Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016394 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 9.2e-312 1073.2 676 100.0
CSS0048598 Camellia sinensis var. sinensis HOM05D006822 ORTHO05D008884 1.4e-234 816.6 574 93.6
Rhsim07G0025500 Rhododendron simsii HOM05D006822 ORTHO05D008884 2.9e-232 808.9 660 70.6
vmacro13383 Vaccinium macrocarpon HOM05D006822 ORTHO05D008884 2.1e-230 802.7 687 67.2
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.4e-210 736.9 655 67.0
Hma1.2p1_0053F.1_g030830 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 2.3e-205 719.5 664 62.7
Manes.01G264800 Manihot esculenta HOM05D006822 ORTHO05D008884 1.9e-199 699.9 661 62.2
QL08p051944 Quercus lobata HOM05D006822 ORTHO05D008884 1.8e-197 693.3 669 71.0
GSVIVG01027532001 Vitis vinifera HOM05D006822 ORTHO05D008884 2.3e-197 693.0 667 63.7
Lj7A526T89 Lonicera japonica HOM05D006822 ORTHO05D008884 5.4e-194 681.8 662 64.8
Potri.002G149800 Populus trichocarpa HOM05D006822 ORTHO05D008884 1.2e-193 680.6 667 61.2
Cfa001701 Carpinus fangiana HOM05D006822 ORTHO05D008884 8.6e-192 674.5 668 62.4
CiPaw.01G260400 Carya illinoinensis HOM05D006822 ORTHO05D008884 8.6e-192 674.5 667 59.1
Gorai.004G041400 Gossypium raimondii HOM05D006822 ORTHO05D008884 1.9e-191 673.3 669 69.5
Haze_16833 Corylus avellana HOM05D006822 ORTHO05D008884 2.5e-191 672.9 667 62.5
Gohir.A08G031700 Gossypium hirsutum HOM05D006822 ORTHO05D008884 4.3e-191 672.2 671 70.2
Gohir.D08G042800 Gossypium hirsutum HOM05D006822 ORTHO05D008884 6.2e-190 668.3 669 68.9
PGSC0003DMG401012750 Solanum tuberosum HOM05D006822 ORTHO05D008884 6.2e-190 668.3 674 61.9
Solyc01g091510.4 Solanum lycopersicum HOM05D006822 ORTHO05D008884 4.4e-188 662.1 676 61.5
Thecc.01G374100 Theobroma cacao HOM05D006822 ORTHO05D008884 1.7e-187 660.2 669 60.8
Cc02_g36520 Coffea canephora HOM05D006822 ORTHO05D008884 9.2e-186 654.4 677 67.4
Sopen01g037280 Solanum pennellii HOM05D006822 ORTHO05D008884 9.2e-186 654.4 696 59.6
Ciclev10019178m.g Citrus clementina HOM05D006822 ORTHO05D008884 3.5e-185 652.5 662 60.9
CAN.G170.5 Capsicum annuum HOM05D006822 ORTHO05D008884 4.6e-185 652.1 674 60.7
Duzib133G0703 Durio zibethinus HOM05D006822 ORTHO05D008884 7.3e-183 644.8 662 64.4
TAR375G1023 Trochodendron aralioides HOM05D006822 ORTHO05D008884 1.6e-182 643.7 675 58.8
Hma1.2p1_0053F.1_g030820 Hydrangea macrophylla HOM05D006822 ORTHO05D008884 1.1e-181 641.0 521 65.1
Atru.chr5.328 Acer truncatum HOM05D006822 ORTHO05D008884 1.4e-181 640.6 666 58.9
TWI14G1233 Tripterygium wilfordii HOM05D006822 ORTHO05D008884 2.4e-181 639.8 666 68.3
CsaV3_3G009540 Cucumis sativus L. HOM05D006822 ORTHO05D008884 3.1e-181 639.4 666 60.5
MELO3C006175.2 Cucumis melo HOM05D006822 ORTHO05D008884 6.8e-181 638.3 666 60.8
ClCG05G002100 Citrullus lanatus HOM05D006822 ORTHO05D008884 8.9e-181 637.9 667 58.6
Sabra02G0118500 Salix brachista HOM05D006822 ORTHO05D008884 2.0e-180 636.7 656 59.0
Actinidia31423 Actinidia chinensis HOM05D006822 ORTHO05D008884 2.6e-180 636.3 662 58.6
Cpa.g.sc18.138 Carica papaya HOM05D006822 ORTHO05D008884 4.4e-180 635.6 663 58.1
Nitab4.5_0004320g0040 Nicotiana tabacum HOM05D006822 ORTHO05D008884 4.4e-180 635.6 668 56.3
CANSAT56G1004 Cannabis sativa HOM05D006822 ORTHO05D008884 1.7e-179 633.6 669 67.1
Oeu003493.1 Olea europaea HOM05D006822 ORTHO05D008884 6.4e-179 631.7 684 61.5
