Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016458 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 7.8e-97 357.1 174 100.0
CSS0024781 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 4.7e-33 145.2 103 68.0
CSS0012554 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 6.8e-32 141.4 158 49.4
CSS0043342 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 4.5e-28 128.6 180 41.7
CSS0018658 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 8.6e-27 124.4 149 45.6
CSS0029903 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 6.1e-25 118.2 137 47.4
CSS0025679 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 4.4e-23 112.1 133 44.4
CSS0042344 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.1e-21 107.5 98 53.1
CSS0020104 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 5.4e-21 105.1 174 41.4
CSS0017101 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 1.0e-19 100.9 117 47.9
Actinidia07483 Actinidia chinensis HOM05D011882 ORTHO05D011057 5.0e-19 98.6 104 50.0
CSS0023562 Camellia sinensis var. sinensis HOM05D000557 ORTHO05D011057 3.3e-18 95.9 148 36.5
CSS0000959 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.8e-17 92.8 91 48.4
CSS0047350 Camellia sinensis var. sinensis HOM05D011882 ORTHO05D011057 2.0e-15 86.7 68 52.9
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 1.7e-14 83.6 161 34.2
vmacro11531 Vaccinium macrocarpon HOM05D010265 ORTHO05D009356 2.2e-14 83.2 179 33.0
Actinidia24024 Actinidia chinensis HOM05D023450 ORTHO05D023249 6.4e-14 81.6 96 42.7
CSS0047841 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 1.1e-13 80.9 123 35.8
vmacro05509 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 2.4e-13 79.7 164 32.9
CSS0020841 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 5.4e-13 78.6 127 40.2
CSS0001491 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 9.2e-13 77.8 136 36.0
CSS0010468 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D011057 9.2e-13 77.8 96 42.7
Rhsim09G0042800 Rhododendron simsii HOM05D017214 ORTHO05D018100 4.6e-12 75.5 89 39.3
Actinidia04023 Actinidia chinensis HOM05D012898 ORTHO05D011057 3.9e-11 72.4 149 34.2
vmacro12730 Vaccinium macrocarpon HOM05D002015 ORTHO05D011057 8.6e-11 71.2 88 34.1
vmacro16299 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 2.5e-10 69.7 157 32.5
Actinidia23250 Actinidia chinensis HOM05D012898 ORTHO05D009356 4.3e-10 68.9 152 29.6
Actinidia12169 Actinidia chinensis HOM05D012898 ORTHO05D009356 7.3e-10 68.2 152 28.3
Gohir.A04G039650 Gossypium hirsutum HOM05D011882 ORTHO05D015081 1.6e-09 67.0 86 44.2
Rhsim02G0045800 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.1e-09 66.6 97 33.0
Rhsim03G0015400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.1e-09 66.6 97 30.9
Ah.07g198450 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.8e-09 66.2 92 40.2
Rhsim13G0125400 Rhododendron simsii HOM05D008219 ORTHO05D009356 2.8e-09 66.2 78 35.9
RhsimUnG0101100 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.2e-09 65.1 78 35.9
Rhsim05G0075400 Rhododendron simsii HOM05D008219 ORTHO05D009356 1.1e-08 64.3 78 35.9
Sc14g0003540 Simmondsia chinensis HOM05D009209 ORTHO05D011057 1.4e-08 63.9 111 29.7
