Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016195 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 1.2e-157 560.8 605 100.0
Rhsim01G0097100 Rhododendron simsii HOM05D003689 ORTHO05D003950 2.0e-38 164.9 628 59.9
Dinv41614 Davidia involucrata HOM05D003689 ORTHO05D003950 2.9e-37 161.0 129 67.4
Hma1.2p1_1151F.1_g262016 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 3.5e-35 154.1 129 64.3
Hma1.2p1_3266F.1_g334670 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 6.6e-34 149.8 95 78.9
GSVIVG01015378001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.1e-33 149.1 130 62.3
Cc06_g09790 Coffea canephora HOM05D003689 ORTHO05D003950 2.1e-32 144.8 103 69.9
PGSC0003DMG400024327 Solanum tuberosum HOM05D003689 ORTHO05D003950 1.8e-31 141.7 626 54.2
QL02p044325 Quercus lobata HOM05D003689 ORTHO05D003950 4.0e-31 140.6 98 69.4
Lj7A652T76 Lonicera japonica HOM05D003689 ORTHO05D003950 1.2e-30 139.0 88 77.3
vmacro20709 Vaccinium macrocarpon HOM05D003689 ORTHO05D003950 2.2e-29 134.8 299 71.6
Actinidia32677 Actinidia chinensis HOM05D001279 ORTHO05D003950 1.4e-28 132.1 122 58.2
Actinidia32678 Actinidia chinensis HOM05D003689 ORTHO05D003950 1.9e-28 131.7 126 58.7
Thecc.09G108800 Theobroma cacao HOM05D003689 ORTHO05D003950 2.4e-28 131.3 95 66.3
Haze_25759 Corylus avellana HOM05D003689 ORTHO05D003950 2.1e-27 128.3 90 67.8
Sabra18G0068800 Salix brachista HOM05D003689 ORTHO05D003950 3.5e-27 127.5 98 63.3
ClCG06G008630 Citrullus lanatus HOM05D003689 ORTHO05D003950 7.8e-27 126.3 93 65.6
Gohir.D06G062000 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.3e-26 125.6 96 65.6
Gorai.010G072200 Gossypium raimondii HOM05D003689 ORTHO05D003950 1.3e-26 125.6 96 65.6
PSO210G7239 Papaver somniferum HOM05D003689 ORTHO05D003950 6.6e-26 123.2 98 64.3
MELO3C025352.2 Cucumis melo HOM05D003689 ORTHO05D003950 1.1e-25 122.5 92 64.1
Potri.018G081700 Populus trichocarpa HOM05D003689 ORTHO05D003950 1.1e-25 122.5 98 62.2
TAR624G0802 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.1e-25 122.5 128 53.1
CsaV3_1G025520 Cucumis sativus L. HOM05D003689 ORTHO05D003950 1.5e-25 122.1 92 64.1
Gohir.A06G063300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 1.5e-25 122.1 95 64.2
Sed0017853 Sechium edule HOM05D003689 ORTHO05D003950 1.9e-25 121.7 92 64.1
Eucgr.C03818 Eucalyptus grandis HOM05D003689 ORTHO05D003950 2.5e-25 121.3 95 64.2
QL02p045402 Quercus lobata HOM05D003689 ORTHO05D003950 2.5e-25 121.3 80 73.8
Ciclev10007776m.g Citrus clementina HOM05D003689 ORTHO05D003950 3.3e-25 120.9 114 57.0
Peaxi162Scf00231g00023 Petunia axillaris HOM05D003689 ORTHO05D003950 5.6e-25 120.2 94 67.0
Glyma.08G038200 Glycine max HOM05D003689 ORTHO05D003950 1.2e-24 119.0 93 63.4
PSO210G3978 Papaver somniferum HOM05D003689 ORTHO05D003950 1.2e-24 119.0 104 60.6
COL.COLO4_34846 Corchorus olitorius HOM05D001279 ORTHO05D001636 1.6e-24 118.6 100 61.0
Migut.J01154 Erythranthe guttata HOM05D003689 ORTHO05D003950 1.6e-24 118.6 98 64.3
