Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016203 Camellia sinensis var. sinensis HOM05D000096 ORTHO05D000045 1.6e-32 142.1 69 100.0
CSS0006415 Camellia sinensis var. sinensis HOM05D000096 ORTHO05D000045 4.0e-20 100.9 68 72.1
CiPaw.06G004900 Carya illinoinensis HOM05D000096 ORTHO05D000045 1.6e-16 89.0 86 52.3
CiPaw.14G013400 Carya illinoinensis HOM05D000096 ORTHO05D000045 2.7e-16 88.2 86 48.8
CiPaw.01G012000 Carya illinoinensis HOM05D000096 ORTHO05D000045 7.8e-16 86.7 86 51.2
CiPaw.03G085400 Carya illinoinensis HOM05D000096 ORTHO05D000045 7.8e-16 86.7 86 47.7
CANSAT25G0106 Cannabis sativa HOM05D000096 ORTHO05D000045 1.0e-15 86.3 86 48.8
CiPaw.07G209500 Carya illinoinensis HOM05D000096 ORTHO05D000045 1.7e-15 85.5 86 50.0
CiPaw.07G018800 Carya illinoinensis HOM05D000096 ORTHO05D000045 5.1e-15 84.0 86 50.0
CANSAT25G2856 Cannabis sativa HOM05D000096 ORTHO05D000045 6.6e-15 83.6 86 47.7
CiPaw.09G189900 Carya illinoinensis HOM05D000096 ORTHO05D000045 6.6e-15 83.6 86 48.8
CANSAT25G0821 Cannabis sativa HOM05D000096 ORTHO05D000045 8.7e-15 83.2 86 47.7
CiPaw.05G146400 Carya illinoinensis HOM05D000096 ORTHO05D000045 8.7e-15 83.2 86 46.5
CANSAT64G1799 Cannabis sativa HOM05D000096 ORTHO05D000045 1.1e-14 82.8 86 48.8
CANSAT01G2209 Cannabis sativa HOM05D000096 ORTHO05D000045 1.5e-14 82.4 87 44.8
CANSAT01G3138 Cannabis sativa HOM05D000096 ORTHO05D000045 1.5e-14 82.4 87 44.8
CANSAT56G4396 Cannabis sativa HOM05D000096 ORTHO05D000045 1.5e-14 82.4 87 44.8
CANSAT11G0363 Cannabis sativa HOM05D000096 ORTHO05D000045 1.9e-14 82.0 86 47.7
CANSAT78G0229 Cannabis sativa HOM05D000096 ORTHO05D000045 1.9e-14 82.0 87 44.8
CiPaw.01G058000 Carya illinoinensis HOM05D000096 ORTHO05D000045 9.6e-14 79.7 86 46.5
CiPaw.08G106200 Carya illinoinensis HOM05D000096 ORTHO05D000045 9.6e-14 79.7 73 50.7
CiPaw.07G195500 Carya illinoinensis HOM05D000096 ORTHO05D000045 4.8e-13 77.4 86 46.5
CANSAT35G1812 Cannabis sativa HOM05D000096 ORTHO05D000045 8.1e-13 76.6 87 42.5
Hma1.2p1_1453F.1_g284330 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 8.1e-13 76.6 85 43.5
EL10Ac1g01294 Beta vulgaris HOM05D000096 ORTHO05D000045 1.4e-12 75.9 86 39.5
CiPaw.10G120400 Carya illinoinensis HOM05D000096 ORTHO05D000045 2.4e-12 75.1 79 49.4
Dinv14086 Davidia involucrata HOM05D000096 ORTHO05D000045 3.1e-12 74.7 86 46.5
CiPaw.04G088100 Carya illinoinensis HOM05D000096 ORTHO05D000045 4.0e-12 74.3 79 50.6
CiPaw.15G028600 Carya illinoinensis HOM05D000096 ORTHO05D000045 4.0e-12 74.3 79 50.6
ECA233G4800 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.0e-12 74.3 87 46.0
SGA_v2.0_scaffold257G45688 Striga asiatica HOM05D000011 ORTHO05D000018 4.0e-12 74.3 86 46.5
ECA248G1451 Erigeron canadensis HOM05D000096 ORTHO05D000045 5.3e-12 73.9 87 46.0
EL10Ac1g01899 Beta vulgaris HOM05D000096 ORTHO05D000045 6.9e-12 73.6 86 37.2
CANSAT01G2838 Cannabis sativa HOM05D000096 ORTHO05D000045 6.9e-12 73.6 86 43.0
Oeu022949.1 Olea europaea HOM05D000096 ORTHO05D000045 1.2e-11 72.8 85 45.9
Oeu058529.2 Olea europaea HOM05D000096 ORTHO05D000045 1.2e-11 72.8 85 45.9
CiPaw.02G003800 Carya illinoinensis HOM05D000096 ORTHO05D000045 1.5e-11 72.4 79 48.1
