Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 7.9e-140 500.4 240 100.0
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 7.3e-53 211.5 124 83.1
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 1.3e-52 210.7 130 78.5
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 6.2e-52 208.4 130 77.7
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 1.1e-51 207.6 130 79.2
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.8e-51 206.8 130 77.7
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 3.1e-51 206.1 130 77.7
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 4.0e-51 205.7 146 69.2
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 9.0e-51 204.5 130 76.2
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 2.0e-50 203.4 146 66.4
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 2.6e-50 203.0 130 76.9
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 2.6e-50 203.0 146 67.8
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 3.4e-50 202.6 157 66.2
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 5.8e-50 201.8 130 75.4
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 7.6e-50 201.4 148 66.2
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 9.9e-50 201.1 130 74.6
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.2e-49 199.9 130 75.4
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 2.2e-49 199.9 130 75.4
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 3.8e-49 199.1 130 73.8
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 4.9e-49 198.7 130 73.1
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 4.9e-49 198.7 130 73.8
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 4.9e-49 198.7 130 74.6
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 6.4e-49 198.4 130 74.6
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 8.4e-49 198.0 128 75.8
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 8.4e-49 198.0 130 74.6
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 1.1e-48 197.6 130 72.3
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 1.1e-48 197.6 130 70.8
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.4e-48 197.2 150 66.0
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.9e-48 196.8 150 66.7
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 2.4e-48 196.4 150 65.3
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 2.4e-48 196.4 130 75.4
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 2.4e-48 196.4 128 75.8
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 2.4e-48 196.4 126 76.2
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 2.4e-48 196.4 130 73.8
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 3.2e-48 196.1 130 72.3
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 3.2e-48 196.1 130 75.4
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 4.2e-48 195.7 137 72.3
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 7.1e-48 194.9 130 70.8
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 7.1e-48 194.9 130 70.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 7.1e-48 194.9 130 74.6
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 7.1e-48 194.9 130 70.8
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 7.1e-48 194.9 130 73.1
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 7.1e-48 194.9 130 70.0
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 1.2e-47 194.1 130 73.1
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.2e-47 194.1 130 71.5
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 1.2e-47 194.1 134 67.9
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 1.6e-47 193.7 130 69.2
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 1.6e-47 193.7 129 72.1
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 1.6e-47 193.7 128 75.0
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 2.1e-47 193.4 130 73.8
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.1e-47 193.4 130 69.2
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.7e-47 193.0 128 71.9
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 4.6e-47 192.2 130 70.0
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 4.6e-47 192.2 130 70.0
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 4.6e-47 192.2 128 73.4
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 6.0e-47 191.8 130 73.1
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 6.0e-47 191.8 130 70.8
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 7.9e-47 191.4 130 69.2
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 1.0e-46 191.0 130 71.5
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.0e-46 191.0 130 70.0
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 1.3e-46 190.7 130 69.2
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.3e-46 190.7 130 69.2
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-46 190.3 130 70.8
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.8e-46 190.3 130 70.8
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 1.8e-46 190.3 130 70.8
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.3e-46 189.9 128 72.7
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 2.3e-46 189.9 130 72.3
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 3.0e-46 189.5 130 68.5
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 3.0e-46 189.5 130 68.5
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.9e-46 189.1 130 68.5
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 3.9e-46 189.1 130 70.0
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 5.1e-46 188.7 149 64.4
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 5.1e-46 188.7 130 68.5
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 5.1e-46 188.7 130 70.0
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 5.1e-46 188.7 149 63.8
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 6.7e-46 188.3 130 69.2
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 6.7e-46 188.3 130 69.2
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 6.7e-46 188.3 130 69.2
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 8.7e-46 188.0 130 68.5
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 8.7e-46 188.0 128 72.7
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.1e-45 187.6 129 70.5
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 1.9e-45 186.8 130 68.5
