Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 6.7e-57 223.8 112 100.0
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.0e-33 146.7 77 93.5
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.3e-32 141.7 77 89.6
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 1.7e-28 129.4 77 76.6
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 5.0e-28 127.9 76 78.9
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 6.5e-28 127.5 77 75.3
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 1.4e-27 126.3 77 77.9
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 1.9e-27 125.9 77 77.9
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 9.4e-27 123.6 76 75.0
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 2.7e-26 122.1 77 74.0
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 3.6e-26 121.7 76 75.0
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 3.6e-26 121.7 76 75.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 6.1e-26 120.9 76 75.0
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 6.1e-26 120.9 76 72.4
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 8.0e-26 120.6 76 71.1
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 8.0e-26 120.6 76 73.7
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 1.4e-25 119.8 76 72.4
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 1.4e-25 119.8 76 72.4
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 2.3e-25 119.0 76 73.7
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 2.3e-25 119.0 76 68.4
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 3.0e-25 118.6 110 55.5
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 3.9e-25 118.2 76 73.7
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 3.9e-25 118.2 76 72.4
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 5.2e-25 117.9 76 69.7
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 5.2e-25 117.9 76 73.7
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 5.2e-25 117.9 76 71.1
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.1e-24 116.7 76 72.4
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 1.1e-24 116.7 77 68.8
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 1.5e-24 116.3 77 64.9
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 1.5e-24 116.3 76 68.4
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.5e-24 116.3 76 69.7
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.5e-24 116.3 76 71.1
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 2.0e-24 115.9 75 68.0
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 2.0e-24 115.9 76 68.4
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 2.6e-24 115.5 76 68.4
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 3.3e-24 115.2 75 68.0
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 3.3e-24 115.2 76 68.4
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 4.4e-24 114.8 76 67.1
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 5.7e-24 114.4 76 67.1
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 5.7e-24 114.4 75 68.0
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 7.4e-24 114.0 76 67.1
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 9.7e-24 113.6 76 68.4
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 1.3e-23 113.2 76 67.1
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.7e-23 112.8 75 66.7
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 2.2e-23 112.5 76 67.1
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 2.8e-23 112.1 76 68.4
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 2.8e-23 112.1 76 65.8
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 3.7e-23 111.7 76 65.8
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 4.8e-23 111.3 76 65.8
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 8.2e-23 110.5 77 67.5
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 8.2e-23 110.5 78 65.4
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 8.2e-23 110.5 77 63.6
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 1.1e-22 110.2 76 64.5
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 1.4e-22 109.8 76 63.2
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 1.4e-22 109.8 76 67.1
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.8e-22 109.4 76 65.8
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.8e-22 109.4 77 64.9
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.8e-22 109.4 76 67.1
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 2.4e-22 109.0 76 65.8
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 3.1e-22 108.6 76 65.8
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 3.1e-22 108.6 76 67.1
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 4.1e-22 108.2 76 64.5
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 4.1e-22 108.2 76 64.5
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 4.1e-22 108.2 76 64.5
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 7.0e-22 107.5 76 63.2
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 7.0e-22 107.5 82 64.6
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 7.0e-22 107.5 90 57.8
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 7.0e-22 107.5 76 63.2
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 9.1e-22 107.1 75 64.0
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 9.1e-22 107.1 78 66.7
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 9.1e-22 107.1 76 63.2
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.2e-21 106.7 76 63.2
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 1.6e-21 106.3 76 65.8
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 1.6e-21 106.3 76 65.8
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 2.0e-21 105.9 76 61.8
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 3.5e-21 105.1 76 60.5
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.5e-21 105.1 76 63.2
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 7.7e-21 104.0 76 60.5
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.0e-20 103.6 76 61.8
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 1.7e-20 102.8 76 64.5
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 8.5e-20 100.5 78 61.5
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 1.5e-19 99.8 78 64.1
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 1.5e-19 99.8 78 64.1
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 1.5e-19 99.8 77 57.1
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 1.5e-19 99.8 76 60.5
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 2.5e-19 99.0 77 61.0
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 2.5e-19 99.0 76 63.2
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 4.2e-19 98.2 78 62.8
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 9.4e-19 97.1 78 61.5
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.6e-18 96.3 77 57.1
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 1.6e-18 96.3 84 57.1
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 1.6e-18 96.3 77 57.1
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.1e-18 95.9 78 61.5
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 2.1e-18 95.9 78 62.8
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.1e-18 95.9 78 60.3
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 2.7e-18 95.5 77 61.0
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.7e-18 95.5 77 63.6
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 2.7e-18 95.5 57 73.7
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 3.6e-18 95.1 77 58.4
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 4.7e-18 94.7 78 61.5
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 4.7e-18 94.7 78 61.5
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 4.7e-18 94.7 78 61.5
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 4.7e-18 94.7 78 61.5
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 4.7e-18 94.7 78 61.5
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 4.7e-18 94.7 78 61.5
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 4.7e-18 94.7 78 61.5
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 4.7e-18 94.7 78 61.5
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 8.0e-18 94.0 77 57.1
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 8.0e-18 94.0 78 61.5
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 1.0e-17 93.6 78 61.5
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 1.0e-17 93.6 78 61.5
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.0e-17 93.6 78 60.3
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 1.4e-17 93.2 77 58.4
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-17 93.2 77 58.4
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 1.4e-17 93.2 77 58.4
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 1.8e-17 92.8 78 59.0
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 1.8e-17 92.8 78 59.0
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.8e-17 92.8 77 54.5
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 2.3e-17 92.4 76 57.9
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 3.0e-17 92.0 77 57.1
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 4.0e-17 91.7 76 57.9
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 5.2e-17 91.3 77 53.2
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 5.2e-17 91.3 101 50.5
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 5.2e-17 91.3 78 59.0
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 6.7e-17 90.9 77 53.2
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 8.8e-17 90.5 56 71.4
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 1.2e-16 90.1 77 54.5
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.5e-16 89.7 78 56.4
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.5e-16 89.7 78 56.4
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 2.0e-16 89.4 78 56.4
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 2.0e-16 89.4 78 59.0
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 2.6e-16 89.0 78 56.4
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 3.3e-16 88.6 78 55.1
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 5.7e-16 87.8 76 57.9
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 7.5e-16 87.4 76 55.3
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.7e-15 86.3 76 52.6
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 2.8e-15 85.5 78 52.6
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 4.8e-15 84.7 99 46.5
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 8.2e-15 84.0 108 42.6
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 1.6e-13 79.7 48 75.0
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 7.7e-13 77.4 105 42.9
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 1.1e-11 73.6 109 40.4
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 9.4e-11 70.5 57 57.9
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 2.3e-09 65.9 65 49.2
CDE08G0834 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 6.8e-09 64.3 59 55.9
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 7.5e-08 60.8 60 50.0
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 9.8e-08 60.5 58 50.0
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.3e-07 60.1 47 55.3
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 1.3e-07 60.1 59 49.2
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 1.7e-07 59.7 58 50.0
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 8.3e-07 57.4 45 55.6
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 9.1e-06 53.9 42 54.8


User provided reference genes

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