Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 3995.3 2002 100.0
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2936.7 2040 74.1
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2839.3 2240 67.7
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 2762.3 2211 66.6
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 2721.0 2006 71.1
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2628.6 2048 66.6
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2611.6 2052 65.5
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 2600.5 2038 66.5
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 2550.0 2054 64.5
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 2524.6 2050 63.5
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 2521.9 2039 64.4
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 2459.1 2041 62.5
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 2456.4 2063 62.1
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 2447.2 2045 62.3
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 2441.8 2078 62.4
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2421.4 2041 60.8
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 2407.9 2042 61.6
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 2404.4 2040 60.9
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 2402.5 2042 61.6
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 2390.5 2037 60.5
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2390.5 2049 61.4
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 2389.8 2050 60.1
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 2385.9 2055 60.0
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 2380.1 2050 60.9
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 2379.4 2050 60.0
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 2367.4 2044 59.9
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 2365.9 2050 59.8
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 2358.6 2042 59.0
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 2353.6 2047 59.3
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 2351.2 2053 59.2
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 2349.3 2056 60.7
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 2345.1 2044 59.4
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 2341.2 2056 58.8
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 2339.3 2026 59.3
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2335.8 2049 59.0
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 2332.8 2053 59.3
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 2330.4 2037 59.4
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 2326.6 2050 58.7
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 2320.8 2031 60.1
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 2318.9 2014 59.1
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2316.2 1936 61.8
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 2293.8 2055 57.9
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 2292.7 2064 58.5
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 2287.7 2241 55.7
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 2282.3 2056 57.4
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 2269.2 2040 58.8
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 2241.1 2035 58.0
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 2231.4 2016 58.2
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 2230.7 2031 57.4
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 2227.2 1902 60.2
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 2223.7 2347 51.5
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 2212.6 2017 56.7
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 2198.7 2043 56.8
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2190.6 2044 56.6
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 2186.4 2015 56.5
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 2182.1 2036 56.3
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 2177.9 2033 55.8
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 2172.5 2024 55.6
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 2165.2 2005 57.3
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 2164.8 2043 56.0
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 2161.3 2014 56.3
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 2159.0 1884 59.5
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 2157.5 2030 55.3
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 2155.9 2028 55.2
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 2155.2 2040 55.0
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 2147.9 2065 54.5
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2144.8 2055 54.8
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 2139.8 2056 54.8
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 2131.3 2032 54.8
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 2129.8 2036 56.0
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2116.7 2043 55.0
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 2065.0 1677 64.3
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 2046.6 2078 53.5
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 2030.0 2042 54.6
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 2004.9 2007 53.7
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1953.3 1891 53.9
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 1884.0 2073 49.6
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1666.4 1189 69.8
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1660.2 1344 64.1
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1460.3 1348 56.5
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1398.6 1917 41.7
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 0.0e+00 1323.1 1076 62.7
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 0.0e+00 1286.9 1513 47.1
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1254.2 2157 37.0
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1228.4 2057 36.7
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1184.9 1148 54.8
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1146.3 2118 35.3
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1140.6 1075 56.7
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 1.0e-293 1014.6 2209 32.0
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.7e-280 970.7 783 62.6
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 4.1e-266 922.9 952 52.9
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.6e-254 883.2 1008 47.7
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.4e-253 881.3 975 50.1
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 5.2e-253 879.4 1172 44.6
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 3.9e-248 863.2 758 60.2
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 5.1e-240 836.3 980 47.3
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 2.8e-198 697.6 529 67.5
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 1.1e-197 695.7 660 57.3
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 9.7e-175 619.4 500 64.6
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 4.5e-172 610.5 536 57.6
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 1.5e-167 595.5 522 60.5
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 6.6e-155 553.5 326 86.2
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.9e-146 525.4 455 58.9
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 1.2e-140 506.1 658 45.1
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 1.7e-139 502.3 431 59.4
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 6.6e-139 500.4 435 58.4
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 5.1e-131 474.2 292 78.4
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 1.0e-115 423.3 927 32.9
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 5.3e-112 411.0 339 63.4
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 1.3e-97 363.2 216 82.4
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 7.1e-93 347.4 254 63.4
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 1.4e-88 333.2 343 54.5
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.5e-85 322.4 462 41.1
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 3.8e-70 271.9 234 59.0
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.5e-70 271.2 233 60.5
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 4.7e-60 238.4 197 61.4
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 5.2e-59 235.0 284 48.6
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 3.4e-58 232.3 197 60.4
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 3.2e-53 215.7 306 42.2
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 2.7e-52 212.6 516 29.8
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 8.0e-52 211.1 304 40.1
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.8e-44 186.0 164 53.0
FAN02G1996 Fragaria x ananassa HOM05D004963 ORTHO05D006638 6.1e-36 158.3 141 57.4
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 5.2e-35 155.2 330 33.3
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 5.4e-32 145.2 146 49.3
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 3.0e-30 139.4 291 33.7
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 5.0e-30 138.7 132 50.8
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.6e-29 135.2 93 71.0
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.2e-28 134.0 125 52.0
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 2.3e-27 129.8 222 36.0
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.0e-26 126.7 160 47.5
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 3.4e-26 125.9 96 66.7
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 5.8e-26 125.2 99 64.6
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 4.9e-25 122.1 291 30.9
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 1.2e-23 117.5 139 46.8
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 3.0e-22 112.8 145 48.3
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 1.9e-21 110.2 194 36.6
Psat7g053800 Pisum sativum HOM05D001135 ORTHO05D001005 2.5e-21 109.8 110 47.3
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 6.2e-20 105.1 96 51.0
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 2.3e-19 103.2 79 62.0
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 1.4e-16 94.0 136 38.2
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.1e-16 92.4 74 54.1
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.1e-16 92.4 74 54.1
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 9.2e-16 91.3 74 52.7
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 2.1e-15 90.1 136 37.5
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 3.5e-15 89.4 208 27.9
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 1.5e-13 84.0 89 42.7
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 5.6e-13 82.0 97 47.4
C02p22570 Brassica napus HOM05D015603 ORTHO05D017573 4.0e-11 75.9 117 39.3
BolC2t08411H Brassica oleracea HOM05D015603 ORTHO05D017573 4.0e-11 75.9 117 39.3
Actinidia30715 Actinidia chinensis HOM05D004963 ORTHO05D006638 5.2e-11 75.5 119 41.2
Psat0s4196g0080 Pisum sativum HOM05D004963 ORTHO05D006638 8.9e-11 74.7 52 61.5
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 2.0e-10 73.6 74 43.2
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 3.4e-10 72.8 92 46.7
Actinidia27518 Actinidia chinensis HOM05D001993 ORTHO05D030912 9.9e-10 71.2 46 76.1
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 1.1e-08 67.8 59 62.7
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 9.3e-08 64.7 56 55.4
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 1.2e-07 64.3 134 27.6
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 1.6e-07 63.9 55 49.1
Carub.0006s0908 Capsella rubella HOM05D004963 ORTHO05D021908 3.5e-07 62.8 192 30.7
Zm00001eb150600 Zea mays HOM05D004963 ORTHO05D006638 3.5e-07 62.8 64 43.8
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 7.8e-07 61.6 55 47.3
BcaC08g43232 Brassica carinata HOM05D004963 ORTHO05D039387 5.1e-06 58.9 56 50.0


User provided reference genes

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