Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 0.0e+00 1324.7 717 100.0
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 0.0e+00 1094.3 717 82.8
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 0.0e+00 1082.4 747 80.6
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 2.0e-308 1062.0 717 81.0
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 5.2e-288 994.2 698 78.2
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 4.3e-282 974.5 806 70.3
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 1.2e-281 973.0 723 73.2
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 6.8e-280 967.2 725 73.7
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 7.5e-279 963.8 728 74.5
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 9.9e-279 963.4 721 73.8
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 1.0e-275 953.4 726 73.3
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 1.3e-275 953.0 723 74.3
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 8.6e-275 950.3 725 72.3
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.2e-273 946.4 727 73.6
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 9.9e-271 936.8 745 71.9
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 3.8e-270 934.9 723 73.4
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 5.4e-269 931.0 719 73.6
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 4.6e-268 927.9 808 65.8
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 1.8e-264 916.0 723 71.2
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 4.0e-264 914.8 729 70.9
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 2.2e-262 909.1 695 71.2
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 3.8e-262 908.3 732 69.4
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 1.9e-261 906.0 726 70.4
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 5.4e-261 904.4 725 70.1
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 1.3e-259 899.8 725 70.2
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 3.3e-258 895.2 729 68.9
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 3.3e-258 895.2 726 69.7
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 4.3e-258 894.8 727 69.7
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 1.3e-257 893.3 719 68.8
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 1.6e-257 892.9 727 69.5
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 4.8e-257 891.3 727 70.8
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 1.8e-256 889.4 726 69.6
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 3.1e-256 888.6 691 70.3
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 4.0e-256 888.3 726 69.4
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 9.0e-256 887.1 718 69.4
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 1.2e-255 886.7 672 73.4
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 2.0e-255 885.9 718 68.7
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 7.6e-255 884.0 728 69.0
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 3.2e-253 878.6 733 67.8
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 4.2e-253 878.2 728 68.4
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 2.3e-251 872.5 724 68.2
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 1.5e-250 869.8 704 69.2
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 2.5e-250 869.0 721 68.2
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 7.4e-250 867.5 722 67.0
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 1.6e-249 866.3 720 68.6
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 4.0e-248 861.7 722 66.5
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 2.0e-247 859.4 728 67.7
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.7e-246 856.3 728 67.9
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 3.2e-245 852.0 727 66.0
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 7.9e-244 847.4 717 67.8
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 1.0e-243 847.0 723 64.5
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 1.0e-243 847.0 717 66.4
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 1.0e-243 847.0 722 66.5
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 1.3e-243 846.7 719 66.3
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 5.1e-243 844.7 711 67.2
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 1.1e-242 843.6 720 64.7
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 5.6e-242 841.3 719 65.1
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 9.6e-242 840.5 723 66.7
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 1.3e-241 840.1 723 64.0
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 6.2e-241 837.8 717 68.6
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 9.0e-240 833.9 738 63.8
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 5.8e-239 831.2 723 66.0
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 1.1e-237 827.0 688 67.9
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 1.9e-237 826.2 725 62.9
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 3.2e-237 825.5 726 65.0
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 4.2e-237 825.1 690 68.1
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 1.2e-236 823.5 721 64.4
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 2.7e-236 822.4 725 63.0
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 8.2e-233 810.8 724 62.4
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 9.0e-232 807.4 721 63.4
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.3e-230 803.5 798 61.4
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 9.4e-229 797.3 689 67.6
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 7.9e-228 794.3 719 62.2
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 3.7e-225 785.4 721 62.0
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 3.7e-225 785.4 721 62.0
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 4.8e-225 785.0 721 64.8
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.4e-224 782.7 726 64.9
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.3e-222 776.9 725 63.6
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 3.6e-220 768.8 741 61.0
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 2.6e-218 762.7 717 60.4
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 1.8e-216 756.5 720 61.4
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 7.7e-215 751.1 695 63.2
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.7e-214 750.0 656 66.5
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 2.6e-210 736.1 673 62.1
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 3.5e-207 725.7 721 59.5
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 3.5e-199 699.1 674 61.0
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 1.3e-198 697.2 774 55.2
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 1.5e-189 667.2 725 55.0
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 4.4e-178 629.0 731 52.7
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 1.7e-174 617.1 593 62.4
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 1.8e-171 607.1 720 51.8
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 4.7e-164 582.4 577 58.8
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.2e-151 541.2 547 59.8
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 6.9e-147 525.4 423 72.8
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 1.4e-144 517.7 363 77.1
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 1.9e-141 507.3 577 55.3
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 1.3e-140 504.6 359 75.2
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 3.2e-136 490.0 424 67.2
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 3.3e-133 479.9 299 82.9
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 9.3e-120 435.3 372 68.5
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 5.9e-114 416.0 271 80.4
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 2.3e-94 350.9 695 36.7
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.6e-87 328.2 346 57.5
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 1.6e-87 328.2 502 48.8
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 1.0e-86 325.5 632 40.0
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 9.1e-83 312.4 272 65.8
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 1.6e-82 311.6 669 35.9
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 1.6e-82 311.6 445 47.9
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 2.2e-81 307.8 683 32.2
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 2.9e-81 307.4 371 52.6
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 3.6e-71 273.9 708 31.6
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 1.0e-70 272.3 725 31.0
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 6.2e-39 166.8 136 67.6
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 3.5e-26 124.4 99 71.7
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 3.5e-26 124.4 84 70.2
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 9.6e-24 116.3 156 47.4
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.2e-23 113.6 110 56.4
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 8.1e-23 113.2 510 24.1
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 2.6e-21 108.2 94 62.8
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 2.4e-19 101.7 171 44.4
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 7.1e-19 100.1 105 57.1
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 1.6e-18 99.0 95 54.7
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.6e-18 97.4 167 39.5
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 8.7e-17 93.2 154 38.3
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 9.6e-16 89.7 208 33.7
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.1e-14 86.3 54 85.2
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 6.9e-14 83.6 118 40.7
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 9.0e-14 83.2 70 62.9
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 4.2e-11 74.3 56 67.9
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 5.5e-11 73.9 97 46.4
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 2.5e-08 65.1 41 68.3
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 2.1e-07 62.0 41 78.0


User provided reference genes

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