Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016400 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 1.3e-51 206.1 103 100.0
CSS0000263 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 1.9e-50 202.2 103 98.1
CSS0005982 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 1.9e-50 202.2 103 98.1
CSS0003955 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 1.6e-49 199.1 103 96.1
CSS0034235 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D022125 2.8e-49 198.4 103 97.1
CSS0030375 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 4.3e-34 147.9 114 71.9
Glyma.20G190000 Glycine max HOM05D000207 ORTHO05D004473 9.5e-34 146.7 114 68.4
Aa31LG11G5380 Aethionema arabicum HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 69.3
Aa31LG3G3390 Aethionema arabicum HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 69.3
AL3G21960 Arabidopsis lyrata HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 69.3
AT5G04510 Arabidopsis thaliana HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 69.3
Thhalv10020612m.g Eutrema salsugineum HOM05D000207 ORTHO05D004473 1.2e-33 146.4 114 69.3
CARHR085060 Cardamine hirsuta HOM05D000207 ORTHO05D004473 1.6e-33 146.0 114 69.3
FAN06G1510 Fragaria x ananassa HOM05D000055 ORTHO05D004473 1.6e-33 146.0 115 69.6
Lalb_Chr06g0170081 Lupinus albus HOM05D000207 ORTHO05D004473 1.6e-33 146.0 114 69.3
Atru.chr12.932 Acer truncatum HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
AT3G10540 Arabidopsis thaliana HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 2.1e-33 145.6 114 69.3
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 2.1e-33 145.6 114 69.3
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 2.1e-33 145.6 114 69.3
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 2.1e-33 145.6 114 69.3
BraA01t04243Z Brassica rapa HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
BraA05t22653Z Brassica rapa HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
Duzib114G0299 Durio zibethinus HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
Duzib128G1411 Durio zibethinus HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
FvH4_7g18280 Fragaria vesca HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
FAN06G3011 Fragaria x ananassa HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
Lj5g0004677 Lotus japonicus HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 67.5
Phvul.007G144600 Phaseolus vulgaris HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 67.5
RcHm_v2.0_Chr1g0361861 Rosa chinensis HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
Sabra10G0180600 Salix brachista HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 71.1
Sp3g08820 Schrenkiella parvula HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
TWI38G1628 Tripterygium wilfordii HOM05D000207 ORTHO05D004473 2.1e-33 145.6 114 69.3
BcaB04g21234 Brassica carinata HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 68.4
Cfa011202 Carpinus fangiana HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
Glyma.10G200600 Glycine max HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 67.5
Gohir.A01G129100 Gossypium hirsutum HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
Gohir.D01G118700 Gossypium hirsutum HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 69.3
Medtr1g090917 Medicago truncatula HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 67.5
Psat6g174800 Pisum sativum HOM05D000207 ORTHO05D004473 2.8e-33 145.2 114 67.5
Carub.0003s0978 Capsella rubella HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Carub.0006s0345 Capsella rubella HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
CAN.G135.49 Capsicum annuum HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
