Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016381 Camellia sinensis var. sinensis HOM05D004621 ORTHO05D005817 5.2e-57 224.2 114 100.0
Rhsim05G0135500 Rhododendron simsii HOM05D004621 ORTHO05D005817 7.6e-24 114.0 81 77.8
vmacro19714 Vaccinium macrocarpon HOM05D004621 ORTHO05D005817 6.4e-23 110.9 80 73.8
Hma1.2p1_0231F.1_g097600 Hydrangea macrophylla HOM05D004621 ORTHO05D005817 8.4e-23 110.5 82 78.0
Hma1.2p1_0196F.1_g084950 Hydrangea macrophylla HOM05D004621 ORTHO05D005817 1.9e-22 109.4 84 73.8
Manes.16G083500 Manihot esculenta HOM05D004621 ORTHO05D005817 4.6e-21 104.8 77 72.7
Nitab4.5_0000286g0110 Nicotiana tabacum HOM05D004621 ORTHO05D005817 4.6e-21 104.8 80 70.0
COL.COLO4_21108 Corchorus olitorius HOM05D004621 ORTHO05D005817 6.0e-21 104.4 70 77.1
Cfa017997 Carpinus fangiana HOM05D004621 ORTHO05D005817 7.8e-21 104.0 83 71.1
Haze_18137 Corylus avellana HOM05D004621 ORTHO05D005817 1.3e-20 103.2 83 69.9
Sabra06G0173000 Salix brachista HOM05D004621 ORTHO05D005817 1.3e-20 103.2 84 75.0
GSVIVG01035427001 Vitis vinifera HOM05D004621 ORTHO05D005817 1.3e-20 103.2 80 70.0
CANSAT21G1762 Cannabis sativa HOM05D004621 ORTHO05D005817 1.7e-20 102.8 79 69.6
Nitab4.5_0009148g0020 Nicotiana tabacum HOM05D004621 ORTHO05D005817 1.7e-20 102.8 80 70.0
Duzib168G0020 Durio zibethinus HOM05D004621 ORTHO05D005817 3.0e-20 102.1 67 79.1
Peaxi162Scf01253g00025 Petunia axillaris HOM05D004621 ORTHO05D005817 3.9e-20 101.7 78 67.9
Thecc.09G059300 Theobroma cacao HOM05D004621 ORTHO05D005817 3.9e-20 101.7 70 75.7
unitig_88.g27672 Utricularia gibba HOM05D004621 ORTHO05D005817 5.1e-20 101.3 80 70.0
Eucgr.C00676 Eucalyptus grandis HOM05D004621 ORTHO05D005817 6.6e-20 100.9 69 75.4
Sopen08g017990 Solanum pennellii HOM05D004621 ORTHO05D005817 6.6e-20 100.9 80 67.5
EL10Ac2g03807 Beta vulgaris HOM05D004621 ORTHO05D005817 1.1e-19 100.1 67 79.1
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 1.1e-19 100.1 80 68.8
Ah.10g034040 Amaranthus hybridus HOM05D004621 ORTHO05D005817 1.5e-19 99.8 85 68.2
ClCG05G018120 Citrullus lanatus HOM05D004621 ORTHO05D005817 1.5e-19 99.8 79 67.1
ECA234G1492 Erigeron canadensis HOM05D004621 ORTHO05D005817 1.5e-19 99.8 80 67.5
HanXRQChr10g0309801 Helianthus annuus HOM05D004621 ORTHO05D005817 1.5e-19 99.8 76 73.7
SalBow4G1696 Salvia bowleyana HOM05D004621 ORTHO05D005817 1.5e-19 99.8 80 65.0
CsaV3_4G035890 Cucumis sativus L. HOM05D004621 ORTHO05D005817 1.9e-19 99.4 79 64.6
Sed0025089 Sechium edule HOM05D004621 ORTHO05D005817 1.9e-19 99.4 69 73.9
