Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016306 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 1.4e-71 273.1 163 100.0
CSS0021299 Camellia sinensis var. sinensis HOM05D006752 ORTHO05D008597 8.2e-64 247.3 124 98.4
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 1.2e-46 190.3 126 74.6
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 2.2e-37 159.5 114 67.5
Rhsim01G0090500 Rhododendron simsii HOM05D006752 ORTHO05D008597 8.5e-37 157.5 130 63.8
GSVIVG01015454001 Vitis vinifera HOM05D006752 ORTHO05D008597 1.6e-35 153.3 112 65.2
Atru.chr7.1279 Acer truncatum HOM05D006752 ORTHO05D008597 8.0e-35 151.0 114 61.4
Prupe.7G235200 Prunus persica HOM05D006752 ORTHO05D008597 6.8e-34 147.9 116 64.7
Ca_30697_v3 Cicer arietinum L. HOM05D006752 ORTHO05D008597 1.2e-33 147.1 122 59.8
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 3.4e-33 145.6 125 58.4
Haze_25667 Corylus avellana HOM05D006752 ORTHO05D008597 1.7e-32 143.3 95 71.6
Nitab4.5_0005520g0050 Nicotiana tabacum HOM05D006752 ORTHO05D008597 1.7e-32 143.3 124 59.7
Thecc.09G116900 Theobroma cacao HOM05D006752 ORTHO05D008597 1.7e-32 143.3 124 59.7
RcHm_v2.0_Chr2g0089761 Rosa chinensis HOM05D006752 ORTHO05D008597 2.2e-32 142.9 114 59.6
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.8e-32 142.5 101 72.3
Cc06_g09220 Coffea canephora HOM05D006752 ORTHO05D008597 8.3e-32 141.0 124 60.5
DCAR_010437 Daucus carota HOM05D006752 ORTHO05D008597 1.4e-31 140.2 124 57.3
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 3.1e-31 139.0 125 58.4
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.1e-31 138.7 114 57.9
Oeu018257.1 Olea europaea HOM05D006752 ORTHO05D008597 5.4e-31 138.3 117 62.4
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 9.1e-31 137.5 114 57.9
HanXRQChr10g0317451 Helianthus annuus HOM05D006752 ORTHO05D008597 9.1e-31 137.5 125 57.6
Nitab4.5_0001164g0060 Nicotiana tabacum HOM05D006752 ORTHO05D008597 9.1e-31 137.5 124 61.3
QL02p086379 Quercus lobata HOM05D006752 ORTHO05D008597 9.1e-31 137.5 115 57.4
Cpa.g.sc23.163 Carica papaya HOM05D006752 ORTHO05D008597 2.0e-30 136.3 116 57.8
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 2.7e-30 136.0 114 56.1
MD02G1061400 Malus domestica HOM05D006752 ORTHO05D008597 2.7e-30 136.0 112 58.9
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 4.5e-30 135.2 116 55.2
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 1.0e-29 134.0 112 56.2
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.3e-29 133.7 113 58.4
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 1.3e-29 133.7 124 58.9
Gorai.010G068100 Gossypium raimondii HOM05D006752 ORTHO05D008597 1.7e-29 133.3 118 58.5
TPR.G10362 Trifolium pratense HOM05D006752 ORTHO05D008597 1.7e-29 133.3 109 58.7
MBI01_g13570_MAGBIO Magnolia biondii HOM05D006752 ORTHO05D008597 2.3e-29 132.9 121 57.0
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 3.8e-29 132.1 126 57.9
Sc08g0007040 Simmondsia chinensis HOM05D006752 ORTHO05D008597 5.0e-29 131.7 124 57.3
Duzib168G0331 Durio zibethinus HOM05D006752 ORTHO05D008597 1.5e-28 130.2 114 58.8
Gohir.D06G058000 Gossypium hirsutum HOM05D006752 ORTHO05D008597 1.5e-28 130.2 118 57.6
Medtr2g050180 Medicago truncatula HOM05D006752 ORTHO05D008597 1.5e-28 130.2 111 58.6
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 2.5e-28 129.4 91 75.8
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 2.5e-28 129.4 119 56.3
Gohir.A06G059800 Gossypium hirsutum HOM05D006752 ORTHO05D008597 4.2e-28 128.6 118 57.6
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 7.2e-28 127.9 118 56.8
AUR62033416 Chenopodium quinoa HOM05D006752 ORTHO05D008597 7.2e-28 127.9 118 55.9
vmacro20678 Vaccinium macrocarpon HOM05D006752 ORTHO05D008597 7.2e-28 127.9 113 61.9
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 1.6e-27 126.7 121 53.7
SalBow6G5676 Salvia bowleyana HOM05D006752 ORTHO05D008597 1.6e-27 126.7 124 54.8
arahy.Tifrunner.gnm1.ann1.CJP391 Arachis hypogaea HOM05D006752 ORTHO05D008597 2.8e-27 125.9 111 54.1
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 2.8e-27 125.9 116 54.3
arahy.Tifrunner.gnm1.ann1.TG1F9L Arachis hypogaea HOM05D006752 ORTHO05D008597 3.6e-27 125.6 111 54.1
Sed0015690 Sechium edule HOM05D006752 ORTHO05D008597 6.1e-27 124.8 112 55.4
CAN.G377.33 Capsicum annuum HOM05D006752 ORTHO05D008597 1.4e-26 123.6 127 55.1
