Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016351 Camellia sinensis var. sinensis HOM05D006655 ORTHO05D007986 2.0e-49 198.7 96 100.0
CSS0020244 Camellia sinensis var. sinensis HOM05D006655 ORTHO05D007986 1.7e-48 195.7 96 99.0
Potri.001G253900 Populus trichocarpa HOM05D006655 ORTHO05D007986 9.2e-23 110.2 70 78.6
Sabra16G0154600 Salix brachista HOM05D006655 ORTHO05D007986 1.2e-22 109.8 70 78.6
Hma1.2p1_0910F.1_g235840 Hydrangea macrophylla HOM05D006655 ORTHO05D007986 1.6e-22 109.4 53 94.3
TAR623G0880 Trochodendron aralioides HOM05D006655 ORTHO05D007986 1.6e-22 109.4 53 96.2
PSO384G1723 Papaver somniferum HOM05D006655 ORTHO05D007986 2.1e-22 109.0 70 77.1
Cpa.g.sc84.14 Carica papaya HOM05D006655 ORTHO05D007986 2.7e-22 108.6 53 96.2
Ciclev10015876m.g Citrus clementina HOM05D006655 ORTHO05D007986 2.7e-22 108.6 53 98.1
PSO339G6694 Papaver somniferum HOM05D006655 ORTHO05D007986 2.7e-22 108.6 70 77.1
TWI38G0712 Tripterygium wilfordii HOM05D006655 ORTHO05D007986 2.7e-22 108.6 53 98.1
GSVIVG01037232001 Vitis vinifera HOM05D006655 ORTHO05D007986 2.7e-22 108.6 53 98.1
Dinv36200 Davidia involucrata HOM05D006655 ORTHO05D007986 3.5e-22 108.2 52 98.1
Manes.01G182300 Manihot esculenta HOM05D006655 ORTHO05D007986 4.6e-22 107.8 53 94.3
Atru.chr3.2616 Acer truncatum HOM05D006655 ORTHO05D007986 6.0e-22 107.5 53 96.2
Oeu061293.2 Olea europaea HOM05D006655 ORTHO05D007986 6.0e-22 107.5 53 94.3
Rhsim13G0216500 Rhododendron simsii HOM05D006655 ORTHO05D007986 6.0e-22 107.5 53 96.2
Solyc01g008920.4 Solanum lycopersicum HOM05D006655 ORTHO05D007986 7.8e-22 107.1 53 94.3
Sopen01g004410 Solanum pennellii HOM05D006655 ORTHO05D007986 7.8e-22 107.1 53 94.3
PGSC0003DMG402022708 Solanum tuberosum HOM05D006655 ORTHO05D007986 7.8e-22 107.1 53 94.3
Cc01_g05880 Coffea canephora HOM05D006655 ORTHO05D007986 1.0e-21 106.7 53 92.5
Haze_23196 Corylus avellana HOM05D006655 ORTHO05D007986 1.0e-21 106.7 53 94.3
Peaxi162Scf00050g00119 Petunia axillaris HOM05D006655 ORTHO05D007986 1.0e-21 106.7 53 94.3
Actinidia06937 Actinidia chinensis HOM05D006655 ORTHO05D007986 1.3e-21 106.3 53 94.3
MSTRG.18452 Avicennia marina HOM05D006655 ORTHO05D007986 1.3e-21 106.3 53 96.2
RcHm_v2.0_Chr5g0050831 Rosa chinensis HOM05D006655 ORTHO05D007986 1.3e-21 106.3 70 77.1
SGA_v2.0_scaffold8G04557 Striga asiatica HOM05D006655 ORTHO05D007986 1.3e-21 106.3 53 92.5
CAN.G379.22 Capsicum annuum HOM05D006655 ORTHO05D007986 1.7e-21 105.9 53 92.5
FvH4_3g28150 Fragaria vesca HOM05D006655 ORTHO05D007986 1.7e-21 105.9 52 96.2
FAN11G1204 Fragaria x ananassa HOM05D006655 ORTHO05D007986 1.7e-21 105.9 52 96.2
Gohir.D09G107900 Gossypium hirsutum HOM05D006655 ORTHO05D007986 1.7e-21 105.9 53 94.3
Gorai.006G125600 Gossypium raimondii HOM05D006655 ORTHO05D007986 1.7e-21 105.9 53 94.3
HanXRQChr01g0023951 Helianthus annuus HOM05D006655 ORTHO05D007986 1.7e-21 105.9 70 77.1
Thecc.09G243400 Theobroma cacao HOM05D006655 ORTHO05D007986 1.7e-21 105.9 53 94.3
Cfa009833 Carpinus fangiana HOM05D006655 ORTHO05D007986 2.3e-21 105.5 53 90.6