Solyc08g062560.4 Solanum lycopersicum HOM05D004621 ORTHO05D005817 1.9e-19 99.4 80 66.2
Dinv12464 Davidia involucrata HOM05D004621 ORTHO05D005817 2.5e-19 99.0 80 68.8
TWI32G0723 Tripterygium wilfordii HOM05D004621 ORTHO05D005817 2.5e-19 99.0 83 71.1
Atru.chr7.1890 Acer truncatum HOM05D004621 ORTHO05D005817 3.3e-19 98.6 83 66.3
Atru.chr7.1918 Acer truncatum HOM05D004621 ORTHO05D005817 3.3e-19 98.6 83 66.3
Lsat_1_v5_gn_5_78680 Lactuca sativa HOM05D004621 ORTHO05D005817 3.3e-19 98.6 80 68.8
Potri.006G224000 Populus trichocarpa HOM05D004621 ORTHO05D005817 3.3e-19 98.6 84 72.6
SGA_v2.0_scaffold20G09183 Striga asiatica HOM05D004621 ORTHO05D005817 3.3e-19 98.6 82 70.7
PGSC0003DMG400008208 Solanum tuberosum HOM05D004621 ORTHO05D005817 5.6e-19 97.8 80 65.0
Migut.A00101 Erythranthe guttata HOM05D004621 ORTHO05D005817 9.6e-19 97.1 78 67.9
FvH4_2g31380 Fragaria vesca HOM05D004621 ORTHO05D005817 9.6e-19 97.1 81 67.9
FAN24G3059 Fragaria x ananassa HOM05D004621 ORTHO05D005817 9.6e-19 97.1 81 67.9
Oeu018033.1 Olea europaea HOM05D004621 ORTHO05D005817 9.6e-19 97.1 78 69.2
PSO210G1875 Papaver somniferum HOM05D004621 ORTHO05D005817 9.6e-19 97.1 67 73.1
PSO210G2988 Papaver somniferum HOM05D004621 ORTHO05D005817 9.6e-19 97.1 67 73.1
Prupe.1G407400 Prunus persica HOM05D004621 ORTHO05D005817 9.6e-19 97.1 86 62.8
RcHm_v2.0_Chr6g0311441 Rosa chinensis HOM05D004621 ORTHO05D005817 9.6e-19 97.1 81 70.4
FAN15G0359 Fragaria x ananassa HOM05D004621 ORTHO05D005817 1.3e-18 96.7 81 67.9
Gohir.A05G040100 Gossypium hirsutum HOM05D004621 ORTHO05D005817 1.3e-18 96.7 70 74.3
Gohir.D05G041600 Gossypium hirsutum HOM05D004621 ORTHO05D005817 1.3e-18 96.7 70 74.3
Gorai.009G042200 Gossypium raimondii HOM05D004621 ORTHO05D005817 1.3e-18 96.7 70 74.3
FAN27G1750 Fragaria x ananassa HOM05D004621 ORTHO05D005817 1.6e-18 96.3 81 67.9
MD15G1053900 Malus domestica HOM05D004621 ORTHO05D005817 1.6e-18 96.3 69 72.5
PGR031G3863 Punica granatum HOM05D004621 ORTHO05D005817 1.6e-18 96.3 80 70.0
FAN20G0813 Fragaria x ananassa HOM05D004621 ORTHO05D005817 2.1e-18 95.9 81 67.9
Ciclev10010180m.g Citrus clementina HOM05D004621 ORTHO05D005817 2.8e-18 95.5 82 68.3
MELO3C016896.2 Cucumis melo HOM05D004621 ORTHO05D005817 2.8e-18 95.5 76 67.1
Nn6g35569 Nelumbo nucifera HOM05D004621 ORTHO05D005817 2.8e-18 95.5 79 67.1
ATR0051G016 Amborella trichopoda HOM05D004621 ORTHO05D005817 4.8e-18 94.7 65 80.0
Aqoxy2G03981 Aquilegia oxysepala HOM05D004621 ORTHO05D005817 4.8e-18 94.7 78 66.7
