Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016223 Camellia sinensis var. sinensis HOM05D007420 ORTHO05D009353 1.8e-34 148.7 74 100.0
Actinidia22015 Actinidia chinensis HOM05D007420 ORTHO05D009353 2.0e-25 118.6 68 83.8
Glyma.05G010400 Glycine max HOM05D007420 ORTHO05D009353 9.9e-25 116.3 68 77.9
Dinv36572 Davidia involucrata HOM05D007420 ORTHO05D009353 4.9e-24 114.0 68 82.4
Phvul.003G161000 Phaseolus vulgaris HOM05D007420 ORTHO05D009353 1.4e-23 112.5 68 75.0
Eucgr.C01109 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.4e-23 111.7 68 77.9
Eucgr.C01298 Eucalyptus grandis HOM05D007420 ORTHO05D009353 2.4e-23 111.7 68 77.9
arahy.Tifrunner.gnm1.ann1.QR7ILI Arachis hypogaea HOM05D007420 ORTHO05D009353 3.2e-23 111.3 65 78.5
CANSAT56G4260 Cannabis sativa HOM05D007420 ORTHO05D009353 3.2e-23 111.3 68 79.4
Lalb_Chr13g0302091 Lupinus albus HOM05D007420 ORTHO05D009353 3.2e-23 111.3 68 76.5
QL02p087339 Quercus lobata HOM05D007420 ORTHO05D009353 5.4e-23 110.5 68 77.9
Cfa003340 Carpinus fangiana HOM05D007420 ORTHO05D009353 7.1e-23 110.2 68 76.5
Eucgr.L02717 Eucalyptus grandis HOM05D007420 ORTHO05D009353 9.3e-23 109.8 68 76.5
arahy.Tifrunner.gnm1.ann1.XPL4AE Arachis hypogaea HOM05D007420 ORTHO05D009353 1.2e-22 109.4 65 76.9
CiPaw.03G239800 Carya illinoinensis HOM05D007420 ORTHO05D009353 1.2e-22 109.4 68 75.0
Haze_25622 Corylus avellana HOM05D007420 ORTHO05D009353 1.2e-22 109.4 68 76.5
vmacro20648 Vaccinium macrocarpon HOM05D007420 ORTHO05D009353 3.5e-22 107.8 71 74.6
Cc06_g08970 Coffea canephora HOM05D007420 ORTHO05D009353 4.6e-22 107.5 68 76.5
Hma1.2p1_0018F.1_g012820 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 6.0e-22 107.1 68 80.9
Manes.06G052500 Manihot esculenta HOM05D007420 ORTHO05D009353 6.0e-22 107.1 68 75.0
Oeu021594.1 Olea europaea HOM05D007420 ORTHO05D009353 6.0e-22 107.1 68 77.9
TPR.G9078 Trifolium pratense HOM05D007420 ORTHO05D009353 7.8e-22 106.7 67 77.6
Atru.chr7.1239 Acer truncatum HOM05D007420 ORTHO05D009353 1.7e-21 105.5 68 75.0
Ciclev10009973m.g Citrus clementina HOM05D007420 ORTHO05D009353 1.7e-21 105.5 68 76.5
Gohir.A06G058200 Gossypium hirsutum HOM05D007420 ORTHO05D009353 2.3e-21 105.1 68 73.5
Gohir.D06G056500 Gossypium hirsutum HOM05D007420 ORTHO05D009353 2.3e-21 105.1 68 73.5
Gorai.010G066200 Gossypium raimondii HOM05D007420 ORTHO05D009353 2.3e-21 105.1 68 73.5
Potri.011G024500 Populus trichocarpa HOM05D007420 ORTHO05D009353 3.0e-21 104.8 70 71.4
Thecc.09G120400 Theobroma cacao HOM05D007420 ORTHO05D009353 8.7e-21 103.2 68 70.6
Nn2g11931 Nelumbo nucifera HOM05D007420 ORTHO05D009353 1.1e-20 102.8 68 75.0
Prupe.7G237700 Prunus persica HOM05D007420 ORTHO05D009353 1.1e-20 102.8 70 71.4
SalBow6G6280 Salvia bowleyana HOM05D007420 ORTHO05D009353 9.6e-20 99.8 68 70.6
Sabra11G0015300 Salix brachista HOM05D007420 ORTHO05D009353 1.3e-19 99.4 72 68.1
TWI34G1269 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 1.3e-19 99.4 70 68.6