Duzib168G2063 Durio zibethinus HOM05D006655 ORTHO05D007986 2.3e-21 105.5 53 92.5
Duzib170G0104 Durio zibethinus HOM05D006655 ORTHO05D007986 3.0e-21 105.1 53 94.3
Gohir.A09G111300 Gossypium hirsutum HOM05D006655 ORTHO05D007986 3.0e-21 105.1 53 92.5
Eucgr.B03717 Eucalyptus grandis HOM05D006655 ORTHO05D007986 3.9e-21 104.8 70 74.3
Nn2g14958 Nelumbo nucifera HOM05D006655 ORTHO05D007986 3.9e-21 104.8 53 90.6
PGR102G2275 Punica granatum HOM05D006655 ORTHO05D007986 3.9e-21 104.8 70 75.7
COL.COLO4_04115 Corchorus olitorius HOM05D006655 ORTHO05D007986 5.1e-21 104.4 53 90.6
Aqoxy1G00312 Aquilegia oxysepala HOM05D006655 ORTHO05D007986 6.6e-21 104.0 53 90.6
Migut.D00645 Erythranthe guttata HOM05D006655 ORTHO05D007986 6.6e-21 104.0 53 92.5
ECA248G0748 Erigeron canadensis HOM05D006655 ORTHO05D007986 8.6e-21 103.6 70 74.3
Phvul.010G032900 Phaseolus vulgaris HOM05D006655 ORTHO05D007986 8.6e-21 103.6 70 72.9
Prupe.4G258400 Prunus persica HOM05D006655 ORTHO05D007986 8.6e-21 103.6 70 74.3
QL01p017764 Quercus lobata HOM05D006655 ORTHO05D007986 8.6e-21 103.6 53 90.6
VMungo0331G0819 Vigna mungo HOM05D006655 ORTHO05D007986 8.6e-21 103.6 70 72.9
CiPaw.14G115600 Carya illinoinensis HOM05D006655 ORTHO05D007986 1.1e-20 103.2 70 77.1
MELO3C015152.2 Cucumis melo HOM05D006655 ORTHO05D007986 1.1e-20 103.2 53 86.8
CsaV3_1G043150 Cucumis sativus L. HOM05D006655 ORTHO05D007986 1.1e-20 103.2 53 86.8
FAN16G3233 Fragaria x ananassa HOM05D006655 ORTHO05D007986 1.1e-20 103.2 52 94.2
FAN21G0719 Fragaria x ananassa HOM05D006655 ORTHO05D007986 1.1e-20 103.2 52 94.2
MD03G1169200 Malus domestica HOM05D006655 ORTHO05D007986 1.1e-20 103.2 52 94.2
Sc06g0004660 Simmondsia chinensis HOM05D006655 ORTHO05D007986 1.1e-20 103.2 53 90.6
Aa31LG2G18820 Aethionema arabicum HOM05D006655 ORTHO05D007986 1.5e-20 102.8 53 90.6
ClCG03G012910 Citrullus lanatus HOM05D006655 ORTHO05D007986 1.5e-20 102.8 53 86.8
Lj1A304G27 Lonicera japonica HOM05D006655 ORTHO05D007986 1.5e-20 102.8 53 92.5
AL7G20510 Arabidopsis lyrata HOM05D006655 ORTHO05D007986 1.9e-20 102.4 53 88.7
AT4G31530 Arabidopsis thaliana HOM05D006655 ORTHO05D007986 1.9e-20 102.4 53 88.7
Carub.0007s0904 Capsella rubella HOM05D006655 ORTHO05D007986 1.9e-20 102.4 53 88.7
Thhalv10025684m.g Eutrema salsugineum HOM05D006655 ORTHO05D007986 1.9e-20 102.4 53 88.7
Sed0012681 Sechium edule HOM05D006655 ORTHO05D007986 1.9e-20 102.4 53 86.8
HPP92_025004 Vanilla planifolia HOM05D006655 ORTHO05D007986 1.9e-20 102.4 53 88.7
Zm00001eb017170 Zea mays HOM05D006655 ORTHO05D007986 2.5e-20 102.1 53 83.0
Zm00001eb046530 Zea mays HOM05D006655 ORTHO05D007986 2.5e-20 102.1 53 83.0
Glyma.03G092500 Glycine max HOM05D006655 ORTHO05D007986 3.3e-20 101.7 53 86.8
Lsat_1_v5_gn_1_77640 Lactuca sativa HOM05D006655 ORTHO05D007986 3.3e-20 101.7 53 90.6
Lj3g0004618 Lotus japonicus HOM05D006655 ORTHO05D007986 3.3e-20 101.7 53 86.8
THA.LOC104816930 Tarenaya hassleriana HOM05D006655 ORTHO05D007986 3.3e-20 101.7 53 84.9
Zm00001eb394530 Zea mays HOM05D006655 ORTHO05D007986 3.3e-20 101.7 53 83.0
