europaea HOM05D006442 ORTHO05D007980 6.9e-61 237.3 133 78.9
Potri.001G225500 Populus trichocarpa HOM05D006442 ORTHO05D007980 6.9e-61 237.3 133 82.0
Actinidia20688 Actinidia chinensis HOM05D006442 ORTHO05D007980 9.0e-61 236.9 129 82.9
Oeu013593.2 Olea europaea HOM05D006442 ORTHO05D007980 1.2e-60 236.5 133 78.9
Cc02_g27370 Coffea canephora HOM05D006442 ORTHO05D007980 1.5e-60 236.1 130 81.5
CiPaw.12G060500 Carya illinoinensis HOM05D006442 ORTHO05D007980 3.4e-60 235.0 131 80.2
Ciclev10033058m.g Citrus clementina HOM05D006442 ORTHO05D007980 3.4e-60 235.0 130 81.5
MSTRG.28085 Avicennia marina HOM05D006442 ORTHO05D007980 4.5e-60 234.6 133 78.9
Cc02_g27340 Coffea canephora HOM05D006442 ORTHO05D007980 4.5e-60 234.6 130 80.0
Duzib133G0004 Durio zibethinus HOM05D006442 ORTHO05D007980 4.5e-60 234.6 135 78.5
Lsat_1_v5_gn_8_7620 Lactuca sativa HOM05D006442 ORTHO05D007980 4.5e-60 234.6 133 81.2
TAR633G2790 Trochodendron aralioides HOM05D006442 ORTHO05D007980 4.5e-60 234.6 133 79.7
TWI09G1159 Tripterygium wilfordii HOM05D006442 ORTHO05D007980 7.7e-60 233.8 130 81.5
Sabra16G0134100 Salix brachista HOM05D006442 ORTHO05D007980 1.0e-59 233.4 133 81.2
Atru.chr11.2670 Acer truncatum HOM05D006442 ORTHO05D007980 1.7e-59 232.6 130 80.0
PGR042G3140 Punica granatum HOM05D006442 ORTHO05D007980 2.9e-59 231.9 133 77.4
Medtr3g027090 Medicago truncatula HOM05D006442 ORTHO05D007980 3.8e-59 231.5 133 78.9
VMungo1080G0430 Vigna mungo HOM05D006442 ORTHO05D007980 5.0e-59 231.1 129 79.1
CAN.G1110.8 Capsicum annuum HOM05D006442 ORTHO05D007980 6.5e-59 230.7 133 77.4
Nn7g36056 Nelumbo nucifera HOM05D006442 ORTHO05D007980 6.5e-59 230.7 133 78.9
Peaxi162Scf00045g00327 Petunia axillaris HOM05D006442 ORTHO05D007980 6.5e-59 230.7 133 75.9
Solyc10g037980.2 Solanum lycopersicum HOM05D006442 ORTHO05D007980 6.5e-59 230.7 129 80.6
PGSC0003DMG400026375 Solanum tuberosum HOM05D006442 ORTHO05D007980 1.1e-58 229.9 129 79.1
Migut.N01489 Erythranthe guttata HOM05D006442 ORTHO05D007980 3.2e-58 228.4 133 77.4
Phvul.005G037200 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 4.2e-58 228.0 133 77.4
QL04p004786 Quercus lobata HOM05D006442 ORTHO05D007980 4.2e-58 228.0 175 64.6
Gohir.D09G099100 Gossypium hirsutum HOM05D006442 ORTHO05D007980 5.5e-58 227.6 135 77.0
Gorai.006G116100 Gossypium raimondii HOM05D006442 ORTHO05D007980 5.5e-58 227.6 135 77.0
Sopen10g011600 Solanum pennellii HOM05D006442 ORTHO05D007980 7.2e-58 227.3 129 79.8
Gohir.A09G099700 Gossypium hirsutum HOM05D006442 ORTHO05D007980 1.6e-57 226.1 135 75.6
Aqoxy1G00188 Aquilegia oxysepala HOM05D006442 ORTHO05D007980 3.6e-57 224.9 133 77.4
Lalb_Chr25g0283271 Lupinus albus HOM05D006442 ORTHO05D007980 3.6e-57 224.9 133 75.9
Sed0019847 Sechium edule HOM05D006442 ORTHO05D007980 3.6e-57 224.9 134 76.1
Sc14g0005190 Simmondsia chinensis HOM05D006442 ORTHO05D007980 3.6e-57 224.9 130 76.9
