Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2738.8 1383 100.0
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2600.9 1385 93.4
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2600.5 1385 93.4
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2594.7 1384 93.4
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2592.4 1383 92.8
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2584.7 1383 92.2
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2581.6 1383 92.3
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2578.9 1383 92.2
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2577.7 1383 91.9
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2577.7 1383 91.9
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2560.4 1383 91.8
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2558.9 1398 90.9
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2554.2 1385 91.2
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2551.9 1383 90.7
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2551.5 1383 90.9
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2551.5 1384 91.3
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2549.2 1384 91.4
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2546.5 1384 90.9
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2546.2 1399 90.3
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2546.2 1386 91.1
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2545.0 1388 91.1
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2543.5 1385 91.5
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2543.1 1383 91.2
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2541.9 1388 91.1
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2540.8 1383 90.4
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2540.4 1383 91.2
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2540.4 1383 90.7
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2536.9 1382 91.0
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2535.8 1386 90.3
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2534.6 1383 90.2
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1383 90.2
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2533.8 1383 90.3
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2533.8 1383 90.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2531.9 1383 90.2
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2528.8 1384 90.4
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2527.3 1384 90.5
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2526.1 1383 89.8
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2523.0 1383 90.6
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2519.6 1383 89.4
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2519.2 1383 89.2
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2517.7 1384 90.1
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2517.7 1383 89.8
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2515.0 1383 89.8
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2514.2 1335 93.6
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2513.4 1382 89.7
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2510.7 1383 89.7
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2509.6 1384 89.5
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2508.4 1383 89.4
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2507.6 1383 89.4
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2507.6 1384 89.2
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2506.5 1384 89.9
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2506.1 1384 89.2
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2505.3 1384 89.1
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2504.2 1384 89.5
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2503.4 1384 89.4
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1383 89.2
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2500.3 1386 88.7
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2497.6 1384 88.7
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2497.2 1384 89.2
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2496.5 1384 88.7
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2494.5 1384 89.2
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2492.2 1383 88.4
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2489.1 1394 88.3
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2488.8 1383 89.7
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2488.0 1383 88.5
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1383 89.7
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2486.1 1383 88.5
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1383 88.3
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2483.4 1383 88.3
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2482.6 1383 88.9
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2473.4 1410 86.8
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2472.2 1385 88.0
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2472.2 1446 84.9
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2464.1 1384 88.6
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2461.4 1386 87.4
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2447.9 1384 86.6
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2447.5 1384 86.6
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1355 88.4
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1384 87.0
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2439.1 1383 88.6
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2432.9 1384 87.1
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2429.1 1384 86.6
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2427.9 1384 86.7
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2425.6 1383 86.7
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2422.1 1384 86.4
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1384 86.0
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1384 86.1
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2413.3 1384 86.3
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2412.1 1385 86.4
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2412.1 1385 86.4
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2411.7 1384 86.2
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2410.2 1384 86.1
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2360.9 1384 84.7
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2360.9 1386 84.5
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2348.2 1409 83.7
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2348.2 1385 84.3
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2340.8 1259 92.1
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2336.6 1400 82.6
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2307.7 1258 90.7
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2286.1 1381 81.0
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2267.7 1262 89.1
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2226.4 1347 83.4
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2203.7 1333 80.9
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2185.2 1342 79.0
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2179.1 1353 78.0
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2169.0 1345 78.5
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2169.0 1345 78.5
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2162.9 1342 77.6
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2028.1 1121 89.7
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 2006.1 1109 89.6
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2001.1 1381 75.7
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1951.4 1401 74.2
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1888.6 1332 69.4
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1860.1 1334 68.2
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1748.4 1383 68.0
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1705.3 913 92.1
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1645.6 898 90.9
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1508.0 808 92.1
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1503.4 809 91.6
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1140.9 690 82.9
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1121.3 675 81.9
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 7.4e-307 1057.7 669 79.4
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.1e-294 1017.3 571 86.2
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 2.0e-264 916.8 1199 43.9
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 8.6e-263 911.4 592 78.5
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 3.4e-243 846.3 471 88.7
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 9.2e-241 838.2 472 87.7
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 2.3e-239 833.6 471 87.3
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 6.9e-220 768.8 473 82.2
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.2e-203 714.9 398 86.9
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 7.4e-174 615.9 1375 31.9
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 3.8e-162 577.0 1470 29.9
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 2.4e-111 408.3 1269 28.8
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.0e-90 339.7 175 96.0
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 3.3e-65 255.0 147 85.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.5e-60 239.6 123 94.3
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.4e-47 196.4 107 90.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.3e-40 173.3 174 56.3
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 9.2e-31 140.6 139 51.1
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 2.8e-27 129.0 99 66.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 6.8e-26 124.4 91 69.2
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 4.7e-19 101.7 60 81.7


User provided reference genes

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