Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016211 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 9.3e-53 209.9 104 100.0
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.3e-38 162.9 98 87.8
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.8e-38 161.4 103 81.6
CSS0049977 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.8e-38 161.4 98 86.7
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 8.7e-35 150.2 106 79.2
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.1e-34 149.8 106 78.3
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 5.1e-27 124.4 105 65.7
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 1.1e-26 123.2 105 65.7
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 7.6e-23 110.5 107 58.9
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 1.0e-22 110.2 110 56.4
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 1.7e-22 109.4 106 57.5
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 4.2e-21 104.8 107 56.1
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 4.6e-20 101.3 102 55.9
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.5e-18 95.5 104 57.7
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 4.3e-18 94.7 108 57.4
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 3.7e-17 91.7 110 50.9
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 6.9e-16 87.4 111 52.3
SalBow1G2453 Salvia bowleyana HOM05D005882 ORTHO05D009143 6.9e-16 87.4 100 54.0
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 1.3e-14 83.2 102 55.9
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 6.5e-14 80.9 51 76.5
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 1.4e-13 79.7 109 48.6
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 1.2e-12 76.6 103 46.6
ECA246G2262 Erigeron canadensis HOM05D007293 ORTHO05D009143 4.6e-12 74.7 99 46.5
HanXRQChr08g0220621 Helianthus annuus HOM05D007293 ORTHO05D009143 4.6e-12 74.7 103 45.6
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 7.9e-12 73.9 103 42.7
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 1.0e-11 73.6 103 45.6
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 2.3e-11 72.4 80 50.0
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 2.3e-11 72.4 106 46.2
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.5e-10 69.7 106 44.3
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 1.5e-10 69.7 103 42.7
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 1.5e-10 69.7 108 42.6
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 2.5e-10 68.9 101 41.6
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 2.5e-10 68.9 105 42.9
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 3.3e-10 68.6 97 41.2
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 3.3e-10 68.6 103 43.7
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 5.7e-10 67.8 103 40.8
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 7.4e-10 67.4 100 42.0
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 7.4e-10 67.4 102 44.1
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 9.7e-10 67.0 100 42.0
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 9.7e-10 67.0 100 44.0
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 1.3e-09 66.6 99 42.4
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 1.7e-09 66.2 105 43.8
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 2.8e-09 65.5 102 42.2
MBI10_g11075_MAGBIO Magnolia biondii HOM05D007293 ORTHO05D009143 2.8e-09 65.5 58 56.9
PSO063G5020 Papaver somniferum HOM05D007293 ORTHO05D009143 2.8e-09 65.5 98 42.9
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 2.8e-09 65.5 63 54.0
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 3.7e-09 65.1 102 42.2
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 3.7e-09 65.1 102 42.2
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 4.8e-09 64.7 100 42.0
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 6.3e-09 64.3 100 41.0
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 8.2e-09 63.9 99 42.4
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 8.2e-09 63.9 100 42.0
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 8.2e-09 63.9 103 38.8
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 1.1e-08 63.5 102 46.1
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 1.4e-08 63.2 102 41.2
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 1.4e-08 63.2 102 41.2
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 1.4e-08 63.2 103 37.9
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 1.8e-08 62.8 103 40.8
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 2.4e-08 62.4 105 41.0
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 3.1e-08 62.0 102 41.2
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 4.1e-08 61.6 101 45.5
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 4.1e-08 61.6 103 37.9
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 5.3e-08 61.2 101 41.6
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 6.9e-08 60.8 101 41.6
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 6.9e-08 60.8 106 38.7
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 6.9e-08 60.8 106 38.7
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 6.9e-08 60.8 45 62.2
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 1.5e-07 59.7 105 44.8
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 1.5e-07 59.7 105 44.8
PSO832G1108 Papaver somniferum HOM05D007293 ORTHO05D009143 1.5e-07 59.7 98 41.8
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 1.5e-07 59.7 104 38.5
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 1.5e-07 59.7 104 38.5
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 2.0e-07 59.3 103 37.9
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 2.0e-07 59.3 105 44.8
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 2.6e-07 58.9 103 41.7
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 3.4e-07 58.5 106 40.6
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 4.5e-07 58.2 93 43.0
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 5.9e-07 57.8 108 38.9
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 7.7e-07 57.4 100 40.0
CDE04G1122 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 7.7e-07 57.4 103 39.8
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 7.7e-07 57.4 57 52.6
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 1.0e-06 57.0 102 39.2
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 1.3e-06 56.6 114 40.4
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 1.7e-06 56.2 105 38.1
PSO339G0117 Papaver somniferum HOM05D007293 ORTHO05D009143 2.2e-06 55.8 99 40.4
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 2.9e-06 55.5 104 39.4
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 2.9e-06 55.5 101 39.6
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 2.9e-06 55.5 63 47.6
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 5.0e-06 54.7 67 44.8
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 5.0e-06 54.7 102 38.2
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 5.0e-06 54.7 102 38.2
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 6.5e-06 54.3 99 32.3


User provided reference genes

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