Psat5g207000 Pisum sativum HOM05D006442 ORTHO05D007980 7.9e-57 223.8 133 76.7
DCAR_006304 Daucus carota HOM05D006442 ORTHO05D007980 1.0e-56 223.4 130 79.2
HanXRQChr01g0018511 Helianthus annuus HOM05D006442 ORTHO05D007980 1.4e-56 223.0 133 78.2
Nitab4.5_0002012g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 1.4e-56 223.0 133 75.9
SalBow5G2051 Salvia bowleyana HOM05D006442 ORTHO05D007980 2.3e-56 222.2 130 76.9
Phvul.005G038700 Phaseolus vulgaris HOM05D006442 ORTHO05D007980 3.9e-56 221.5 129 77.5
SGA_v2.0_scaffold4G02243 Striga asiatica HOM05D006442 ORTHO05D007980 5.1e-56 221.1 133 75.2
Thecc.01G414800 Theobroma cacao HOM05D006442 ORTHO05D007980 6.7e-56 220.7 132 79.5
ECA248G1263 Erigeron canadensis HOM05D006442 ORTHO05D007980 1.1e-55 219.9 133 75.2
CANSAT01G1452 Cannabis sativa HOM05D006442 ORTHO05D007980 2.0e-55 219.2 133 76.7
Nn2g15582 Nelumbo nucifera HOM05D006442 ORTHO05D007980 3.3e-55 218.4 127 76.4
COL.COLO4_23906 Corchorus olitorius HOM05D006442 ORTHO05D007980 4.3e-55 218.0 137 75.2
Ah.16g101020 Amaranthus hybridus HOM05D006442 ORTHO05D007980 9.7e-55 216.9 130 75.4
SGA_v2.0_scaffold10G05439 Striga asiatica HOM05D006442 ORTHO05D007980 2.2e-54 215.7 130 73.1
AUR62009476 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.1e-53 213.4 129 74.4
CAN.G1076.12 Capsicum annuum HOM05D006442 ORTHO05D007980 1.8e-53 212.6 133 73.7
AUR62023154 Chenopodium quinoa HOM05D006442 ORTHO05D007980 3.1e-53 211.8 129 73.6
CDE07G0477 Ceratophyllum demersum HOM05D006442 ORTHO05D007980 2.6e-52 208.8 130 70.0
EL10Ac2g04436 Beta vulgaris HOM05D006442 ORTHO05D007980 1.7e-51 206.1 130 71.5
THA.LOC104823024 Tarenaya hassleriana HOM05D006442 ORTHO05D007980 4.2e-50 201.4 130 70.0
unitig_22.g5766 Utricularia gibba HOM05D006442 ORTHO05D007980 2.7e-49 198.7 131 67.9
Atru.chr11.2672 Acer truncatum HOM05D006442 ORTHO05D007980 7.9e-49 197.2 110 81.8
PSO339G0425 Papaver somniferum HOM05D006442 ORTHO05D007980 3.0e-48 195.3 130 67.7
AL8G18110 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 6.7e-48 194.1 131 67.9
PSO384G2221 Papaver somniferum HOM05D006442 ORTHO05D007980 8.8e-48 193.7 130 67.7
BcaC06g31744 Brassica carinata HOM05D006442 ORTHO05D007980 4.4e-47 191.4 131 67.2
Ca_27853_v3 Cicer arietinum L. HOM05D006442 ORTHO05D007980 9.7e-47 190.3 227 46.3
AUR62023155 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.3e-46 189.9 129 65.9
AUR62009477 Chenopodium quinoa HOM05D006442 ORTHO05D007980 1.7e-46 189.5 129 65.1
AT5G42850 Arabidopsis thaliana HOM05D006442 ORTHO05D007980 2.2e-46 189.1 131 65.6
Thhalv10003289m.g Eutrema salsugineum HOM05D006442 ORTHO05D007980 4.8e-46 188.0 131 66.4
BcaC02g10802 Brassica carinata HOM05D006442 ORTHO05D007980 1.8e-45 186.0 131 64.9
C04p24990 Brassica napus HOM05D006442 ORTHO05D007980 1.8e-45 186.0 131 64.9
BolC4t23999H Brassica oleracea HOM05D006442 ORTHO05D007980 1.8e-45 186.0 131 64.9