Nitab4.5_0004562g0020 Nicotiana tabacum HOM05D003689 ORTHO05D003950 1.6e-24 118.6 126 54.0
MSTRG.6008 Avicennia marina HOM05D003689 ORTHO05D003950 2.8e-24 117.9 86 72.1
CAN.G238.2 Capsicum annuum HOM05D003689 ORTHO05D003950 4.7e-24 117.1 129 55.8
FAN23G2461 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.7e-24 117.1 98 63.3
Lalb_Chr05g0222931 Lupinus albus HOM05D003689 ORTHO05D003950 4.7e-24 117.1 94 63.8
Nitab4.5_0000114g0090 Nicotiana tabacum HOM05D003689 ORTHO05D003950 4.7e-24 117.1 90 66.7
Prupe.7G232600 Prunus persica HOM05D003689 ORTHO05D003950 6.2e-24 116.7 92 64.1
Cfa003251 Carpinus fangiana HOM05D003689 ORTHO05D003950 8.1e-24 116.3 84 64.3
MD15G1183500 Malus domestica HOM05D003689 ORTHO05D003950 1.1e-23 115.9 102 59.8
FAN26G3272 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.4e-23 115.5 113 55.8
QL12p026389 Quercus lobata HOM05D003689 ORTHO05D003950 1.4e-23 115.5 98 59.2
CiPaw.07G207300 Carya illinoinensis HOM05D003689 ORTHO05D003950 3.1e-23 114.4 85 65.9
FvH4_1g04540 Fragaria vesca HOM05D003689 ORTHO05D003950 4.0e-23 114.0 114 56.1
FAN28G1273 Fragaria x ananassa HOM05D003689 ORTHO05D003950 4.0e-23 114.0 114 56.1
Solyc07g032380.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 9.0e-23 112.8 82 70.7
VMungo0331G0581 Vigna mungo HOM05D003689 ORTHO05D003950 1.2e-22 112.5 89 61.8
Glyma.05G230700 Glycine max HOM05D003689 ORTHO05D003950 1.5e-22 112.1 88 63.6
Lalb_Chr16g0388171 Lupinus albus HOM05D003689 ORTHO05D003950 2.0e-22 111.7 91 64.8
Prupe.1G452700 Prunus persica HOM05D003689 ORTHO05D003950 2.0e-22 111.7 96 56.2
FAN20G2410 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.6e-22 111.3 92 60.9
MD08G1118600 Malus domestica HOM05D003689 ORTHO05D003950 2.6e-22 111.3 93 58.1
Duzib150G1680 Durio zibethinus HOM05D003689 ORTHO05D003950 3.4e-22 110.9 79 64.6
RcHm_v2.0_Chr2g0090251 Rosa chinensis HOM05D003689 ORTHO05D003950 3.4e-22 110.9 114 55.3
Lj4g0026082 Lotus japonicus HOM05D003689 ORTHO05D003950 4.4e-22 110.5 83 67.5
Sopen07g016320 Solanum pennellii HOM05D003689 ORTHO05D003950 4.4e-22 110.5 84 70.2
Thecc.09G039700 Theobroma cacao HOM05D003689 ORTHO05D003950 5.8e-22 110.2 79 68.4
Phvul.010G165600 Phaseolus vulgaris HOM05D003689 ORTHO05D003950 7.6e-22 109.8 73 71.2
GSVIVG01035672001 Vitis vinifera HOM05D003689 ORTHO05D003950 1.3e-21 109.0 126 49.2
Cfa013343 Carpinus fangiana HOM05D003689 ORTHO05D003950 2.2e-21 108.2 90 62.2
Haze_21848 Corylus avellana HOM05D003689 ORTHO05D003950 2.2e-21 108.2 125 51.2
Gohir.A08G250800 Gossypium hirsutum HOM05D003689 ORTHO05D003950 4.9e-21 107.1 86 62.8
CSS0006196 Camellia sinensis var. sinensis HOM05D003689 ORTHO05D003950 6.4e-21 106.7 74 70.3
FvH4_2g36130 Fragaria vesca HOM05D003689 ORTHO05D003950 6.4e-21 106.7 89 59.6
FAN27G3406 Fragaria x ananassa HOM05D003689 ORTHO05D003950 6.4e-21 106.7 89 59.6
Gohir.D08G272300 Gossypium hirsutum HOM05D003689 ORTHO05D003950 8.4e-21 106.3 82 64.6