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 1.4e-26 123.6 116 55.2
Hund09171 Selenicereus undatus HOM05D006752 ORTHO05D008597 1.8e-26 123.2 88 65.9
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 3.0e-26 122.5 88 67.0
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 4.0e-26 122.1 126 54.8
Ah.14g081300 Amaranthus hybridus HOM05D006752 ORTHO05D008597 5.2e-26 121.7 124 54.0
PGSC0003DMG400020684 Solanum tuberosum HOM05D006752 ORTHO05D008597 6.8e-26 121.3 126 53.2
Solyc12g006710.3 Solanum lycopersicum HOM05D006752 ORTHO05D008597 8.9e-26 120.9 126 54.8
ClCG06G010500 Citrullus lanatus HOM05D006752 ORTHO05D008597 1.2e-25 120.6 112 52.7
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 1.2e-25 120.6 99 65.7
Psat1g025400 Pisum sativum HOM05D006752 ORTHO05D008597 1.2e-25 120.6 112 53.6
EL10Ac8g18558 Beta vulgaris HOM05D006752 ORTHO05D008597 2.6e-25 119.4 114 57.0
CANSAT56G2958 Cannabis sativa HOM05D006752 ORTHO05D008597 9.8e-25 117.5 115 53.0
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 2.2e-24 116.3 108 55.6
Sopen12g002660 Solanum pennellii HOM05D006752 ORTHO05D008597 2.8e-24 115.9 126 53.2
Zm00001eb336920 Zea mays HOM05D006752 ORTHO05D008597 2.8e-24 115.9 132 51.5
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 3.7e-24 115.5 119 52.1
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.1e-23 114.0 88 60.2
MSTRG.19609 Avicennia marina HOM05D006752 ORTHO05D008597 1.8e-23 113.2 114 57.0
Potri.018G073100 Populus trichocarpa HOM05D006752 ORTHO05D008597 1.8e-23 113.2 113 49.6
Os01g0178100 Oryza sativa ssp. japonica HOM05D006752 ORTHO05D008597 2.4e-23 112.8 125 49.6
Peaxi162Scf00984g00260 Petunia axillaris HOM05D006752 ORTHO05D008597 9.2e-23 110.9 126 52.4
HPP92_008698 Vanilla planifolia HOM05D006752 ORTHO05D008597 2.7e-22 109.4 115 50.4
MELO3C025306.2 Cucumis melo HOM05D006752 ORTHO05D008597 3.5e-22 109.0 112 49.1
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.3e-21 107.1 114 50.0
CsaV3_1G030960 Cucumis sativus L. HOM05D006752 ORTHO05D008597 5.0e-21 105.1 112 50.9
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 5.0e-21 105.1 123 48.8
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 8.6e-21 104.4 107 53.3
Migut.J01179 Erythranthe guttata HOM05D006752 ORTHO05D008597 1.1e-20 104.0 127 50.4
Sabra18G0063600 Salix brachista HOM05D006752 ORTHO05D008597 7.3e-20 101.3 113 45.1
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 6.1e-19 98.2 122 48.4
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 8.9e-18 94.4 120 47.5
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 2.6e-17 92.8 122 45.1
SEGI_05783 Sequoiadendron giganteum HOM05D006752 ORTHO05D008597 3.4e-17 92.4 134 44.0
Carub.0006s1832 Capsella rubella HOM05D006752 ORTHO05D008597 1.7e-16 90.1 124 44.4
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 6.4e-16 88.2 121 43.8
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 1.1e-15 87.4 117 44.4
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 1.1e-15 87.4 117 44.4
A10p19780 Brassica napus HOM05D006752 ORTHO05D008597 1.4e-15 87.0 119 43.7
BraA10t44054Z Brassica rapa HOM05D006752 ORTHO05D008597 1.4e-15 87.0 119 43.7
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 2.4e-15 86.3 124 42.7
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 4.1e-15 85.5 121 44.6
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 9.2e-15 84.3 117 43.6
Lsat_1_v5_gn_5_99240 Lactuca sativa HOM05D006752 ORTHO05D008597 3.9e-13 79.0 116 41.4
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 1.5e-12 77.0 123 40.7
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 2.5e-12 76.3 119 41.2
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 6.2e-11 71.6 141 35.5
TWI32G0100 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.4e-10 70.5 105 38.1
MD02G1040500 Malus domestica HOM05D006752 ORTHO05D008597 6.8e-10 68.2 81 46.9
CDE02G1475 Ceratophyllum demersum HOM05D006752 ORTHO05D008597 8.3e-08 61.2 55 56.4
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 4.1e-07 58.9 147 36.7
Pp3c9_1660 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.1e-06 56.6 115 37.4
Pp3c9_1669 Physcomitrium patens HOM05D006752 ORTHO05D008597 2.1e-06 56.6 115 37.4


User provided reference genes

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