CARHR208760 Cardamine hirsuta HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Ca_10467_v3 Cicer arietinum L. HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 67.5
Thhalv10013385m.g Eutrema salsugineum HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Nitab4.5_0000593g0180 Nicotiana tabacum HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Peaxi162Scf00253g00141 Petunia axillaris HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Sp6g38240 Schrenkiella parvula HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Solyc11g007760.2 Solanum lycopersicum HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
Sopen11g003620 Solanum pennellii HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
THA.LOC104816450 Tarenaya hassleriana HOM05D000207 ORTHO05D004473 3.6e-33 144.8 114 68.4
BolC1t05385H Brassica oleracea HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 69.3
Oeu047513.2 Olea europaea HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 68.4
Potri.010G232800 Populus trichocarpa HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 70.2
Thecc.10G093700 Theobroma cacao HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 68.4
VMungo0720G2759 Vigna mungo HOM05D000207 ORTHO05D004473 4.7e-33 144.4 114 66.7
A10p31580 Brassica napus HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 67.5
C09p72250 Brassica napus HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 67.5
BolC9t59969H Brassica oleracea HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 67.5
BraA10t45204Z Brassica rapa HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 67.5
CSS0024824 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 68.4
CSS0035486 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 68.4
CAN.G316.5 Capsicum annuum HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 69.3
Cc02_g10410 Coffea canephora HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 68.4
QL04p040407 Quercus lobata HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 67.5
vmacro07211 Vaccinium macrocarpon HOM05D000207 ORTHO05D004473 6.2e-33 144.1 114 68.4
Ciclev10031678m.g Citrus clementina HOM05D000207 ORTHO05D004473 8.1e-33 143.7 114 68.4
Gorai.002G144800 Gossypium raimondii HOM05D000207 ORTHO05D004473 8.1e-33 143.7 114 68.4
Psat0s2832g0040 Pisum sativum HOM05D000207 ORTHO05D004473 8.1e-33 143.7 114 66.7
PGSC0003DMG402027355 Solanum tuberosum HOM05D000207 ORTHO05D004473 8.1e-33 143.7 114 68.4
TAR633G0321 Trochodendron aralioides HOM05D001933 ORTHO05D004473 8.1e-33 143.7 114 69.3
BcaC05g29451 Brassica carinata HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 68.4
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 1.1e-32 143.3 114 68.4
CANSAT56G2199 Cannabis sativa HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 69.3
Eucgr.J01029 Eucalyptus grandis HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 68.4
MD01G1098600 Malus domestica HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 68.4
Nitab4.5_0001016g0070 Nicotiana tabacum HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 66.7
Nitab4.5_0003408g0150 Nicotiana tabacum HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 67.5
Prupe.2G204000 Prunus persica HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 68.4
Sc20g0001400 Simmondsia chinensis HOM05D000207 ORTHO05D004473 1.1e-32 143.3 114 68.4
CiPaw.14G027400 Carya illinoinensis HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 68.4
FAN01G1531 Fragaria x ananassa HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 68.4
FAN01G2015 Fragaria x ananassa HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 68.4
FAN10G1984 Fragaria x ananassa HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 68.4
Lalb_Chr19g0129301 Lupinus albus HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 67.5
Manes.10G054000 Manihot esculenta HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 66.7
