Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016412 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 7.8e-64 246.9 119 100.0
CSS0006642 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 2.2e-21 105.9 87 65.5
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 8.5e-10 67.4 34 88.2
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.4e-09 66.6 34 88.2
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 1.4e-09 66.6 34 85.3
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.9e-09 66.2 34 85.3
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 2.5e-09 65.9 34 85.3
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 2.5e-09 65.9 34 82.4
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 2.5e-09 65.9 34 82.4
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 2.5e-09 65.9 34 85.3
RcHm_v2.0_Chr2g0096141 Rosa chinensis HOM05D003653 ORTHO05D004249 2.5e-09 65.9 34 85.3
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 3.2e-09 65.5 34 85.3
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 4.2e-09 65.1 34 85.3
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 4.2e-09 65.1 34 82.4
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 4.2e-09 65.1 34 85.3
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 5.5e-09 64.7 34 79.4
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 5.5e-09 64.7 34 85.3
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 5.5e-09 64.7 34 85.3
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 5.5e-09 64.7 34 85.3
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 5.5e-09 64.7 34 85.3
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 5.5e-09 64.7 34 79.4
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 5.5e-09 64.7 34 85.3
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 7.2e-09 64.3 34 82.4
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 7.2e-09 64.3 34 82.4
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 7.2e-09 64.3 34 85.3
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 7.2e-09 64.3 34 85.3
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 9.4e-09 63.9 34 82.4
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 9.4e-09 63.9 34 82.4
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 9.4e-09 63.9 34 82.4
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 9.4e-09 63.9 34 85.3
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 82.4
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 82.4
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
Solyc07g017520.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 1.2e-08 63.5 34 79.4
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 1.6e-08 63.2 34 82.4
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 1.6e-08 63.2 34 79.4
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 1.6e-08 63.2 34 79.4
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 2.1e-08 62.8 34 79.4
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 2.1e-08 62.8 34 82.4
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 2.7e-08 62.4 34 82.4
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 2.7e-08 62.4 34 79.4
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 2.7e-08 62.4 34 79.4
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 2.7e-08 62.4 34 76.5
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 2.7e-08 62.4 34 79.4
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 2.7e-08 62.4 34 76.5
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 2.7e-08 62.4 34 76.5
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 3.6e-08 62.0 34 82.4
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 3.6e-08 62.0 34 79.4
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 3.6e-08 62.0 34 76.5
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 4.7e-08 61.6 34 76.5
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 4.7e-08 61.6 34 82.4
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 4.7e-08 61.6 34 76.5
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 6.1e-08 61.2 34 85.3
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 6.1e-08 61.2 34 79.4
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 7.9e-08 60.8 34 73.5
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 7.9e-08 60.8 34 73.5
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 7.9e-08 60.8 34 79.4
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 1.0e-07 60.5 34 76.5
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 1.4e-07 60.1 34 79.4
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.4e-07 60.1 34 79.4
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 2.3e-07 59.3 34 76.5
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 2.3e-07 59.3 34 73.5
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 3.0e-07 58.9 31 87.1
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 3.0e-07 58.9 34 70.6
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 3.0e-07 58.9 34 70.6
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 3.0e-07 58.9 34 70.6
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 3.0e-07 58.9 31 87.1
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 3.0e-07 58.9 34 70.6
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 3.0e-07 58.9 34 79.4
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 3.9e-07 58.5 34 70.6
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 3.9e-07 58.5 34 70.6
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 3.9e-07 58.5 34 70.6
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 3.9e-07 58.5 34 70.6
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 3.9e-07 58.5 34 70.6
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 3.9e-07 58.5 34 70.6
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 3.9e-07 58.5 34 76.5
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 5.1e-07 58.2 34 70.6
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 5.1e-07 58.2 34 73.5
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 5.1e-07 58.2 34 76.5
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 6.7e-07 57.8 31 83.9
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 6.7e-07 57.8 34 67.6
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 6.7e-07 57.8 31 83.9
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 8.8e-07 57.4 36 66.7
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 8.8e-07 57.4 34 73.5
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 1.1e-06 57.0 34 76.5
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 1.1e-06 57.0 34 76.5
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 1.1e-06 57.0 34 76.5
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.1e-06 57.0 31 77.4
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 1.5e-06 56.6 34 67.6
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 1.5e-06 56.6 34 67.6
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 9.7e-06 53.9 34 61.8


User provided reference genes

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