A06p48230 Brassica napus HOM05D006442 ORTHO05D007980 2.4e-45 185.7 131 64.1
BraA06t27691Z Brassica rapa HOM05D006442 ORTHO05D007980 2.4e-45 185.7 131 64.1
Carub.0008s0607 Capsella rubella HOM05D006442 ORTHO05D007980 1.2e-44 183.3 131 63.4
Glyma.08G152300 Glycine max HOM05D006442 ORTHO05D007980 1.2e-44 183.3 133 65.4
Sp2g07550 Schrenkiella parvula HOM05D006442 ORTHO05D007980 1.2e-44 183.3 126 65.9
CARHR181310 Cardamine hirsuta HOM05D006442 ORTHO05D007980 2.0e-44 182.6 131 64.9
vmacro13638 Vaccinium macrocarpon HOM05D006442 ORTHO05D007980 1.4e-42 176.4 156 57.7
ATR0605G011 Amborella trichopoda HOM05D006442 ORTHO05D007980 7.2e-42 174.1 129 58.9
Aa31LG8G5740 Aethionema arabicum HOM05D000097 ORTHO05D000041 3.6e-41 171.8 132 59.1
SEGI_10267 Sequoiadendron giganteum HOM05D006442 ORTHO05D007980 8.0e-41 170.6 129 56.6
HPP92_018950 Vanilla planifolia HOM05D006442 ORTHO05D007980 1.8e-40 169.5 131 63.4
Zm00001eb381670 Zea mays HOM05D006442 ORTHO05D007980 1.1e-37 160.2 133 59.4
MBI01_g15755_MAGBIO Magnolia biondii HOM05D006442 ORTHO05D007980 4.1e-37 158.3 85 83.5
CsaV3_3G032370 Cucumis sativus L. HOM05D006442 ORTHO05D007980 5.3e-37 157.9 85 83.5
AagrBONN_evm.TU.Sc2ySwM_117.1593 Anthoceros agrestis HOM05D006442 ORTHO05D007980 2.0e-36 156.0 129 57.4
Os06g0320000 Oryza sativa ssp. japonica HOM05D006442 ORTHO05D007980 2.0e-36 156.0 135 54.8
Mapoly0028s0130 Marchantia polymorpha HOM05D006442 ORTHO05D007980 1.0e-35 153.7 130 53.8
SMO244G0064 Selaginella moellendorffii HOM05D006442 ORTHO05D007980 1.2e-33 146.7 129 52.7
CAN.G37.7 Capsicum annuum HOM05D006442 ORTHO05D007980 5.2e-32 141.4 102 59.8
Nitab4.5_0004606g0020 Nicotiana tabacum HOM05D006442 ORTHO05D007980 8.8e-32 140.6 83 75.9
Pp3c1_3150 Physcomitrium patens HOM05D006442 ORTHO05D007980 1.2e-31 140.2 129 51.2
ClCG10G012580 Citrullus lanatus HOM05D002156 ORTHO05D002328 4.5e-28 128.3 76 75.0
MD02G1317000 Malus domestica HOM05D006442 ORTHO05D007980 1.5e-26 123.2 67 80.6
CBR_g40140 Chara braunii HOM05D006442 ORTHO05D007980 8.0e-25 117.5 106 55.7
MD01G1062200 Malus domestica HOM05D006442 ORTHO05D007980 7.5e-23 110.9 72 75.0
Aa31LG8G5750 Aethionema arabicum HOM05D006442 ORTHO05D007980 4.8e-22 108.2 124 45.2
CAN.G290.22 Capsicum annuum HOM05D006442 ORTHO05D007980 4.7e-17 91.7 55 65.5
CsaV3_3G032380 Cucumis sativus L. HOM05D002156 ORTHO05D002328 1.8e-13 79.7 48 72.9
MELO3C023952.2 Cucumis melo HOM05D002156 ORTHO05D002328 3.2e-13 79.0 48 72.9
AL8G12830 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 7.8e-12 74.3 54 59.3
Cre07.g315100 Chlamydomonas reinhardtii HOM05D006442 ORTHO05D007980 8.6e-11 70.9 115 36.5
MD00G1052400 Malus domestica HOM05D006442 ORTHO05D007980 1.6e-09 66.6 43 67.4
AL5G40550 Arabidopsis lyrata HOM05D006442 ORTHO05D007980 4.7e-09 65.1 48 58.3


User provided reference genes

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