Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 9.7e-175 616.7 306 100.0
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.4e-173 612.1 306 99.0
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 7.4e-159 563.9 306 91.5
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 1.0e-155 553.5 302 88.4
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 1.0e-155 553.5 302 88.7
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 1.3e-155 553.1 325 84.3
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 1.7e-155 552.7 302 88.1
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 5.0e-155 551.2 302 88.7
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 1.1e-154 550.1 301 88.0
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.4e-154 549.7 302 88.1
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 2.5e-154 548.9 302 87.1
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 9.4e-154 547.0 306 85.0
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 2.7e-153 545.4 302 86.4
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 3.6e-153 545.0 302 85.8
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 1.0e-152 543.5 301 86.7
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 1.8e-152 542.7 303 86.5
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 3.9e-152 541.6 302 87.1
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 3.9e-152 541.6 302 86.4
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 8.8e-152 540.4 301 86.4
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 2.6e-151 538.9 305 84.3
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 2.6e-151 538.9 301 86.0
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 2.6e-151 538.9 311 84.2
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 3.3e-151 538.5 302 85.1
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 9.7e-151 537.0 305 84.6
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 1.3e-150 536.6 301 85.7
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 1.7e-150 536.2 302 85.4
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 2.8e-150 535.4 306 83.0
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 2.8e-150 535.4 302 84.8
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 3.7e-150 535.0 303 84.8
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 6.3e-150 534.3 302 84.4
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 6.3e-150 534.3 302 85.1
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 8.2e-150 533.9 302 84.8
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 1.1e-149 533.5 302 84.4
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 1.8e-149 532.7 305 85.2
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.1e-149 531.9 302 84.8
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 4.1e-149 531.6 301 84.7
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 9.1e-149 530.4 301 85.0
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 1.2e-148 530.0 301 84.4
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.0e-148 529.3 301 83.7
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 2.0e-148 529.3 302 84.8
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 2.6e-148 528.9 301 84.1
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 5.9e-148 527.7 302 83.4
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 2.2e-147 525.8 342 76.3
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 2.2e-147 525.8 302 82.1
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 3.8e-147 525.0 301 83.4
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 3.8e-147 525.0 301 83.4
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 5.0e-147 524.6 301 83.4
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 8.5e-147 523.9 301 83.1
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 1.1e-146 523.5 304 81.9
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 1.5e-146 523.1 301 83.1
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 1.9e-146 522.7 302 82.8
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 3.2e-146 521.9 302 82.8
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 4.2e-146 521.5 302 82.1
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 5.5e-146 521.2 302 82.5
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 7.2e-146 520.8 302 82.5
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 7.2e-146 520.8 302 82.1
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 1.6e-145 519.6 304 81.6
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 3.6e-145 518.5 301 81.1
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 3.6e-145 518.5 301 82.1
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 8.0e-145 517.3 302 81.5
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 2.3e-144 515.8 302 81.1
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 3.0e-144 515.4 305 82.6
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 5.2e-144 514.6 302 82.1
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.2e-143 513.5 302 81.5
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.5e-143 513.1 302 81.1
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.3e-143 511.9 302 81.1
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 3.3e-143 511.9 302 81.1
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.3e-143 511.9 302 80.5
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 4.4e-143 511.5 302 80.5
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 7.5e-143 510.8 302 81.1
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 1.3e-142 510.0 348 75.6
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 6.3e-142 507.7 302 80.5
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 3.1e-141 505.4 303 82.2
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 2.0e-140 502.7 302 80.1
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 3.8e-139 498.4 304 78.9
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.9e-138 496.1 336 73.5
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 6.8e-136 487.6 270 88.1
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.5e-135 486.5 301 76.1
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 4.4e-135 485.0 270 87.8
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 8.3e-134 480.7 301 76.7
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 2.3e-131 472.6 280 79.3
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 6.1e-129 464.5 302 75.2
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 4.1e-125 451.8 302 73.2
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 3.5e-124 448.7 253 85.0
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 3.8e-123 445.3 308 72.7
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 5.6e-122 441.4 252 83.7
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 4.0e-120 435.3 302 65.6
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 4.0e-120 435.3 302 65.6
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 5.2e-120 434.9 302 66.9
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 1.7e-118 429.9 302 66.6
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 6.4e-118 427.9 277 74.4
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 6.0e-116 421.4 306 69.6
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 6.0e-108 394.8 281 69.0
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 1.1e-106 390.6 223 85.2
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 3.3e-98 362.5 200 88.5
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 6.4e-94 348.2 302 54.3
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 9.2e-93 344.4 306 53.9
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 4.7e-89 332.0 184 87.0
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 3.1e-88 329.3 259 63.7
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.9e-85 320.1 189 82.5
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 2.1e-84 316.6 307 56.7
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 5.1e-83 312.0 226 70.4
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 1.2e-79 300.8 311 49.5
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 4.5e-79 298.9 241 60.2
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 1.3e-70 270.8 205 66.8
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.8e-65 252.3 199 66.8
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 7.1e-61 238.4 124 86.3
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 7.1e-61 238.4 124 86.3
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 5.9e-55 218.8 122 80.3
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 1.7e-54 217.2 122 79.5
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 2.3e-51 206.8 182 62.6
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 1.1e-48 198.0 137 72.3
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 4.5e-39 166.0 103 68.9
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.0e-38 164.9 301 36.2
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 1.0e-38 164.9 307 32.6
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 2.0e-34 150.6 133 61.7
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 2.0e-34 150.6 79 88.6
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 5.7e-34 149.1 144 56.2
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 4.8e-33 146.0 102 70.6
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 6.5e-30 135.6 117 62.4
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 1.9e-29 134.0 181 44.2
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 2.0e-26 124.0 102 63.7
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 4.8e-25 119.4 66 80.3
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 5.4e-24 115.9 170 43.5
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 2.9e-22 110.2 114 53.5
arahy.Tifrunner.gnm1.ann1.U5A9T5 Arachis hypogaea HOM05D000321 ORTHO05D000204 3.2e-21 106.7 181 39.2
Duzib132G0670 Durio zibethinus HOM05D006147 ORTHO05D007501 1.8e-19 100.9 83 62.7
MBI05_g17912_MAGBIO Magnolia biondii HOM05D006147 ORTHO05D007501 7.7e-15 85.5 48 83.3
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 2.1e-12 77.4 64 59.4
MELO3C013418.2 Cucumis melo HOM05D006147 ORTHO05D007501 4.1e-08 63.2 58 55.2
Lj1g0008117 Lotus japonicus HOM05D001625 ORTHO05D008114 1.7e-06 57.8 222 25.7


User provided reference genes

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