Lj4g0001906 Lotus japonicus HOM05D007420 ORTHO05D009353 1.6e-19 99.0 71 70.4
THA.LOC104809007 Tarenaya hassleriana HOM05D007420 ORTHO05D009353 2.1e-19 98.6 70 67.1
TWI32G1185 Tripterygium wilfordii HOM05D007420 ORTHO05D009353 2.1e-19 98.6 70 67.1
Nn8g39361 Nelumbo nucifera HOM05D007420 ORTHO05D009353 2.8e-19 98.2 68 70.6
Psat4g040560 Pisum sativum HOM05D007420 ORTHO05D009353 3.6e-19 97.8 67 70.1
PGR102G0502 Punica granatum HOM05D007420 ORTHO05D009353 3.6e-19 97.8 67 67.2
SalBow1G2150 Salvia bowleyana HOM05D007420 ORTHO05D009353 3.6e-19 97.8 65 73.8
CDE01G0426 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 4.8e-19 97.4 68 70.6
Sed0006703 Sechium edule HOM05D007420 ORTHO05D009353 1.1e-18 96.3 68 70.6
Thhalv10019233m.g Eutrema salsugineum HOM05D007420 ORTHO05D009353 1.4e-18 95.9 68 70.6
Migut.L01525 Erythranthe guttata HOM05D007420 ORTHO05D009353 2.4e-18 95.1 65 73.8
CDE03G0079 Ceratophyllum demersum HOM05D007420 ORTHO05D009353 3.1e-18 94.7 68 69.1
Eucgr.C01288 Eucalyptus grandis HOM05D007420 ORTHO05D009353 3.1e-18 94.7 59 74.6
RcHm_v2.0_Chr2g0089401 Rosa chinensis HOM05D007420 ORTHO05D009353 3.1e-18 94.7 67 71.6
AL2G27600 Arabidopsis lyrata HOM05D007420 ORTHO05D009353 4.0e-18 94.4 68 69.1
Sp5g23780 Schrenkiella parvula HOM05D007420 ORTHO05D009353 4.0e-18 94.4 68 69.1
FvH4_1g03930 Fragaria vesca HOM05D007420 ORTHO05D009353 5.3e-18 94.0 67 74.6
Hma1.2p1_0018F.1_g012830 Hydrangea macrophylla HOM05D007420 ORTHO05D009353 6.9e-18 93.6 54 85.2
MD15G1177800 Malus domestica HOM05D007420 ORTHO05D009353 6.9e-18 93.6 66 71.2
BcaB03g15440 Brassica carinata HOM05D007420 ORTHO05D009353 9.0e-18 93.2 70 67.1
BcaC08g45947 Brassica carinata HOM05D007420 ORTHO05D009353 9.0e-18 93.2 70 67.1
Sc14g0000270 Simmondsia chinensis HOM05D007420 ORTHO05D009353 9.0e-18 93.2 73 68.5
C06p37440 Brassica napus HOM05D007420 ORTHO05D032647 1.2e-17 92.8 68 67.6
BolC6t38847H Brassica oleracea HOM05D007420 ORTHO05D009353 1.2e-17 92.8 68 67.6
MELO3C004528.2 Cucumis melo HOM05D007420 ORTHO05D009353 1.2e-17 92.8 69 71.0
unitig_85.g27256 Utricularia gibba HOM05D000953 ORTHO05D000231 1.2e-17 92.8 58 74.1
HanXRQChr03g0062071 Helianthus annuus HOM05D007420 ORTHO05D009353 1.5e-17 92.4 67 65.7
Hund09157 Selenicereus undatus HOM05D007420 ORTHO05D009353 1.5e-17 92.4 68 72.1
FAN23G1905 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.0e-17 92.0 67 71.6
FAN26G1322 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.0e-17 92.0 67 71.6
FAN28G1248 Fragaria x ananassa HOM05D007420 ORTHO05D009353 2.0e-17 92.0 67 71.6
BcaB03g15439 Brassica carinata HOM05D007420 ORTHO05D009353 2.6e-17 91.7 67 70.1
CsaV3_2G002630 Cucumis sativus L. HOM05D007420 ORTHO05D009353 2.6e-17 91.7 65 70.8
Aa31sc12G90 Aethionema arabicum HOM05D007420 ORTHO05D009353 3.4e-17 91.3 70 62.9
CARHR061490 Cardamine hirsuta HOM05D007420 ORTHO05D009353 4.5e-17 90.9 68 66.2