Peaxi162Scf00021g01312 Petunia axillaris HOM05D006822 ORTHO05D008884 1.6e-177 627.1 704 53.0
Aqoxy7G00564 Aquilegia oxysepala HOM05D006822 ORTHO05D008884 4.6e-177 625.5 659 58.6
Ah.05g175170 Amaranthus hybridus HOM05D006822 ORTHO05D008884 1.3e-176 624.0 686 58.7
MD02G1201200 Malus domestica HOM05D006822 ORTHO05D008884 7.3e-175 618.2 676 58.7
Sc23g0003500 Simmondsia chinensis HOM05D006822 ORTHO05D008884 6.2e-174 615.1 711 54.4
PSO478G2587 Papaver somniferum HOM05D006822 ORTHO05D008884 3.1e-173 612.8 669 55.8
Sed0020963 Sechium edule HOM05D006822 ORTHO05D008884 9.0e-173 611.3 667 58.3
Hund27354 Selenicereus undatus HOM05D006822 ORTHO05D008884 5.8e-172 608.6 691 56.2
Glyma.09G267800 Glycine max HOM05D006822 ORTHO05D008884 7.6e-172 608.2 668 54.9
Glyma.18G222100 Glycine max HOM05D006822 ORTHO05D008884 3.8e-171 605.9 669 55.0
Lalb_Chr01g0021331 Lupinus albus HOM05D006822 ORTHO05D008884 1.9e-170 603.6 663 51.6
HanXRQChr04g0122211 Helianthus annuus HOM05D006822 ORTHO05D008884 2.4e-170 603.2 661 59.8
PGR031G1001 Punica granatum HOM05D006822 ORTHO05D008884 3.2e-170 602.8 671 64.8
Nitab4.5_0013912g0010 Nicotiana tabacum HOM05D006822 ORTHO05D008884 4.2e-170 602.4 527 60.0
Phvul.008G075100 Phaseolus vulgaris HOM05D006822 ORTHO05D008884 5.4e-170 602.1 674 54.5
VMungo1383G2566 Vigna mungo HOM05D006822 ORTHO05D008884 1.3e-168 597.4 667 54.7
Lj1g0013249 Lotus japonicus HOM05D006822 ORTHO05D008884 1.7e-168 597.0 669 56.4
AUR62004233 Chenopodium quinoa HOM05D006822 ORTHO05D008884 3.0e-168 596.3 677 53.5
SGA_v2.0_scaffold95G28889 Striga asiatica HOM05D006822 ORTHO05D008884 3.9e-168 595.9 667 57.6
Eucgr.D02443 Eucalyptus grandis HOM05D006822 ORTHO05D008884 6.6e-168 595.1 676 60.5
EL10Ac1g00937 Beta vulgaris HOM05D006822 ORTHO05D008884 1.5e-167 594.0 677 57.8
AUR62013615 Chenopodium quinoa HOM05D006822 ORTHO05D008884 1.9e-167 593.6 680 53.1
Migut.B01651 Erythranthe guttata HOM05D006822 ORTHO05D008884 2.5e-167 593.2 668 55.1
Ca_07832_v3 Cicer arietinum L. HOM05D006822 ORTHO05D008884 8.1e-166 588.2 666 53.8
COL.COLO4_12575 Corchorus olitorius HOM05D006822 ORTHO05D008884 8.1e-166 588.2 667 58.9
Medtr7g075170 Medicago truncatula HOM05D006822 ORTHO05D008884 1.2e-164 584.3 663 61.7
Prupe.2G147600 Prunus persica HOM05D006822 ORTHO05D008884 3.2e-162 576.2 509 62.7
Psat3g115280 Pisum sativum HOM05D006822 ORTHO05D008884 2.1e-161 573.5 666 61.7
Lsat_1_v5_gn_7_7481 Lactuca sativa HOM05D006822 ORTHO05D008884 3.5e-161 572.8 673 55.6
arahy.Tifrunner.gnm1.ann1.K16L32 Arachis hypogaea HOM05D006822 ORTHO05D008884 1.0e-160 571.2 665 58.9
TPR.G26925 Trifolium pratense HOM05D006822 ORTHO05D008884 1.3e-160 570.9 666 59.6
arahy.Tifrunner.gnm1.ann1.485MU0 Arachis hypogaea HOM05D006822 ORTHO05D008884 6.7e-160 568.5 666 53.9
MBI04_g46545_MAGBIO Magnolia biondii HOM05D006822 ORTHO05D008884 1.9e-159 567.0 578 64.0
Nn1g01174 Nelumbo nucifera HOM05D006822 ORTHO05D008884 3.7e-158 562.8 574 57.5
FAN01G0942 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.2e-153 547.7 512 60.9
THA.LOC104817014 Tarenaya hassleriana HOM05D006822 ORTHO05D008884 2.1e-153 547.0 671 58.4
HPP92_015074 Vanilla planifolia HOM05D006822 ORTHO05D008884 7.9e-153 545.0 682 47.7
FAN06G2864 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.0e-152 544.7 512 60.9
FvH4_7g12110 Fragaria vesca HOM05D006822 ORTHO05D008884 1.3e-152 544.3 512 60.7
RcHm_v2.0_Chr1g0350861 Rosa chinensis HOM05D006822 ORTHO05D008884 2.3e-152 543.5 514 60.3
