Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 1.0e-179 633.3 308 100.0
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 6.5e-179 630.6 308 99.7
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 1.2e-153 546.6 308 82.8
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 2.2e-150 535.8 308 82.1
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.8e-149 532.7 309 81.6
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 2.7e-148 528.9 309 79.3
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 2.3e-147 525.8 297 80.8
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 3.8e-147 525.0 308 79.2
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 5.0e-147 524.6 308 80.2
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 1.1e-146 523.5 308 80.8
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 1.1e-146 523.5 383 69.5
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.5e-146 522.3 308 78.2
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 9.5e-146 520.4 308 78.2
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 9.5e-146 520.4 308 78.2
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 2.1e-145 519.2 313 78.0
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.8e-144 516.2 303 77.9
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.8e-144 516.2 381 69.0
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 2.3e-144 515.8 306 79.7
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 3.0e-144 515.4 303 77.6
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 3.0e-144 515.4 308 77.9
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 5.2e-144 514.6 308 76.9
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 6.8e-144 514.2 311 77.8
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 6.8e-144 514.2 305 79.0
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 1.2e-143 513.5 307 78.2
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 1.2e-143 513.5 311 77.5
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 2.0e-143 512.7 303 77.2
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 2.0e-143 512.7 305 77.4
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 2.6e-143 512.3 308 77.3
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.6e-143 512.3 298 79.9
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 3.4e-143 511.9 308 77.3
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 5.8e-143 511.1 311 77.5
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 7.5e-143 510.8 308 77.9
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 7.5e-143 510.8 308 76.9
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 9.8e-143 510.4 305 78.0
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 2.2e-142 509.2 307 76.2
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 2.2e-142 509.2 308 75.3
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 3.7e-142 508.4 298 77.9
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 3.7e-142 508.4 308 78.2
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 8.3e-142 507.3 301 77.4
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 8.3e-142 507.3 309 77.7
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 8.3e-142 507.3 308 75.6
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.1e-141 506.9 305 77.4
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.8e-141 506.1 308 75.3
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 4.1e-141 505.0 308 77.3
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.1e-141 505.0 308 75.3
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 5.4e-141 504.6 308 77.6
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 7.0e-141 504.2 304 77.3
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.6e-140 503.1 308 76.3
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 2.0e-140 502.7 302 77.2
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 2.0e-140 502.7 308 74.7
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 2.7e-140 502.3 305 76.4
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 3.5e-140 501.9 308 75.3
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 4.6e-140 501.5 305 76.7
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 4.6e-140 501.5 308 76.3
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 4.6e-140 501.5 308 76.0
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 7.8e-140 500.7 305 76.7
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.3e-139 500.0 308 76.0
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 1.7e-139 499.6 308 75.6
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 3.0e-139 498.8 308 75.6
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 3.9e-139 498.4 301 75.7
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 5.0e-139 498.0 305 75.4
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 5.0e-139 498.0 306 75.8
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 1.1e-138 496.9 310 74.5
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.5e-138 496.5 301 75.4
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 4.3e-138 495.0 309 74.1
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 9.5e-138 493.8 305 75.1
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.6e-137 493.0 308 76.6
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.8e-137 492.3 307 75.9
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 3.6e-137 491.9 303 75.2
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 1.4e-136 490.0 308 72.4
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 1.4e-136 490.0 308 74.0
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.2e-135 486.9 308 72.7
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.5e-135 486.5 307 72.6
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 1.5e-135 486.5 308 74.0
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 2.0e-135 486.1 305 72.8
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 5.8e-135 484.6 306 71.6
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 6.4e-134 481.1 306 71.2
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 1.1e-133 480.3 306 70.9
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 1.1e-133 480.3 305 74.4
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.1e-133 480.3 308 72.4
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 1.4e-133 479.9 304 70.7
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.9e-133 479.6 306 71.2
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 4.1e-133 478.4 305 70.8
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 4.1e-133 478.4 304 70.7
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 7.0e-133 477.6 305 70.8
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 9.2e-133 477.2 311 71.1
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 2.7e-132 475.7 305 70.5
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 4.6e-132 474.9 305 69.8
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 4.6e-132 474.9 307 71.0
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 7.8e-132 474.2 306 69.9
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.7e-131 473.0 307 72.6
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 8.6e-131 470.7 304 69.7
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.5e-130 469.9 304 70.1
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 1.5e-130 469.9 307 72.0
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 2.8e-129 465.7 332 66.9
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 6.2e-129 464.5 344 65.7
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 5.8e-127 458.0 317 69.7
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 2.2e-126 456.1 311 67.2
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 1.1e-125 453.8 306 66.7
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.1e-120 437.2 308 67.2
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 1.1e-120 437.2 300 65.3
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 1.3e-118 430.3 272 74.3
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 1.3e-118 430.3 308 65.6
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 3.8e-118 428.7 308 68.2
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.0e-115 420.6 256 76.2
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 2.0e-111 406.4 265 70.6
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 3.8e-110 402.1 260 71.9
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 4.6e-108 395.2 265 75.5
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.2e-102 376.3 238 71.4
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 9.6e-98 360.9 301 57.5
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 1.1e-96 357.5 302 54.3
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 9.9e-95 350.9 201 79.1
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 2.1e-92 343.2 216 72.2
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 6.7e-91 338.2 301 56.5
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 2.8e-89 332.8 291 53.6
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 1.1e-88 330.9 301 51.5
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.0e-87 326.6 177 84.7
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 2.9e-86 322.8 177 84.2
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 2.3e-83 313.2 207 65.7
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 3.6e-76 289.3 179 78.2
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.5e-69 266.5 237 51.9
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 9.4e-69 264.6 181 70.2
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.6e-63 246.5 143 76.2
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.1e-58 231.1 129 85.3
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 1.0e-54 218.0 187 56.7
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 2.9e-54 216.5 170 57.1
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 5.2e-51 205.7 130 73.1
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.5e-50 204.1 107 91.6
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 7.7e-47 191.8 127 70.1
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 6.8e-43 178.7 129 67.4
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 1.1e-40 171.4 105 76.2
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 4.2e-37 159.5 106 71.7
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.4e-35 154.5 109 68.8
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.0e-35 153.3 107 72.0
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 3.1e-32 143.3 108 65.7
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 4.7e-20 102.8 76 57.9
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 6.8e-19 99.0 52 78.8


User provided reference genes

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