AUR62033448 Chenopodium quinoa HOM05D007420 ORTHO05D009353 4.5e-17 90.9 70 67.1
AT1G68680 Arabidopsis thaliana HOM05D007420 ORTHO05D009353 5.8e-17 90.5 68 66.2
ClCG11G002810 Citrullus lanatus HOM05D007420 ORTHO05D009353 5.8e-17 90.5 68 66.2
MD02G1037600 Malus domestica HOM05D007420 ORTHO05D009353 5.8e-17 90.5 66 69.7
FAN22G2307 Fragaria x ananassa HOM05D022909 ORTHO05D009353 7.6e-17 90.1 67 70.1
EL10Ac8g18588 Beta vulgaris HOM05D007420 ORTHO05D009353 1.3e-16 89.4 68 67.6
BraA07t30816Z Brassica rapa HOM05D007420 ORTHO05D009353 1.3e-16 89.4 69 65.2
CAN.G1424.4 Capsicum annuum HOM05D007420 ORTHO05D009353 1.3e-16 89.4 68 67.6
A07p31870 Brassica napus HOM05D007420 ORTHO05D009353 1.7e-16 89.0 67 65.7
DCAR_014860 Daucus carota HOM05D007420 ORTHO05D009353 1.7e-16 89.0 68 66.2
Nitab4.5_0000750g0050 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.7e-16 89.0 68 66.2
Nitab4.5_0001193g0010 Nicotiana tabacum HOM05D007420 ORTHO05D009353 1.7e-16 89.0 68 66.2
HPP92_024085 Vanilla planifolia HOM05D007420 ORTHO05D009353 2.9e-16 88.2 68 63.2
Carub.0002s1522 Capsella rubella HOM05D007420 ORTHO05D009353 4.9e-16 87.4 68 64.7
ECA240G1805 Erigeron canadensis HOM05D007420 ORTHO05D009353 6.4e-16 87.0 61 65.6
SHI28897 Sapria himalayana HOM05D007420 ORTHO05D009353 6.4e-16 87.0 67 62.7
FAN19G3121 Fragaria x ananassa HOM05D007420 ORTHO05D009353 1.1e-15 86.3 59 72.9
Peaxi162Scf00361g00611 Petunia axillaris HOM05D007420 ORTHO05D009353 1.1e-15 86.3 68 64.7
PSO170G5167 Papaver somniferum HOM05D007420 ORTHO05D009353 1.4e-15 85.9 52 78.8
GSVIVG01015481001 Vitis vinifera HOM05D007420 ORTHO05D009353 5.4e-15 84.0 68 61.8
Duzib150G1214 Durio zibethinus HOM05D007420 ORTHO05D009353 1.2e-14 82.8 49 77.6
SEGI_24866 Sequoiadendron giganteum HOM05D007420 ORTHO05D009353 3.5e-14 81.3 68 60.3
Solyc07g005430.3 Solanum lycopersicum HOM05D007420 ORTHO05D009353 7.9e-14 80.1 61 62.3
Sopen07g001360 Solanum pennellii HOM05D007420 ORTHO05D009353 7.9e-14 80.1 61 62.3
Zm00001eb283090 Zea mays HOM05D007420 ORTHO05D009353 3.0e-13 78.2 71 57.7
Pp3c11_6600 Physcomitrium patens HOM05D007420 ORTHO05D009353 1.5e-12 75.9 61 57.4
Os05g0176600 Oryza sativa ssp. japonica HOM05D007420 ORTHO05D009353 5.6e-12 73.9 43 83.7
AagrBONN_evm.TU.Sc2ySwM_362.2614 Anthoceros agrestis HOM05D007420 ORTHO05D009353 1.4e-10 69.3 53 62.3
PGSC0003DMG401011174 Solanum tuberosum HOM05D007420 ORTHO05D009353 2.4e-10 68.6 80 46.2
Mapoly0048s0106 Marchantia polymorpha HOM05D007420 ORTHO05D009353 9.0e-10 66.6 47 66.0
CBR_g3296 Chara braunii HOM05D007420 ORTHO05D009353 1.3e-08 62.8 64 50.0
MCO15G341 Micromonas commoda HOM05D007420 ORTHO05D009353 1.4e-07 59.3 45 62.2
Glyma.13G033951 Glycine max HOM05D007420 ORTHO05D009353 5.5e-07 57.4 35 71.4
Eucgr.C01292 Eucalyptus grandis HOM05D007420 ORTHO05D009353 4.6e-06 54.3 30 80.0
MBI01_g34140_MAGBIO Magnolia biondii HOM05D007420 ORTHO05D009353 4.6e-06 54.3 35 71.4


User provided reference genes

Program Settings