Nn2g13951 Nelumbo nucifera HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 68.4
Solyc03g071750.3 Solanum lycopersicum HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 68.4
Sopen03g020030 Solanum pennellii HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 68.4
PGSC0003DMG400016913 Solanum tuberosum HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 68.4
TPR.G21921 Trifolium pratense HOM05D000207 ORTHO05D004473 1.4e-32 142.9 114 65.8
AL6G14150 Arabidopsis lyrata HOM05D000207 ORTHO05D004473 1.8e-32 142.5 114 67.5
EL10As9g23947 Beta vulgaris HOM05D000207 ORTHO05D004473 1.8e-32 142.5 114 67.5
AUR62043367 Chenopodium quinoa HOM05D000207 ORTHO05D004473 1.8e-32 142.5 114 67.5
Hma1.2p1_0361F.1_g135950 Hydrangea macrophylla HOM05D000207 ORTHO05D004473 1.8e-32 142.5 114 67.5
Potri.008G028800 Populus trichocarpa HOM05D000207 ORTHO05D004473 1.8e-32 142.5 114 67.5
Rhsim03G0110400 Rhododendron simsii HOM05D000207 ORTHO05D004473 1.8e-32 142.5 114 67.5
Sed0021073 Sechium edule HOM05D000207 ORTHO05D004473 1.8e-32 142.5 114 67.5
SGA_v2.0_scaffold13G06467 Striga asiatica HOM05D000207 ORTHO05D004473 1.8e-32 142.5 114 67.5
Actinidia06711 Actinidia chinensis HOM05D000207 ORTHO05D004473 2.3e-32 142.1 114 67.5
Actinidia18562 Actinidia chinensis HOM05D000207 ORTHO05D004473 2.3e-32 142.1 114 67.5
ClCG05G021500 Citrullus lanatus HOM05D000207 ORTHO05D004473 2.3e-32 142.1 114 67.5
Haze_02644 Corylus avellana HOM05D000207 ORTHO05D004473 2.3e-32 142.1 124 64.5
Migut.F00925 Erythranthe guttata HOM05D000207 ORTHO05D004473 2.3e-32 142.1 114 67.5
MD07G1165300 Malus domestica HOM05D000207 ORTHO05D004473 2.3e-32 142.1 114 68.4
Peaxi162Scf00398g00725 Petunia axillaris HOM05D000207 ORTHO05D004473 2.3e-32 142.1 119 64.7
Psat0s1617g0040 Pisum sativum HOM05D000207 ORTHO05D004473 2.3e-32 142.1 114 65.8
GSVIVG01034673001 Vitis vinifera HOM05D000207 ORTHO05D004473 2.3e-32 142.1 114 67.5
MELO3C012376.2 Cucumis melo HOM05D000207 ORTHO05D004473 3.1e-32 141.7 114 67.5
CsaV3_5G035750 Cucumis sativus L. HOM05D000207 ORTHO05D004473 3.1e-32 141.7 114 67.5
ECA233G1732 Erigeron canadensis HOM05D000038 ORTHO05D004473 3.1e-32 141.7 114 66.7
Hma1.2p1_1625F.1_g294310 Hydrangea macrophylla HOM05D000207 ORTHO05D004473 3.1e-32 141.7 114 65.8
Lsat_1_v5_gn_8_22900 Lactuca sativa HOM05D000207 ORTHO05D004473 3.1e-32 141.7 114 66.7
Manes.07G093000 Manihot esculenta HOM05D000207 ORTHO05D004473 3.1e-32 141.7 114 66.7
Nitab4.5_0001313g0010 Nicotiana tabacum HOM05D000207 ORTHO05D004473 3.1e-32 141.7 114 65.8
Ah.04g163540 Amaranthus hybridus HOM05D000207 ORTHO05D004473 5.2e-32 141.0 114 66.7
arahy.Tifrunner.gnm1.ann1.I5SWNV Arachis hypogaea HOM05D000207 ORTHO05D004473 5.2e-32 141.0 114 66.7
arahy.Tifrunner.gnm1.ann1.MV6I8X Arachis hypogaea HOM05D000207 ORTHO05D004473 5.2e-32 141.0 114 66.7
Gohir.D05G291500 Gossypium hirsutum HOM05D000207 ORTHO05D004473 5.2e-32 141.0 114 65.8
Gorai.009G307200 Gossypium raimondii HOM05D000207 ORTHO05D004473 5.2e-32 141.0 114 65.8
PGR044G1457 Punica granatum HOM05D000207 ORTHO05D004473 5.2e-32 141.0 114 66.7
AUR62043740 Chenopodium quinoa HOM05D000207 ORTHO05D004473 6.8e-32 140.6 114 66.7
Migut.F01666 Erythranthe guttata HOM05D000207 ORTHO05D004473 6.8e-32 140.6 114 66.7
SalBow4G0022 Salvia bowleyana HOM05D000207 ORTHO05D004473 6.8e-32 140.6 114 66.7
Dinv31278 Davidia involucrata HOM05D001491 ORTHO05D004473 1.2e-31 139.8 115 68.7
CSS0035322 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 1.5e-31 139.4 115 68.7
CiPaw.13G034800 Carya illinoinensis HOM05D000207 ORTHO05D004473 1.5e-31 139.4 114 66.7
Gohir.A05G290300 Gossypium hirsutum HOM05D000207 ORTHO05D004473 2.0e-31 139.0 114 64.9
Gohir.A05G394300 Gossypium hirsutum HOM05D000207 ORTHO05D004473 2.6e-31 138.7 114 65.8
Sed0002916 Sechium edule HOM05D000207 ORTHO05D004473 2.6e-31 138.7 115 67.8