Os04g0574600 Oryza sativa ssp. japonica HOM05D006822 ORTHO05D008884 7.1e-146 521.9 667 52.0
CDE11G0821 Ceratophyllum demersum HOM05D006822 ORTHO05D008884 1.1e-143 514.6 507 53.8
Aa31LG1G11250 Aethionema arabicum HOM05D006822 ORTHO05D008884 4.3e-143 512.7 695 55.4
Zm00001eb073430 Zea mays HOM05D006822 ORTHO05D008884 9.7e-143 511.5 666 53.3
Sp1g00370 Schrenkiella parvula HOM05D006822 ORTHO05D008884 4.1e-141 506.1 498 58.0
unitig_22.g5376 Utricularia gibba HOM05D006822 ORTHO05D008884 5.3e-141 505.8 668 50.9
AT1G01930 Arabidopsis thaliana HOM05D006822 ORTHO05D008884 8.5e-139 498.4 499 56.3
AL1G10390 Arabidopsis lyrata HOM05D006822 ORTHO05D008884 1.8e-136 490.7 502 56.2
Carub.0001s0031 Capsella rubella HOM05D006822 ORTHO05D008884 3.0e-136 490.0 502 56.4
Lsat_1_v5_gn_3_133341 Lactuca sativa HOM05D006822 ORTHO05D008884 3.0e-136 490.0 497 52.9
Thhalv10007219m.g Eutrema salsugineum HOM05D006822 ORTHO05D008884 4.5e-132 476.1 501 56.5
Medtr7g075185 Medicago truncatula HOM05D006822 ORTHO05D008884 5.9e-132 475.7 500 53.6
ECA236G3401 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.4e-130 471.1 425 59.1
HanXRQChr13g0425441 Helianthus annuus HOM05D006822 ORTHO05D008884 2.7e-129 466.8 496 52.6
C08p53940 Brassica napus HOM05D006822 ORTHO05D008884 1.7e-126 457.6 496 55.4
BolC8t52907H Brassica oleracea HOM05D006822 ORTHO05D008884 1.7e-126 457.6 496 55.4
Eucgr.L02337 Eucalyptus grandis HOM05D006822 ORTHO05D008884 3.1e-125 453.4 595 57.0
BraA09t42269Z Brassica rapa HOM05D006822 ORTHO05D008884 4.5e-124 449.5 495 54.3
SEGI_38546 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 5.9e-124 449.1 683 44.5
FAN03G3111 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.2e-113 414.8 512 50.4
ATR0757G063 Amborella trichopoda HOM05D006822 ORTHO05D008884 1.7e-110 404.4 384 55.5
ECA240G3107 Erigeron canadensis HOM05D006822 ORTHO05D008884 1.0e-104 385.2 470 47.7
COL.COLO4_05508 Corchorus olitorius HOM05D006822 ORTHO05D008884 3.5e-100 370.2 365 56.2
Mapoly0008s0196 Marchantia polymorpha HOM05D006822 ORTHO05D008884 5.6e-98 362.8 631 46.1
Pp3c3_38070 Physcomitrium patens HOM05D006822 ORTHO05D008884 1.3e-91 341.7 518 41.1
AagrBONN_evm.TU.Sc2ySwM_117.565 Anthoceros agrestis HOM05D006822 ORTHO05D008884 5.6e-90 336.3 612 43.3
CARHR000420 Cardamine hirsuta HOM05D006822 ORTHO05D008884 2.8e-73 280.8 292 56.2
FAN10G0810 Fragaria x ananassa HOM05D006822 ORTHO05D008884 1.6e-65 255.0 223 61.9
Cre07.g325715 Chlamydomonas reinhardtii HOM05D006822 ORTHO05D008884 2.6e-55 221.1 556 31.3
CARHR000430 Cardamine hirsuta HOM05D006822 ORTHO05D008884 3.4e-55 220.7 221 53.8
SEGI_35234 Sequoiadendron giganteum HOM05D006822 ORTHO05D008884 1.8e-43 181.8 227 46.7
Cfa022202 Carpinus fangiana HOM05D006822 ORTHO05D004559 3.8e-38 164.1 572 29.2
PRCOL_00005597 Prasinoderma coloniale HOM05D006822 ORTHO05D008884 2.0e-31 141.7 290 35.5
Medtr7g075430 Medicago truncatula HOM05D006822 ORTHO05D008884 9.7e-26 122.9 168 47.6
arahy.Tifrunner.gnm1.ann1.EYK22X Arachis hypogaea HOM05D006822 ORTHO05D008884 1.2e-12 79.3 50 72.0
ATR0757G024 Amborella trichopoda HOM05D006822 ORTHO05D004559 2.1e-12 78.6 187 55.6
CsaV3_4G032230 Cucumis sativus L. HOM05D006822 ORTHO05D008884 3.0e-11 74.7 86 51.2
Medtr7g075450 Medicago truncatula HOM05D006822 ORTHO05D008884 3.3e-10 71.2 88 48.9


User provided reference genes

Program Settings