Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 6.1e-64 247.3 122 100.0
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 1.2e-62 243.0 122 97.5
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 2.4e-44 182.2 125 72.8
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 1.3e-42 176.4 128 69.5
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 3.9e-42 174.9 128 64.8
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 5.1e-42 174.5 125 70.4
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 1.1e-41 173.3 125 70.4
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 5.6e-41 171.0 127 66.9
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 1.2e-40 169.9 122 68.9
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 1.6e-40 169.5 126 62.7
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.6e-40 169.5 126 62.7
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 2.1e-40 169.1 124 70.2
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 6.2e-40 167.5 126 61.9
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 2.3e-39 165.6 120 65.8
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 4.0e-39 164.9 126 61.1
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 5.2e-39 164.5 123 67.5
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 6.8e-39 164.1 122 67.2
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 6.8e-39 164.1 122 67.2
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 2.0e-38 162.5 124 66.9
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 2.0e-38 162.5 122 67.2
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 5.8e-38 161.0 122 66.4
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 9.9e-38 160.2 126 63.5
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 1.3e-37 159.8 124 68.5
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 1.3e-37 159.8 125 64.0
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 1.7e-37 159.5 129 65.1
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 1.7e-37 159.5 134 60.4
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 1.7e-37 159.5 125 69.6
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 2.2e-37 159.1 119 63.0
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 2.2e-37 159.1 124 65.3
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 3.7e-37 158.3 129 66.7
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 3.7e-37 158.3 130 63.8
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 1.1e-36 156.8 126 66.7
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 1.9e-36 156.0 130 64.6
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 3.2e-36 155.2 125 62.4
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 7.1e-36 154.1 128 63.3
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 7.1e-36 154.1 120 65.0
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 7.1e-36 154.1 125 63.2
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 9.2e-36 153.7 134 59.7
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 3.5e-35 151.8 131 62.6
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 7.8e-35 150.6 122 62.3
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.3e-34 149.8 122 62.3
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.7e-34 149.4 122 64.8
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 1.7e-34 149.4 127 61.4
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 1.5e-33 146.4 127 63.0
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 3.3e-33 145.2 128 64.1
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 4.3e-33 144.8 125 60.0
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 4.3e-33 144.8 125 60.0
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 4.3e-33 144.8 126 61.9
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 9.6e-33 143.7 120 63.3
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 1.2e-32 143.3 127 58.3
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 1.1e-31 140.2 133 54.1
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 2.4e-31 139.0 130 58.5
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 3.1e-31 138.7 131 53.4
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 4.0e-31 138.3 122 62.3
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.0e-31 138.3 123 61.0
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.0e-31 138.3 123 61.0
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 4.0e-31 138.3 123 61.0
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 4.0e-31 138.3 133 54.1
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 5.2e-31 137.9 128 58.6
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 8.9e-31 137.1 126 54.8
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 8.9e-31 137.1 125 60.8
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 1.5e-30 136.3 128 56.2
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 2.0e-30 136.0 128 53.1
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 2.6e-30 135.6 133 54.9
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 3.4e-30 135.2 129 55.0
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 7.6e-30 134.0 127 56.7
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 1.3e-29 133.3 124 58.9
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 1.7e-29 132.9 112 58.9
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 6.4e-29 131.0 132 53.8
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 1.9e-28 129.4 134 53.7
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 1.9e-28 129.4 129 58.1
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 2.4e-28 129.0 129 57.4
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 3.2e-28 128.6 130 53.1
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 4.2e-28 128.3 127 50.4
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.7e-27 125.6 129 51.9
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 2.7e-27 125.6 104 66.3
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 3.5e-27 125.2 134 51.5
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 4.6e-27 124.8 116 57.8
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 4.6e-27 124.8 121 53.7
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 5.1e-26 121.3 124 53.2
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 6.6e-26 120.9 123 52.0
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 6.6e-26 120.9 123 52.0
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 1.5e-25 119.8 123 51.2
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 1.9e-25 119.4 132 48.5
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 4.3e-25 118.2 115 54.8
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 7.3e-25 117.5 123 50.4
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 7.3e-25 117.5 123 50.4
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 7.3e-25 117.5 123 50.4
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 7.3e-25 117.5 123 50.4
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 7.3e-25 117.5 123 50.4
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 1.6e-24 116.3 136 48.5
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 1.1e-23 113.6 123 45.5
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 1.4e-23 113.2 119 51.3
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 1.4e-23 113.2 76 72.4
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 1.8e-23 112.8 118 52.5
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 3.1e-23 112.1 123 48.0
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 5.3e-23 111.3 123 45.5
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 6.9e-23 110.9 124 48.4
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 2.0e-22 109.4 124 48.4
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 3.4e-22 108.6 123 45.5
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 4.4e-22 108.2 123 45.5
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 4.4e-22 108.2 123 45.5
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 7.6e-22 107.5 125 48.8
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 7.6e-22 107.5 123 51.2
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 9.9e-22 107.1 96 59.4
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 2.9e-21 105.5 122 47.5
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 4.9e-21 104.8 135 45.2
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 8.4e-21 104.0 123 45.5
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 1.1e-20 103.6 123 43.9
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 1.1e-20 103.6 123 43.9
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 1.9e-20 102.8 104 51.0
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 9.3e-20 100.5 110 54.5
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 7.9e-19 97.4 109 50.5
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 5.1e-18 94.7 122 45.1
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 6.6e-18 94.4 103 49.5
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 7.3e-17 90.9 105 44.8
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 8.1e-16 87.4 121 43.0
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 9.9e-14 80.5 91 48.4
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.3e-13 80.1 92 46.7
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 2.1e-11 72.8 104 49.0
SEGI_18606 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 2.1e-11 72.8 106 39.6
Mapoly0047s0021 Marchantia polymorpha HOM05D001618 ORTHO05D001486 3.4e-06 55.5 105 31.4
Phvul.009G223900 Phaseolus vulgaris HOM05D001618 ORTHO05D001486 5.8e-06 54.7 94 35.1
Medtr2g044020 Medicago truncatula HOM05D001618 ORTHO05D001486 1.0e-05 53.9 94 33.0


User provided reference genes

Program Settings