unitig_736.g22534 Utricularia gibba HOM05D000207 ORTHO05D004473 2.6e-31 138.7 114 65.8
HanXRQChr12g0368411 Helianthus annuus HOM05D000207 ORTHO05D004473 4.4e-31 137.9 114 64.9
Nn6g35103 Nelumbo nucifera HOM05D000207 ORTHO05D004473 4.4e-31 137.9 114 66.7
MSTRG.9118 Avicennia marina HOM05D000207 ORTHO05D004473 7.5e-31 137.1 114 64.0
DCAR_014270 Daucus carota HOM05D000207 ORTHO05D004473 7.5e-31 137.1 119 63.0
COL.COLO4_07609 Corchorus olitorius HOM05D001491 ORTHO05D004473 9.9e-31 136.7 130 59.2
MSTRG.27513 Avicennia marina HOM05D000207 ORTHO05D004473 1.7e-30 136.0 114 65.8
BcaC06g32162 Brassica carinata HOM05D000207 ORTHO05D004473 2.2e-30 135.6 138 56.5
TAR623G1710 Trochodendron aralioides HOM05D000207 ORTHO05D004473 2.2e-30 135.6 114 66.7
Aqoxy2G01506 Aquilegia oxysepala HOM05D000207 ORTHO05D004473 4.9e-30 134.4 114 64.0
FAN10G1843 Fragaria x ananassa HOM05D000207 ORTHO05D004473 4.9e-30 134.4 136 57.4
Cpa.g.sc128.64 Carica papaya HOM05D000207 ORTHO05D004473 6.4e-30 134.0 114 65.8
PSO063G1339 Papaver somniferum HOM05D000207 ORTHO05D004473 1.9e-29 132.5 114 61.4
PSO339G3642 Papaver somniferum HOM05D000207 ORTHO05D004473 5.4e-29 131.0 114 60.5
HanXRQChr08g0218051 Helianthus annuus HOM05D000207 ORTHO05D004473 9.2e-29 130.2 115 63.5
PSO339G2723 Papaver somniferum HOM05D000207 ORTHO05D004473 1.2e-28 129.8 114 60.5
PSO384G5087 Papaver somniferum HOM05D000207 ORTHO05D004473 1.2e-28 129.8 114 60.5
CDE08G1512 Ceratophyllum demersum HOM05D000207 ORTHO05D004473 4.6e-28 127.9 114 63.2
FAN03G1778 Fragaria x ananassa HOM05D000207 ORTHO05D004473 4.6e-28 127.9 136 55.9
Lj3A934G30 Lonicera japonica HOM05D000207 ORTHO05D004473 6.0e-28 127.5 148 51.4
Lalb_Chr02g0151221 Lupinus albus HOM05D000207 ORTHO05D004473 2.3e-27 125.6 105 64.8
ATR0661G301 Amborella trichopoda HOM05D000207 ORTHO05D004473 3.0e-27 125.2 114 60.5
HPP92_025159 Vanilla planifolia HOM05D000207 ORTHO05D004473 3.0e-27 125.2 114 61.4
Zm00001eb146330 Zea mays HOM05D000207 ORTHO05D004473 2.1e-25 119.0 114 57.9
Hund06744 Selenicereus undatus HOM05D000207 ORTHO05D004473 3.6e-25 118.2 169 44.4
Os01g0872800 Oryza sativa ssp. japonica HOM05D000207 ORTHO05D004473 4.7e-25 117.9 114 57.0
unitig_899.g14484 Utricularia gibba HOM05D000207 ORTHO05D004473 6.2e-25 117.5 80 73.8
CSS0023838 Camellia sinensis var. sinensis HOM05D000207 ORTHO05D004473 1.4e-24 116.3 114 62.3
MBI17_g17191_MAGBIO Magnolia biondii HOM05D000207 ORTHO05D004473 4.0e-24 114.8 109 60.6
Gohir.A05G394175 Gossypium hirsutum HOM05D000207 ORTHO05D004473 8.9e-24 113.6 70 77.1
THA.LOC104816510 Tarenaya hassleriana HOM05D000207 ORTHO05D022125 2.4e-21 105.5 102 55.9
SEGI_25768 Sequoiadendron giganteum HOM05D000207 ORTHO05D004473 2.7e-20 102.1 114 48.2
Lj2C25T7 Lonicera japonica HOM05D000207 ORTHO05D004473 1.1e-18 96.7 114 52.6
DCAR_006380 Daucus carota HOM05D000207 ORTHO05D004473 4.3e-18 94.7 114 50.9
SMO367G0096 Selaginella moellendorffii HOM05D000207 ORTHO05D004473 7.3e-18 94.0 117 47.0
HPP92_009267 Vanilla planifolia HOM05D000207 ORTHO05D004473 8.1e-17 90.5 112 48.2
SGA_v2.0_scaffold13G06504 Striga asiatica HOM05D000207 ORTHO05D004473 4.0e-16 88.2 87 58.6
Mapoly0015s0182 Marchantia polymorpha HOM05D000207 ORTHO05D004473 1.7e-14 82.8 113 45.1
AagrBONN_evm.TU.Sc2ySwM_368.3398 Anthoceros agrestis HOM05D000207 ORTHO05D004473 2.3e-11 72.4 114 39.5
Pp3c26_8560 Physcomitrium patens HOM05D000207 ORTHO05D004473 9.6e-10 67.0 115 39.1
SHI21308 Sapria himalayana HOM05D000207 ORTHO05D004473 6.2e-09 64.3 45 66.7
CDE02G2680 Ceratophyllum demersum HOM05D000146 ORTHO05D004473 1.1e-08 63.5 41 73.2
Cre11.g467568 Chlamydomonas reinhardtii HOM05D000207 ORTHO05D004473 7.6e-07 57.4 116 32.8
BcaNung05806 Brassica carinata HOM05D000146 ORTHO05D004473 9.9e-07 57.0 27 92.6


User provided reference genes

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