CiPaw.09G061200 Carya illinoinensis HOM05D000096 ORTHO05D000045 1.5e-11 72.4 46 67.4
Cc07_g19800 Coffea canephora HOM05D000096 ORTHO05D000045 2.6e-11 71.6 86 40.7
ECA236G1250 Erigeron canadensis HOM05D000096 ORTHO05D001319 3.4e-11 71.2 87 43.7
CiPaw.08G169300 Carya illinoinensis HOM05D000096 ORTHO05D000045 4.5e-11 70.9 46 65.2
EL10Ac4g08451 Beta vulgaris HOM05D000096 ORTHO05D000045 9.9e-11 69.7 86 37.2
EL10Ac5g10502 Beta vulgaris HOM05D000096 ORTHO05D000045 9.9e-11 69.7 86 36.0
EL10Ac2g03172 Beta vulgaris HOM05D000096 ORTHO05D000045 1.7e-10 68.9 86 34.9
Sopen02g010400 Solanum pennellii HOM05D000096 ORTHO05D000045 1.7e-10 68.9 86 39.5
Sopen02g028420 Solanum pennellii HOM05D000096 ORTHO05D000901 1.7e-10 68.9 86 39.5
Sopen03g017760 Solanum pennellii HOM05D000096 ORTHO05D000045 1.7e-10 68.9 86 39.5
Sopen12g014760 Solanum pennellii HOM05D000096 ORTHO05D000045 1.7e-10 68.9 86 39.5
Migut.M00581 Erythranthe guttata HOM05D000096 ORTHO05D000045 2.2e-10 68.6 86 41.9
Lsat_1_v5_gn_5_123540 Lactuca sativa HOM05D000096 ORTHO05D000045 2.2e-10 68.6 71 47.9
Oeu039608.1 Olea europaea HOM05D000096 ORTHO05D000045 2.9e-10 68.2 76 47.4
CiPaw.14G107300 Carya illinoinensis HOM05D000096 ORTHO05D000045 3.8e-10 67.8 79 45.6
FvH4_5g24553 Fragaria vesca HOM05D000096 ORTHO05D000045 4.9e-10 67.4 89 41.6
FvH4_3g36631 Fragaria vesca HOM05D000096 ORTHO05D000045 6.4e-10 67.0 89 41.6
Oeu023669.1 Olea europaea HOM05D000096 ORTHO05D000045 8.4e-10 66.6 84 42.9
Oeu024546.1 Olea europaea HOM05D000096 ORTHO05D000045 1.1e-09 66.2 86 38.4
EL10As19g24194 Beta vulgaris HOM05D000096 ORTHO05D000045 1.4e-09 65.9 46 60.9
Cc02_g03810 Coffea canephora HOM05D000096 ORTHO05D000045 1.4e-09 65.9 71 42.3
Oeu038389.1 Olea europaea HOM05D000096 ORTHO05D000045 1.9e-09 65.5 83 43.4
CSS0000217 Camellia sinensis var. sinensis HOM05D000096 ORTHO05D000045 2.4e-09 65.1 72 41.7
CSS0017814 Camellia sinensis var. sinensis HOM05D000096 ORTHO05D000045 2.4e-09 65.1 72 41.7
Oeu038148.1 Olea europaea HOM05D000096 ORTHO05D000045 3.2e-09 64.7 86 37.2
EL10Ac6g15055 Beta vulgaris HOM05D000096 ORTHO05D000045 4.2e-09 64.3 46 63.0
EL10Ac8g20308 Beta vulgaris HOM05D000096 ORTHO05D000045 4.2e-09 64.3 46 63.0
CSS0038568 Camellia sinensis var. sinensis HOM05D000096 ORTHO05D000045 4.2e-09 64.3 72 40.3
CSS0041048 Camellia sinensis var. sinensis HOM05D000096 ORTHO05D000045 4.2e-09 64.3 72 41.7
ECA232G2394 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.2e-09 64.3 86 38.4
Rhsim07G0171400 Rhododendron simsii HOM05D000096 ORTHO05D000045 4.2e-09 64.3 81 37.0
EL10Ac5g11439 Beta vulgaris HOM05D000096 ORTHO05D000045 5.4e-09 63.9 46 63.0
CSS0010303 Camellia sinensis var. sinensis HOM05D000096 ORTHO05D000045 5.4e-09 63.9 72 41.7
Oeu021551.1 Olea europaea HOM05D000096 ORTHO05D000045 5.4e-09 63.9 67 44.8
PSO063G7304 Papaver somniferum HOM05D000096 ORTHO05D000045 7.1e-09 63.5 76 43.4
Zm00001eb265920 Zea mays HOM05D000096 ORTHO05D000045 9.3e-09 63.2 87 39.1
EL10Ac5g11745 Beta vulgaris HOM05D000096 ORTHO05D000045 1.2e-08 62.8 46 60.9
CiPaw.06G067600 Carya illinoinensis HOM05D000096 ORTHO05D000045 1.2e-08 62.8 65 49.2