EL10Ac4g10174 Beta vulgaris HOM05D006655 ORTHO05D007986 4.3e-20 101.3 53 83.0
BcaNung04132 Brassica carinata HOM05D006655 ORTHO05D007986 4.3e-20 101.3 53 88.7
C07p58710 Brassica napus HOM05D006655 ORTHO05D007986 4.3e-20 101.3 53 88.7
BolC7t46320H Brassica oleracea HOM05D006655 ORTHO05D007986 4.3e-20 101.3 53 88.7
Sp7g29360 Schrenkiella parvula HOM05D006655 ORTHO05D007986 5.6e-20 100.9 53 86.8
Glyma.16G082200 Glycine max HOM05D006655 ORTHO05D007986 7.3e-20 100.5 53 86.8
CARHR239410 Cardamine hirsuta HOM05D006655 ORTHO05D007986 9.5e-20 100.1 53 86.8
arahy.Tifrunner.gnm1.ann1.760I9C Arachis hypogaea HOM05D006655 ORTHO05D007986 1.2e-19 99.8 53 86.8
A03p60830 Brassica napus HOM05D006655 ORTHO05D007986 1.2e-19 99.8 53 86.8
BraA03t15119Z Brassica rapa HOM05D006655 ORTHO05D007986 1.2e-19 99.8 53 86.8
AUR62000173 Chenopodium quinoa HOM05D006655 ORTHO05D007986 1.2e-19 99.8 53 88.7
Ca_23178_v3 Cicer arietinum L. HOM05D006655 ORTHO05D007986 1.2e-19 99.8 53 86.8
Lalb_Chr12g0210111 Lupinus albus HOM05D006655 ORTHO05D007986 3.6e-19 98.2 70 68.6
MBI13_g19378_MAGBIO Magnolia biondii HOM05D006655 ORTHO05D007986 3.6e-19 98.2 53 84.9
MBI13_g19379_MAGBIO Magnolia biondii HOM05D006655 ORTHO05D007986 3.6e-19 98.2 53 84.9
AUR62039838 Chenopodium quinoa HOM05D006655 ORTHO05D007986 4.7e-19 97.8 53 84.9
Hund21967 Selenicereus undatus HOM05D006655 ORTHO05D007986 4.7e-19 97.8 53 86.8
Psat2g068960 Pisum sativum HOM05D006655 ORTHO05D007986 6.2e-19 97.4 53 84.9
ATR0721G096 Amborella trichopoda HOM05D006655 ORTHO05D007986 8.1e-19 97.1 53 84.9
CDE08G0434 Ceratophyllum demersum HOM05D006655 ORTHO05D007986 1.4e-18 96.3 53 79.2
Medtr8g010700 Medicago truncatula HOM05D006655 ORTHO05D007986 1.4e-18 96.3 53 81.1
DCAR_029978 Daucus carota HOM05D006655 ORTHO05D007986 1.8e-18 95.9 70 70.0
Pp3c18_4890 Physcomitrium patens HOM05D006655 ORTHO05D007986 3.1e-18 95.1 53 79.2
TPR.G24582 Trifolium pratense HOM05D006655 ORTHO05D007986 3.1e-18 95.1 53 79.2
AagrBONN_evm.TU.Sc2ySwM_228.2449 Anthoceros agrestis HOM05D006655 ORTHO05D007986 5.2e-18 94.4 70 62.9
SMO347G0004 Selaginella moellendorffii HOM05D006655 ORTHO05D007986 3.4e-17 91.7 70 62.9
SEGI_01007 Sequoiadendron giganteum HOM05D006655 ORTHO05D007986 3.4e-17 91.7 53 79.2
Mapoly0096s0016 Marchantia polymorpha HOM05D006655 ORTHO05D007986 1.4e-15 86.3 53 69.8
Nitab4.5_0000718g0100 Nicotiana tabacum HOM05D006655 ORTHO05D007986 4.3e-12 74.7 37 91.9
Nitab4.5_0014839g0010 Nicotiana tabacum HOM05D006655 ORTHO05D007986 4.3e-12 74.7 37 91.9
vmacro04005 Vaccinium macrocarpon HOM05D006655 ORTHO05D007986 2.8e-11 72.0 40 85.0
CBR_g3452 Chara braunii HOM05D006655 ORTHO05D007986 5.2e-10 67.8 52 50.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.5e-09 66.2 40 70.0
arahy.Tifrunner.gnm1.ann1.PH26XM Arachis hypogaea HOM05D006655 ORTHO05D007986 7.6e-09 63.9 35 80.0
Cre03.g181250 Chlamydomonas reinhardtii HOM05D006655 ORTHO05D007986 7.6e-09 63.9 51 52.9
MCO02G084 Micromonas commoda HOM05D006655 ORTHO05D007986 9.9e-09 63.5 54 57.4


User provided reference genes

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