Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 0.0e+00 1475.7 810 100.0
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 0.0e+00 1436.0 810 96.5
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 4.0e-111 406.8 949 39.2
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.3e-97 360.5 888 39.5
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 3.7e-64 250.8 864 35.0
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 5.0e-45 187.2 1063 29.2
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.7e-40 172.2 131 77.1
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 1.8e-39 168.7 632 32.8
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.0e-38 165.2 344 43.9
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 2.7e-38 164.9 821 30.7
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.3e-37 162.5 208 53.8
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 8.0e-35 153.3 477 35.2
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 8.0e-35 153.3 849 29.0
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 3.4e-33 147.9 492 31.5
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 4.4e-33 147.5 366 34.7
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.8e-33 146.4 378 35.7
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.3e-32 146.0 871 29.5
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 3.7e-32 144.4 362 35.1
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 6.3e-32 143.7 380 35.3
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.1e-31 142.9 428 31.1
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 4.1e-31 141.0 847 28.1
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 7.0e-31 140.2 445 32.6
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.9e-30 137.1 357 37.5
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.9e-29 134.8 828 28.9
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 2.9e-29 134.8 845 29.6
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.6e-29 133.7 856 28.3
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.1e-28 132.9 516 30.0
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 1.6e-27 129.0 847 27.4
Actinidia04568 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.1e-27 128.6 497 33.0
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 8.0e-27 126.7 233 41.6
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 2.3e-26 125.2 375 33.9
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 2.3e-26 125.2 543 30.9
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 4.0e-26 124.4 295 38.3
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 6.8e-26 123.6 128 53.1
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 6.8e-26 123.6 279 38.0
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 4.4e-25 120.9 324 36.4
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.7e-25 120.6 830 27.2
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 2.9e-24 118.2 401 34.7
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.8e-23 115.5 822 27.6
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.4e-23 115.2 530 28.7
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 3.2e-23 114.8 377 32.6
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 3.2e-23 114.8 305 34.1
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 4.1e-23 114.4 310 34.2
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.2e-22 112.8 854 27.5
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.6e-22 112.5 215 39.5
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.6e-22 112.5 485 31.1
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 2.7e-22 111.7 299 35.8
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 2.7e-22 111.7 855 27.5
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 3.5e-22 111.3 857 26.6
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.5e-22 111.3 299 35.5
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.0e-21 109.8 449 30.3
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.0e-21 109.8 309 35.0
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.3e-21 109.4 334 33.8
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 3.9e-21 107.8 315 34.9
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 5.0e-21 107.5 372 33.6
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 8.6e-21 106.7 875 27.8
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.9e-20 105.5 329 31.6
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.9e-20 105.5 352 33.5
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.3e-20 104.8 806 26.6
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 5.6e-20 104.0 865 26.0
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 5.6e-20 104.0 281 37.4
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 7.3e-20 103.6 291 35.7
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 9.5e-20 103.2 129 48.1
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.2e-19 102.8 320 30.3
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 3.6e-19 101.3 271 36.5
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.6e-19 101.3 843 25.9
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.7e-19 100.9 361 30.2
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.7e-19 100.9 112 54.5
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 6.2e-19 100.5 836 26.7
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 8.0e-19 100.1 144 52.1
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 1.1e-18 99.8 363 32.8
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.1e-18 99.8 178 41.0
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.8e-18 99.0 267 34.1
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 3.1e-18 98.2 338 31.1
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 3.1e-18 98.2 836 26.0
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 5.2e-18 97.4 248 36.3
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 8.9e-18 96.7 673 29.0
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 8.9e-18 96.7 557 27.8
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 8.9e-18 96.7 473 27.5
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 1.2e-17 96.3 551 28.3
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 1.2e-17 96.3 363 32.8
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.5e-17 95.9 305 33.4
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 2.0e-17 95.5 624 27.9
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 2.0e-17 95.5 940 25.2
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 3.4e-17 94.7 215 38.6
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 4.4e-17 94.4 320 32.2
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 4.4e-17 94.4 603 27.7
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 5.8e-17 94.0 257 35.4
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 9.8e-17 93.2 373 31.6
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 9.8e-17 93.2 163 36.2
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-16 92.4 337 31.8
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-16 92.4 337 31.8
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.2e-16 92.0 375 29.1
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 2.2e-16 92.0 552 25.9
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.2e-16 92.0 864 26.6
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.2e-16 92.0 599 24.9
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.9e-16 91.7 157 39.5
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.9e-16 91.7 157 39.5
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 3.7e-16 91.3 609 25.3
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 4.9e-16 90.9 377 31.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 4.9e-16 90.9 392 30.9
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 6.4e-16 90.5 477 28.9
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 8.3e-16 90.1 288 33.7
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.4e-15 89.4 323 31.6
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.4e-15 89.4 323 31.6
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.9e-15 89.0 348 32.8
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.2e-15 88.2 492 25.8
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 7.0e-15 87.0 241 32.4
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 1.2e-14 86.3 509 26.1
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.6e-14 85.9 699 26.2
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.5e-14 84.7 330 33.0
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 4.6e-14 84.3 587 24.0
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 7.8e-14 83.6 226 34.1
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.7e-13 82.4 553 26.0
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.7e-13 82.4 361 31.6
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.7e-13 82.4 362 30.9
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 5.0e-13 80.9 331 27.5
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 5.0e-13 80.9 818 26.7
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.1e-12 79.7 720 25.6
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 4.3e-12 77.8 446 28.5
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 4.3e-12 77.8 656 24.5
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 7.3e-12 77.0 585 24.8
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 7.3e-12 77.0 972 25.2
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.2e-11 76.3 77 55.8
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.1e-11 73.6 65 55.4
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 8.1e-11 73.6 300 29.7
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.8e-10 72.4 599 23.9
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 5.2e-10 70.9 583 26.2
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 6.8e-10 70.5 331 32.0
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 3.4e-09 68.2 363 25.1
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 1.3e-08 66.2 207 32.9
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 1.7e-08 65.9 39 76.9
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 3.7e-08 64.7 858 26.0
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 8.3e-08 63.5 347 31.4
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.1e-07 63.2 92 48.9
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.1e-07 63.2 43 69.8
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.4e-07 62.8 878 24.6
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 1.4e-07 62.8 38 73.7
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 1.4e-07 62.8 38 73.7
PSO541G1500 Papaver somniferum HOM05D018639 ORTHO05D037265 1.4e-07 62.8 295 27.8
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.4e-07 62.0 347 29.7
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 3.2e-07 61.6 177 30.5
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 5.4e-07 60.8 35 77.1
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 5.4e-07 60.8 294 28.9
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 9.2e-07 60.1 222 32.4
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 3.5e-06 58.2 116 36.2
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 3.5e-06 58.2 81 44.4
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 6.0e-06 57.4 48 60.4
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 7.8e-06 57.0 174 31.6
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 7.8e-06 57.0 61 52.5


User provided reference genes

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