PSO832G3507 Papaver somniferum HOM05D000096 ORTHO05D000045 1.2e-08 62.8 87 36.8
CSS0031375 Camellia sinensis var. sinensis HOM05D000096 ORTHO05D000045 1.6e-08 62.4 72 38.9
Oeu028848.1 Olea europaea HOM05D000096 ORTHO05D000045 1.6e-08 62.4 87 40.2
EL10Ac5g12706 Beta vulgaris HOM05D000096 ORTHO05D000045 2.1e-08 62.0 52 48.1
PSO170G4992 Papaver somniferum HOM05D000096 ORTHO05D000045 2.1e-08 62.0 87 37.9
Aqoxy4G02573 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 2.7e-08 61.6 89 36.0
EL10Ac1g01258 Beta vulgaris HOM05D000096 ORTHO05D000045 2.7e-08 61.6 64 50.0
PSO357G0008 Papaver somniferum HOM05D000096 ORTHO05D000045 2.7e-08 61.6 85 37.6
TPR.G7224 Trifolium pratense HOM05D000096 ORTHO05D000045 2.7e-08 61.6 90 32.2
Medtr2g008500 Medicago truncatula HOM05D000096 ORTHO05D000045 3.5e-08 61.2 86 33.7
Medtr7g070710 Medicago truncatula HOM05D000096 ORTHO05D000045 3.5e-08 61.2 86 33.7
PSO170G2293 Papaver somniferum HOM05D000096 ORTHO05D000045 4.6e-08 60.8 73 43.8
PSO478G3149 Papaver somniferum HOM05D000096 ORTHO05D000045 4.6e-08 60.8 64 46.9
PSO832G2110 Papaver somniferum HOM05D000096 ORTHO05D000045 4.6e-08 60.8 87 34.5
Rhsim07G0140000 Rhododendron simsii HOM05D000096 ORTHO05D000045 4.6e-08 60.8 81 35.8
RcHm_v2.0_Chr5g0013161 Rosa chinensis HOM05D000096 ORTHO05D000045 4.6e-08 60.8 89 39.3
Aqoxy3G01600 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 6.0e-08 60.5 87 34.5
ECA246G4273 Erigeron canadensis HOM05D000096 ORTHO05D000045 6.0e-08 60.5 71 42.3
PSO017G0292 Papaver somniferum HOM05D000096 ORTHO05D000045 6.0e-08 60.5 87 39.1
PSO170G3273 Papaver somniferum HOM05D000096 ORTHO05D000045 6.0e-08 60.5 77 41.6
ECA240G0844 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.9e-08 60.1 71 42.3
Rhsim02G0030300 Rhododendron simsii HOM05D000096 ORTHO05D000045 7.9e-08 60.1 89 36.0
Aqoxy3G01378 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 1.0e-07 59.7 72 44.4
EL10As4g23427 Beta vulgaris HOM05D000096 ORTHO05D000045 1.0e-07 59.7 46 60.9
ECA240G2992 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.0e-07 59.7 71 42.3
ECA246G2596 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.3e-07 59.3 71 42.3
Aqoxy7G02589 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 1.8e-07 58.9 89 34.8
Lalb_Chr09g0328691 Lupinus albus HOM05D000096 ORTHO05D000045 1.8e-07 58.9 72 40.3
Rhsim02G0178000 Rhododendron simsii HOM05D000096 ORTHO05D000045 1.8e-07 58.9 72 40.3
Rhsim06G0045600 Rhododendron simsii HOM05D000096 ORTHO05D000045 1.8e-07 58.9 89 34.8
Rhsim07G0181300 Rhododendron simsii HOM05D000096 ORTHO05D000045 1.8e-07 58.9 81 34.6
Rhsim11G0005800 Rhododendron simsii HOM05D000096 ORTHO05D000045 1.8e-07 58.9 89 34.8
RhsimUnG0164500 Rhododendron simsii HOM05D000096 ORTHO05D000045 1.8e-07 58.9 89 34.8
EL10Ac7g17395 Beta vulgaris HOM05D000096 ORTHO05D000045 2.3e-07 58.5 46 47.8
EL10Ac7g17443 Beta vulgaris HOM05D007854 ORTHO05D000045 2.3e-07 58.5 72 38.9
CANSAT01G2094 Cannabis sativa HOM05D000096 ORTHO05D000045 2.3e-07 58.5 86 33.7
PSO063G6331 Papaver somniferum HOM05D000096 ORTHO05D000045 2.3e-07 58.5 73 39.7
Rhsim01G0084900 Rhododendron simsii HOM05D000096 ORTHO05D000045 3.9e-07 57.8 81 33.3
