Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 5.4e-66 254.2 132 100.0
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 5.4e-66 254.2 132 100.0
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 3.2e-58 228.4 132 89.4
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 3.2e-58 228.4 132 88.6
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 9.3e-58 226.9 132 88.6
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.0e-56 223.4 132 87.1
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.0e-56 223.4 132 87.1
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 1.8e-56 222.6 132 86.4
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 5.1e-56 221.1 132 86.4
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 6.7e-56 220.7 132 85.6
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 8.7e-56 220.3 132 84.8
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 1.1e-55 219.9 132 85.6
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 1.5e-55 219.5 132 86.4
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.5e-55 219.5 132 85.6
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.9e-55 219.2 132 84.8
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 2.5e-55 218.8 132 85.6
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 3.3e-55 218.4 132 84.8
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 3.3e-55 218.4 133 85.7
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 3.3e-55 218.4 132 86.4
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 4.3e-55 218.0 132 84.1
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 4.3e-55 218.0 132 84.8
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 5.6e-55 217.6 132 84.8
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 7.4e-55 217.2 132 84.1
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 9.6e-55 216.9 132 84.1
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 9.6e-55 216.9 132 84.1
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 1.6e-54 216.1 133 83.5
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.6e-54 216.1 132 83.3
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 2.1e-54 215.7 133 85.7
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 2.1e-54 215.7 133 85.7
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 2.1e-54 215.7 131 83.2
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 2.1e-54 215.7 131 83.2
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 3.7e-54 214.9 132 82.6
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 4.8e-54 214.5 132 84.1
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 4.8e-54 214.5 132 83.3
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 6.2e-54 214.2 132 83.3
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 8.1e-54 213.8 132 84.1
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 1.1e-53 213.4 132 82.6
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.1e-53 213.4 133 84.2
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 1.1e-53 213.4 131 84.7
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 82.4
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 1.8e-53 212.6 132 83.3
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 2.4e-53 212.2 132 81.8
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.4e-53 212.2 131 84.0
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.4e-53 212.2 132 84.1
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 3.1e-53 211.8 132 82.6
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 3.1e-53 211.8 133 84.2
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.1e-53 211.8 133 84.2
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.1e-53 211.8 133 84.2
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.1e-53 211.8 132 83.3
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 4.0e-53 211.5 132 82.6
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 4.0e-53 211.5 132 83.3
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 4.0e-53 211.5 132 83.3
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 4.0e-53 211.5 132 82.6
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 6.9e-53 210.7 132 80.3
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 9.0e-53 210.3 132 81.1
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 9.0e-53 210.3 132 81.1
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.2e-52 209.9 131 84.0
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 1.2e-52 209.9 132 81.1
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.5e-52 209.5 134 84.3
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.0e-52 209.1 133 83.5
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.6e-52 208.8 132 83.3
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.6e-52 208.8 133 82.7
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 4.5e-52 208.0 132 81.1
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 4.5e-52 208.0 132 82.6
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 4.5e-52 208.0 134 81.3
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 7.6e-52 207.2 131 82.4
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 7.6e-52 207.2 131 82.4
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 9.9e-52 206.8 131 80.9
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 9.9e-52 206.8 133 82.7
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.3e-51 206.5 132 80.3
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 1.3e-51 206.5 132 79.5
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.3e-51 206.5 132 78.0
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.3e-51 206.5 133 82.0
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 1.7e-51 206.1 132 81.1
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 1.7e-51 206.1 132 81.1
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 1.7e-51 206.1 132 81.1
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 1.7e-51 206.1 132 81.1
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 1.7e-51 206.1 133 82.0
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 2.2e-51 205.7 132 79.5
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 2.2e-51 205.7 132 78.0
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 81.7
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 2.9e-51 205.3 133 80.5
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 2.9e-51 205.3 131 81.7
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 4.9e-51 204.5 131 80.9
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 6.4e-51 204.1 132 82.6
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 8.4e-51 203.8 132 79.5
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 8.4e-51 203.8 133 80.5
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 8.4e-51 203.8 132 78.0
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 1.1e-50 203.4 133 81.2
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 1.9e-50 202.6 133 79.7
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 1.9e-50 202.6 133 81.2
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 3.2e-50 201.8 133 80.5
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 3.2e-50 201.8 133 80.5
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 3.2e-50 201.8 133 80.5
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 3.2e-50 201.8 133 80.5
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 3.2e-50 201.8 131 77.9
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 4.2e-50 201.4 132 81.1
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 4.2e-50 201.4 133 79.7
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 4.2e-50 201.4 132 81.1
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 7.1e-50 200.7 131 79.4
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 7.1e-50 200.7 133 80.5
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 1.2e-49 199.9 133 78.9
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 1.2e-49 199.9 132 80.3
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 1.6e-49 199.5 132 79.5
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.6e-49 199.5 133 79.7
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 2.1e-49 199.1 132 78.0
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 2.1e-49 199.1 132 79.5
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.5e-49 198.4 129 79.8
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 7.9e-49 197.2 132 78.0
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 7.9e-49 197.2 133 78.9
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 1.3e-48 196.4 136 77.9
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.8e-48 196.1 131 75.6
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 2.3e-48 195.7 125 79.2
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 3.0e-48 195.3 131 75.6
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 3.9e-48 194.9 131 77.9
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 78.8
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 1.1e-47 193.4 134 78.4
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 1.9e-47 192.6 134 77.6
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.9e-47 192.6 131 77.1
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 4.3e-47 191.4 134 76.9
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.6e-46 189.5 177 61.6
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 4.0e-45 184.9 103 89.3
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 6.9e-45 184.1 132 73.5
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 5.8e-44 181.0 164 63.4
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 5.8e-44 181.0 130 73.8
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 1.3e-43 179.9 130 73.8
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 1.3e-43 179.9 138 70.3
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 3.0e-40 168.7 134 68.7
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 5.1e-40 167.9 125 69.6
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 3.3e-39 165.2 133 65.4
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.6e-38 162.9 133 65.4
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 6.3e-38 161.0 131 66.4
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 8.2e-38 160.6 129 66.7
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.4e-37 159.8 122 70.5
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 3.4e-36 155.2 130 70.8
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 4.5e-36 154.8 130 69.2
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 7.4e-31 137.5 134 59.0
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 7.4e-31 137.5 88 77.3
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 1.2e-25 120.2 127 52.0
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 5.1e-24 114.8 78 75.6
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 5.9e-20 101.3 105 53.3
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 7.7e-20 100.9 69 75.4
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 5.9e-12 74.7 48 77.1
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 9.4e-10 67.4 78 44.9
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 2.7e-09 65.9 92 41.3


User provided reference genes

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