Gohir.A10G205900 Gossypium hirsutum HOM05D000003 ORTHO05D000006 3.1e-08 62.8 97 40.2
vmacro09750 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 3.1e-08 62.8 140 30.7
vmacro22723 Vaccinium macrocarpon HOM05D005228 ORTHO05D006208 3.1e-08 62.8 140 30.7
COL.COLO4_32924 Corchorus olitorius HOM05D011882 ORTHO05D015081 4.0e-08 62.4 83 39.8
Rhsim02G0133000 Rhododendron simsii HOM05D008219 ORTHO05D009356 6.8e-08 61.6 70 38.6
Sc13g0007280 Simmondsia chinensis HOM05D009209 ORTHO05D011057 6.8e-08 61.6 92 34.8
Ah.08g221330 Amaranthus hybridus HOM05D008762 ORTHO05D011252 8.9e-08 61.2 149 28.2
vmacro12740 Vaccinium macrocarpon HOM05D000625 ORTHO05D000467 8.9e-08 61.2 157 29.3
vmacro21928 Vaccinium macrocarpon HOM05D000086 ORTHO05D000431 1.2e-07 60.8 80 38.8
Lj5g0015440 Lotus japonicus HOM05D008220 ORTHO05D010358 2.0e-07 60.1 95 31.6
Ah.01g013230 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.4e-07 58.9 99 38.4
Ah.02g118210 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.4e-07 58.9 150 33.3
Ah.08g219500 Amaranthus hybridus HOM05D008762 ORTHO05D011252 4.4e-07 58.9 119 27.7
Lj4g0019865 Lotus japonicus HOM05D019244 ORTHO05D036501 5.8e-07 58.5 78 37.2
LjContig00357g0008125 Lotus japonicus HOM05D008220 ORTHO05D010358 5.8e-07 58.5 171 26.3
Psat5g175040 Pisum sativum HOM05D007807 ORTHO05D001516 7.5e-07 58.2 117 32.5
Duzib170G0053 Durio zibethinus HOM05D037386 ORTHO05D035091 1.3e-06 57.4 99 31.3
Psat5g029760 Pisum sativum HOM05D007807 ORTHO05D001516 1.3e-06 57.4 154 27.3
Sc23g0004170 Simmondsia chinensis HOM05D006933 ORTHO05D009629 1.7e-06 57.0 151 24.5
Ah.03g145270 Amaranthus hybridus HOM05D008762 ORTHO05D011252 2.2e-06 56.6 119 30.3
CSS0010661 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.9e-06 56.2 84 39.3
CSS0011675 Camellia sinensis var. sinensis HOM05D012301 ORTHO05D013815 2.9e-06 56.2 166 28.9
Lj6g0007004 Lotus japonicus HOM05D019244 ORTHO05D010358 2.9e-06 56.2 78 38.5
Psat7g033120 Pisum sativum HOM05D007807 ORTHO05D001516 2.9e-06 56.2 117 31.6
CSS0021702 Camellia sinensis var. sinensis HOM05D012713 ORTHO05D011057 3.7e-06 55.8 125 32.0
CSS0044383 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000006 3.7e-06 55.8 84 38.1
Sc14g0002620 Simmondsia chinensis HOM05D009209 ORTHO05D011705 3.7e-06 55.8 81 35.8
EL10Ac2g04471 Beta vulgaris HOM05D008976 ORTHO05D011121 4.9e-06 55.5 100 28.0
DCAR_012787 Daucus carota HOM05D000428 ORTHO05D000582 4.9e-06 55.5 89 34.8
Lj5g0003699 Lotus japonicus HOM05D008220 ORTHO05D010358 4.9e-06 55.5 125 28.0
Rhsim12G0132400 Rhododendron simsii HOM05D011882 ORTHO05D011057 4.9e-06 55.5 103 34.0
Sc13g0005400 Simmondsia chinensis HOM05D006933 ORTHO05D009629 4.9e-06 55.5 76 35.5
Lj1g0017175 Lotus japonicus HOM05D002777 ORTHO05D001516 6.4e-06 55.1 116 31.9
Sc10g0004010 Simmondsia chinensis HOM05D031748 ORTHO05D011057 6.4e-06 55.1 69 40.6
Gohir.A06G194460 Gossypium hirsutum HOM05D000003 ORTHO05D015081 8.3e-06 54.7 70 44.3
Lsat_1_v5_gn_3_98460 Lactuca sativa HOM05D003915 ORTHO05D005386 8.3e-06 54.7 110 28.2
Sc24g0004230 Simmondsia chinensis HOM05D009348 ORTHO05D010856 8.3e-06 54.7 81 35.8
Sc26g0001380 Simmondsia chinensis HOM05D006933 ORTHO05D009629 8.3e-06 54.7 76 35.5


User provided reference genes

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