Lj8A491T35 Lonicera japonica HOM05D004621 ORTHO05D005817 4.8e-18 94.7 58 81.0
THA.LOC104811228 Tarenaya hassleriana HOM05D004621 ORTHO05D005817 4.8e-18 94.7 68 72.1
HPP92_023996 Vanilla planifolia HOM05D004621 ORTHO05D005817 6.2e-18 94.4 68 75.0
VMungo1309G3014 Vigna mungo HOM05D004621 ORTHO05D005817 8.1e-18 94.0 56 82.1
Cc08_g11070 Coffea canephora HOM05D004621 ORTHO05D005817 1.1e-17 93.6 78 67.9
MBI05_g23629_MAGBIO Magnolia biondii HOM05D004621 ORTHO05D005817 1.1e-17 93.6 82 64.6
arahy.Tifrunner.gnm1.ann1.I8I12Q Arachis hypogaea HOM05D004621 ORTHO05D005817 1.4e-17 93.2 78 66.7
arahy.Tifrunner.gnm1.ann1.T7L0BR Arachis hypogaea HOM05D004621 ORTHO05D005817 1.4e-17 93.2 78 66.7
Psat5g035360 Pisum sativum HOM05D004621 ORTHO05D005817 1.4e-17 93.2 56 80.4
Lj8A495T43 Lonicera japonica HOM05D004621 ORTHO05D005817 1.8e-17 92.8 87 64.4
Hund19431 Selenicereus undatus HOM05D004621 ORTHO05D005817 1.8e-17 92.8 71 73.2
HPP92_023989 Vanilla planifolia HOM05D004621 ORTHO05D005817 1.8e-17 92.8 68 73.5
Sc09g0009980 Simmondsia chinensis HOM05D004621 ORTHO05D005817 2.4e-17 92.4 63 74.6
TPR.G3533 Trifolium pratense HOM05D004621 ORTHO05D005817 5.3e-17 91.3 56 78.6
Glyma.04G054300 Glycine max HOM05D004621 ORTHO05D005817 6.9e-17 90.9 56 76.8
FAN17G2977 Fragaria x ananassa HOM05D004621 ORTHO05D005817 9.0e-17 90.5 65 70.8
Os02g0217800 Oryza sativa ssp. japonica HOM05D004621 ORTHO05D005817 9.0e-17 90.5 56 80.4
MSTRG.25978 Avicennia marina HOM05D004621 ORTHO05D005817 1.2e-16 90.1 81 61.7
Glyma.06G054600 Glycine max HOM05D004621 ORTHO05D005817 1.2e-16 90.1 56 76.8
Medtr3g104760 Medicago truncatula HOM05D004621 ORTHO05D005817 1.2e-16 90.1 56 78.6
AUR62009103 Chenopodium quinoa HOM05D004621 ORTHO05D005817 2.6e-16 89.0 61 68.9
AUR62020569 Chenopodium quinoa HOM05D004621 ORTHO05D005817 2.6e-16 89.0 61 68.9
Ca_15845_v3 Cicer arietinum L. HOM05D004621 ORTHO05D005817 2.6e-16 89.0 56 78.6
QL02p000390 Quercus lobata HOM05D004621 ORTHO05D005817 2.6e-16 89.0 60 76.7
Aa31LG1G21020 Aethionema arabicum HOM05D004621 ORTHO05D005817 3.4e-16 88.6 75 62.7
Cpa.g.sc126.50 Carica papaya HOM05D004621 ORTHO05D005817 3.4e-16 88.6 80 61.2
Lj1g0023758 Lotus japonicus HOM05D004621 ORTHO05D005817 4.5e-16 88.2 56 75.0
Lalb_Chr11g0063251 Lupinus albus HOM05D004621 ORTHO05D005817 5.8e-16 87.8 56 71.4
Phvul.009G080100 Phaseolus vulgaris HOM05D004621 ORTHO05D005817 5.8e-16 87.8 56 75.0
CARHR187480 Cardamine hirsuta HOM05D004621 ORTHO05D005817 7.6e-16 87.4 65 69.2