TPR.G30473 Trifolium pratense HOM05D000096 ORTHO05D000045 3.9e-07 57.8 46 54.3
PSO675G1174 Papaver somniferum HOM05D000096 ORTHO05D000045 5.1e-07 57.4 77 37.7
TPR.G34078 Trifolium pratense HOM05D000096 ORTHO05D000045 5.1e-07 57.4 86 37.2
Actinidia03819 Actinidia chinensis HOM05D000096 ORTHO05D000045 6.7e-07 57.0 81 30.9
PSO729G0148 Papaver somniferum HOM05D000096 ORTHO05D000045 6.7e-07 57.0 46 56.5
EL10Ac8g19361 Beta vulgaris HOM05D000096 ORTHO05D000045 8.7e-07 56.6 41 51.2
PSO063G4809 Papaver somniferum HOM05D000096 ORTHO05D000045 8.7e-07 56.6 72 41.7
PSO782G4957 Papaver somniferum HOM05D000096 ORTHO05D000045 8.7e-07 56.6 87 31.0
Rhsim12G0094200 Rhododendron simsii HOM05D000096 ORTHO05D000045 8.7e-07 56.6 89 33.7
Aqoxy2G02004 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 1.1e-06 56.2 33 72.7
CANSAT11G0522 Cannabis sativa HOM05D000096 ORTHO05D000045 1.1e-06 56.2 87 29.9
PSO017G5134 Papaver somniferum HOM05D000096 ORTHO05D000045 1.1e-06 56.2 72 37.5
Rhsim11G0010700 Rhododendron simsii HOM05D000096 ORTHO05D000045 1.1e-06 56.2 81 30.9
Sopen10g018380 Solanum pennellii HOM05D000096 ORTHO05D000045 1.1e-06 56.2 87 32.2
TPR.G34836 Trifolium pratense HOM05D000096 ORTHO05D000045 1.5e-06 55.8 91 31.9
FvH4_3g27562 Fragaria vesca HOM05D000096 ORTHO05D000045 1.9e-06 55.5 46 56.5
Glyma.05G078600 Glycine max HOM05D000096 ORTHO05D000045 1.9e-06 55.5 84 33.3
Lj4g0022780 Lotus japonicus HOM05D000096 ORTHO05D000045 1.9e-06 55.5 59 45.8
PSO478G2944 Papaver somniferum HOM05D000096 ORTHO05D000045 1.9e-06 55.5 73 38.4
Sopen01g012730 Solanum pennellii HOM05D000096 ORTHO05D000045 2.5e-06 55.1 87 31.0
Sopen09g023800 Solanum pennellii HOM05D000096 ORTHO05D000045 2.5e-06 55.1 87 31.0
Sopen11g021980 Solanum pennellii HOM05D000096 ORTHO05D000045 2.5e-06 55.1 87 31.0
TPR.G20278 Trifolium pratense HOM05D000096 ORTHO05D000045 2.5e-06 55.1 91 30.8
TPR.G40023 Trifolium pratense HOM05D000096 ORTHO05D000045 2.5e-06 55.1 45 53.3
Glyma.10G108221 Glycine max HOM05D000096 ORTHO05D000045 3.3e-06 54.7 73 39.7
PSO063G3034 Papaver somniferum HOM05D000096 ORTHO05D000045 3.3e-06 54.7 85 34.1
ECA240G0922 Erigeron canadensis HOM05D000096 ORTHO05D000045 4.3e-06 54.3 86 32.6
PSO700G0199 Papaver somniferum HOM05D000096 ORTHO05D000045 4.3e-06 54.3 72 37.5
CANSAT01G0186 Cannabis sativa HOM05D000096 ORTHO05D000045 5.6e-06 53.9 86 29.1
CANSAT01G0869 Cannabis sativa HOM05D000096 ORTHO05D000045 5.6e-06 53.9 86 29.1
PSO063G4219 Papaver somniferum HOM05D000096 ORTHO05D000045 5.6e-06 53.9 77 32.5
Pp3s62_90 Physcomitrium patens HOM05D000096 ORTHO05D000045 5.6e-06 53.9 90 37.8
PSO017G4900 Papaver somniferum HOM05D000096 ORTHO05D000045 7.4e-06 53.5 72 34.7
Aqoxy2G01284 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 9.6e-06 53.1 54 48.1
CANSAT01G1423 Cannabis sativa HOM05D000096 ORTHO05D000045 9.6e-06 53.1 86 29.1
CAN.G419.26 Capsicum annuum HOM05D000096 ORTHO05D000045 9.6e-06 53.1 87 33.3
Medtr3g085530 Medicago truncatula HOM05D000096 ORTHO05D000045 9.6e-06 53.1 48 41.7


User provided reference genes

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