Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.9e-71 272.3 132 100.0
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.2e-70 267.3 132 97.7
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.0e-69 264.6 132 97.0
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.0e-61 238.0 132 90.2
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.1e-57 225.7 111 97.3
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.6e-54 216.1 111 91.9
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.7e-54 214.9 111 91.0
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 6.2e-54 214.2 111 91.0
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.2e-52 209.9 111 88.3
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 3.4e-52 208.4 110 90.0
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.4e-52 208.4 111 86.5
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 4.5e-52 208.0 111 88.3
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 4.5e-52 208.0 111 85.6
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 5.8e-52 207.6 113 85.0
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 7.6e-52 207.2 111 87.4
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.3e-51 206.5 111 86.5
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.3e-51 206.5 111 85.6
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.9e-51 205.3 111 87.4
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.8e-51 204.9 111 84.7
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 4.9e-51 204.5 111 84.7
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 6.4e-51 204.1 111 84.7
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 8.4e-51 203.8 111 84.7
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 8.4e-51 203.8 111 86.5
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 8.4e-51 203.8 111 83.8
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.1e-50 203.4 111 84.7
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-50 203.4 111 84.7
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-50 203.4 111 84.7
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.1e-50 203.4 111 83.8
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.1e-50 203.4 111 83.8
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.1e-50 203.4 111 83.8
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.1e-50 203.4 111 83.8
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.4e-50 203.0 119 84.0
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 1.9e-50 202.6 111 83.8
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.9e-50 202.6 111 83.8
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 2.4e-50 202.2 111 82.0
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 2.4e-50 202.2 111 82.9
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.4e-50 202.2 111 82.0
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.2e-50 201.8 113 81.4
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.2e-50 201.4 107 85.0
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 4.2e-50 201.4 110 83.6
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.2e-50 201.4 111 84.7
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 4.2e-50 201.4 111 84.7
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 4.2e-50 201.4 111 84.7
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.2e-50 201.4 111 83.8
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.2e-50 201.4 111 83.8
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 4.2e-50 201.4 111 82.9
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 7.1e-50 200.7 111 84.7
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 9.3e-50 200.3 111 84.7
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 9.3e-50 200.3 111 81.1
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.2e-49 199.9 111 80.2
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-49 199.9 111 82.9
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.6e-49 199.5 111 82.9
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.6e-49 199.5 111 81.1
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.6e-49 199.5 111 82.9
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.1e-49 199.1 111 80.2
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 2.1e-49 199.1 110 83.6
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 2.1e-49 199.1 110 83.6
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 2.7e-49 198.7 111 82.0
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.5e-49 198.4 109 81.7
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 3.5e-49 198.4 111 81.1
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 4.6e-49 198.0 111 83.8
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 4.6e-49 198.0 111 79.3
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.6e-49 198.0 111 79.3
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 4.6e-49 198.0 111 83.8
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 6.0e-49 197.6 111 81.1
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 6.0e-49 197.6 111 82.0
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.0e-48 196.8 111 80.2
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.0e-48 196.8 111 79.3
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.3e-48 196.4 111 82.0
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 3.0e-48 195.3 111 78.4
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 8.7e-48 193.7 111 80.2
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.1e-47 193.4 110 81.8
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.5e-47 192.2 111 82.0
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 2.5e-47 192.2 111 82.0
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 4.3e-47 191.4 111 79.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 4.3e-47 191.4 111 81.1
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 5.6e-47 191.0 112 77.7
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 7.4e-47 190.7 112 76.8
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 7.4e-47 190.7 112 76.8
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 7.4e-47 190.7 112 76.8
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.3e-46 189.9 110 78.2
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 1.3e-46 189.9 110 79.1
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.6e-46 189.5 112 75.9
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 1.6e-46 189.5 112 75.9
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.6e-46 189.5 110 80.0
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.6e-46 189.5 111 75.7
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 3.7e-46 188.3 116 81.0
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 3.7e-46 188.3 111 81.1
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 8.2e-46 187.2 111 79.3
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.1e-45 186.8 111 76.6
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.4e-45 186.4 112 75.0
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.4e-45 186.4 112 74.1
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.8e-45 186.0 112 75.0
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 5.3e-45 184.5 112 75.0
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 6.9e-45 184.1 111 73.9
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 9.0e-45 183.7 110 73.6
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 9.0e-45 183.7 112 73.2
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 9.0e-45 183.7 112 74.1
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.5e-44 183.0 110 77.3
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.0e-44 182.6 112 74.1
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 2.6e-44 182.2 112 74.1
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.4e-44 181.8 111 73.9
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 3.4e-44 181.8 111 79.3
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 4.5e-44 181.4 112 72.3
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 7.6e-44 180.6 112 73.2
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 7.6e-44 180.6 112 73.2
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 6.5e-43 177.6 110 69.1
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 8.4e-43 177.2 110 75.5
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.5e-42 175.6 110 68.2
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 3.2e-42 175.3 111 72.1
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.2e-42 175.3 111 75.7
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 4.2e-42 174.9 110 72.7
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 1.6e-41 172.9 111 76.6
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 3.5e-41 171.8 110 74.5
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 4.6e-41 171.4 110 71.8
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 5.7e-39 164.5 110 66.4
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 9.7e-39 163.7 111 64.9
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.8e-37 159.5 83 85.5
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.2e-36 156.8 96 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 7.6e-36 154.1 110 56.4
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.3e-35 153.3 83 78.3
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.9e-35 152.1 81 82.7
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.9e-35 152.1 85 80.0
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 3.2e-34 148.7 111 60.4
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 5.5e-34 147.9 110 60.0
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.5e-31 139.8 102 66.7
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.7e-31 137.1 102 65.7
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 1.2e-28 130.2 110 53.6
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.9e-28 127.9 89 71.9
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 1.0e-27 127.1 96 60.4
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.2e-25 120.2 70 84.3
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 8.8e-16 87.4 109 37.6
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 2.0e-15 86.3 95 37.9
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.1e-13 80.5 109 36.7
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 7.7e-12 74.3 109 36.7
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 6.5e-11 71.2 35 80.0
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 8.0e-09 64.3 78 39.7
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.2e-08 61.6 32 78.1
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-07 60.5 59 49.2
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 8.2e-06 54.3 34 58.8


User provided reference genes

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