Sp2g21560 Schrenkiella parvula HOM05D004621 ORTHO05D005817 7.6e-16 87.4 80 61.2
Zm00001eb240170 Zea mays HOM05D004621 ORTHO05D005817 9.9e-16 87.0 86 61.6
BcaB07g29951 Brassica carinata HOM05D004621 ORTHO05D005817 1.3e-15 86.7 56 76.8
Thhalv10004076m.g Eutrema salsugineum HOM05D004621 ORTHO05D005817 1.3e-15 86.7 65 69.2
SEGI_04699 Sequoiadendron giganteum HOM05D004621 ORTHO05D005817 1.3e-15 86.7 66 72.7
BcaC03g17845 Brassica carinata HOM05D004621 ORTHO05D005817 1.7e-15 86.3 80 60.0
C02p58840 Brassica napus HOM05D004621 ORTHO05D005817 1.7e-15 86.3 80 60.0
AL6G38190 Arabidopsis lyrata HOM05D004621 ORTHO05D005817 2.2e-15 85.9 58 72.4
A02p39240 Brassica napus HOM05D004621 ORTHO05D005817 2.2e-15 85.9 80 60.0
BraA02t08889Z Brassica rapa HOM05D004621 ORTHO05D005817 2.2e-15 85.9 80 60.0
Atru.chr7.1889 Acer truncatum HOM05D004621 ORTHO05D005817 3.8e-15 85.1 101 50.5
Atru.chr7.1917 Acer truncatum HOM05D004621 ORTHO05D005817 3.8e-15 85.1 101 50.5
BolC2t11942H Brassica oleracea HOM05D004621 ORTHO05D005817 3.8e-15 85.1 80 58.8
AT5G26180 Arabidopsis thaliana HOM05D004621 ORTHO05D005817 4.9e-15 84.7 55 76.4
BraA09t36240Z Brassica rapa HOM05D004621 ORTHO05D005817 4.9e-15 84.7 76 59.2
DCAR_007741 Daucus carota HOM05D004621 ORTHO05D005817 4.9e-15 84.7 60 71.7
BcaC04g23605 Brassica carinata HOM05D004621 ORTHO05D005817 8.4e-15 84.0 76 57.9
Carub.0006s2397 Capsella rubella HOM05D004621 ORTHO05D005817 8.4e-15 84.0 72 63.9
A09p05980 Brassica napus HOM05D004621 ORTHO05D005817 1.1e-14 83.6 76 57.9
C09p06540 Brassica napus HOM05D004621 ORTHO05D005817 2.4e-14 82.4 76 56.6
BolC9t53577H Brassica oleracea HOM05D004621 ORTHO05D005817 3.2e-14 82.0 76 56.6
BcaB04g19747 Brassica carinata HOM05D004621 ORTHO05D005817 7.1e-14 80.9 58 70.7
BcaB04g19746 Brassica carinata HOM05D004621 ORTHO05D005817 9.3e-14 80.5 77 62.3
SHI18707 Sapria himalayana HOM05D004621 ORTHO05D005817 2.1e-13 79.3 66 63.6
BcaB07g29949 Brassica carinata HOM05D004621 ORTHO05D005817 4.8e-10 68.2 48 66.7
SMO169G0045 Selaginella moellendorffii HOM05D004621 ORTHO05D005817 2.6e-08 62.4 51 58.8
Pp3c1_12750 Physcomitrium patens HOM05D004621 ORTHO05D005817 9.9e-08 60.5 48 60.4
FAN02G1466 Fragaria x ananassa HOM05D004621 ORTHO05D025578 6.4e-07 57.8 44 68.2
FAN02G1541 Fragaria x ananassa HOM05D004621 ORTHO05D005817 6.4e-07 57.8 45 64.4
Mapoly0057s0032 Marchantia polymorpha HOM05D004621 ORTHO05D005817 7.1e-06 54.3 48 52.1


User provided reference genes

Program Settings