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 1.9e-45 186.8 130 69.2
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 2.5e-45 186.4 130 67.7
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 2.5e-45 186.4 134 67.9
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 2.5e-45 186.4 130 70.0
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.3e-45 186.0 134 68.7
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 3.3e-45 186.0 130 69.2
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 3.3e-45 186.0 128 70.3
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.3e-45 185.7 130 69.2
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 5.6e-45 185.3 130 67.7
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 7.4e-45 184.9 130 67.7
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 7.4e-45 184.9 130 70.8
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 9.6e-45 184.5 130 67.7
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 1.3e-44 184.1 128 70.3
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 1.6e-44 183.7 130 68.5
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.6e-44 183.7 130 68.5
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 2.8e-44 183.0 130 66.9
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 3.7e-44 182.6 130 68.5
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.7e-44 182.6 129 68.2
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 3.7e-44 182.6 130 67.7
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 4.8e-44 182.2 124 71.0
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 4.8e-44 182.2 140 63.6
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 4.8e-44 182.2 130 68.5
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 6.2e-44 181.8 136 66.2
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 8.1e-44 181.4 125 69.6
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.1e-43 181.0 149 61.7
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 1.1e-43 181.0 135 66.7
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 4.0e-43 179.1 152 63.2
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 6.9e-43 178.3 130 68.5
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 9.0e-43 177.9 131 68.7
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 1.2e-42 177.6 130 66.2
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 1.5e-42 177.2 130 66.9
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 1.5e-42 177.2 130 66.9
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 1.5e-42 177.2 129 69.8
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 1.5e-42 177.2 130 68.5
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 2.6e-42 176.4 130 66.9
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.6e-42 176.4 124 68.5
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.4e-42 176.0 137 63.5
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 3.4e-42 176.0 128 65.6
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 4.5e-42 175.6 130 68.5
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.5e-42 175.6 130 68.5
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.5e-42 175.6 130 68.5
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 4.5e-42 175.6 138 63.8
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 5.8e-42 175.3 130 67.7
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 7.6e-42 174.9 130 63.1
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 1.3e-41 174.1 128 65.6
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.7e-41 173.7 130 68.5
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 3.8e-41 172.6 130 66.9
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 8.4e-41 171.4 130 66.2
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.1e-40 171.0 130 62.3
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.9e-40 170.2 130 61.5
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 2.4e-40 169.9 130 66.2
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 3.2e-40 169.5 111 74.8
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 3.2e-40 169.5 130 66.2
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 7.1e-40 168.3 113 73.5
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 9.3e-40 167.9 144 61.1
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.1e-39 166.8 128 65.6
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 3.5e-39 166.0 121 68.6
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 3.5e-39 166.0 128 64.8
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 1.0e-38 164.5 121 66.1
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 3.0e-38 162.9 190 47.9
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.3e-36 157.5 131 60.3
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 9.0e-35 151.4 132 56.8
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 1.7e-33 147.1 150 52.7
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 1.8e-30 137.1 128 58.6
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 2.4e-27 126.7 131 53.4
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 5.5e-24 115.5 79 70.9
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 6.1e-23 112.1 72 77.8
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 2.3e-22 110.2 82 65.9
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 1.2e-18 97.8 123 43.1
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 1.1e-16 91.3 81 59.3
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 1.4e-16 90.9 103 42.7
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 2.5e-16 90.1 120 37.5
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 3.6e-15 86.3 109 43.1
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 8.2e-12 75.1 119 34.5
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 1.1e-11 74.7 117 35.0
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 3.4e-10 69.7 75 49.3
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.7e-10 68.6 137 36.5
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 1.3e-09 67.8 122 35.2
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 7.2e-08 62.0 70 45.7
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.7e-07 60.1 52 51.9
CsaV3_6G016170 Cucumis sativus L. HOM05D004149 ORTHO05D174512 8.8e-06 55.1 64 46.9


User provided reference genes

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