Gorai.004G290700 Gossypium raimondii HOM05D003689 ORTHO05D003950 8.4e-21 106.3 82 64.6
HanXRQChr06g0180011 Helianthus annuus HOM05D003689 ORTHO05D003950 8.4e-21 106.3 122 52.5
RcHm_v2.0_Chr6g0305741 Rosa chinensis HOM05D003689 ORTHO05D003950 8.4e-21 106.3 77 64.9
Sp6g23340 Schrenkiella parvula HOM05D000055 ORTHO05D003950 1.1e-20 105.9 99 53.5
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 1.9e-20 105.1 112 47.3
Lalb_Chr14g0371561 Lupinus albus HOM05D003689 ORTHO05D003950 3.2e-20 104.4 84 65.5
BcaC04g19516 Brassica carinata HOM05D000055 ORTHO05D000057 4.2e-20 104.0 84 59.5
C09p54880 Brassica napus HOM05D000055 ORTHO05D003950 4.2e-20 104.0 84 59.5
BolC9t58349H Brassica oleracea HOM05D000055 ORTHO05D003950 4.2e-20 104.0 84 59.5
AT5G21222 Arabidopsis thaliana HOM05D000055 ORTHO05D003950 7.1e-20 103.2 74 66.2
CARHR191690 Cardamine hirsuta HOM05D000055 ORTHO05D003950 7.1e-20 103.2 74 64.9
CDE02G3880 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 7.1e-20 103.2 123 47.2
A10p18880 Brassica napus HOM05D000055 ORTHO05D003950 9.3e-20 102.8 86 58.1
BraA10t43967Z Brassica rapa HOM05D000055 ORTHO05D003950 9.3e-20 102.8 86 58.1
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 9.3e-20 102.8 92 57.6
Thhalv10012659m.g Eutrema salsugineum HOM05D000055 ORTHO05D003950 9.3e-20 102.8 84 58.3
AL6G32800 Arabidopsis lyrata HOM05D000055 ORTHO05D003950 1.2e-19 102.4 74 64.9
Carub.0006s1949 Capsella rubella HOM05D000055 ORTHO05D003950 1.2e-19 102.4 74 64.9
Ciclev10007728m.g Citrus clementina HOM05D003689 ORTHO05D003950 1.2e-19 102.4 81 64.2
Sc18g0001340 Simmondsia chinensis HOM05D003689 ORTHO05D003950 1.2e-19 102.4 70 71.4
FAN15G3321 Fragaria x ananassa HOM05D003689 ORTHO05D003950 2.1e-19 101.7 597 58.6
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.7e-19 101.3 86 61.6
Potri.018G037200 Populus trichocarpa HOM05D003689 ORTHO05D003950 2.7e-19 101.3 100 54.0
Aqoxy7G03846 Aquilegia oxysepala HOM05D003689 ORTHO05D003950 4.6e-19 100.5 80 63.8
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 4.6e-19 100.5 109 49.5
Manes.16G066100 Manihot esculenta HOM05D003689 ORTHO05D003950 4.6e-19 100.5 121 47.9
THA.LOC104811116 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 6.0e-19 100.1 113 49.6
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 7.8e-19 99.8 113 46.9
CANSAT56G1603 Cannabis sativa HOM05D003689 ORTHO05D003950 7.8e-19 99.8 95 54.7
CANSAT56G4471 Cannabis sativa HOM05D003689 ORTHO05D003950 7.8e-19 99.8 95 54.7
Manes.03G021600 Manihot esculenta HOM05D003689 ORTHO05D003950 1.0e-18 99.4 76 63.2
BcaC04g23586 Brassica carinata HOM05D003689 ORTHO05D003950 1.7e-18 98.6 112 46.4
C09p06740 Brassica napus HOM05D003689 ORTHO05D003950 1.7e-18 98.6 112 48.2
BolC9t53595H Brassica oleracea HOM05D003689 ORTHO05D003950 1.7e-18 98.6 112 48.2
FAN23G2385 Fragaria x ananassa HOM05D003689 ORTHO05D003950 1.7e-18 98.6 291 63.6
Oeu002241.1 Olea europaea HOM05D003689 ORTHO05D003950 1.7e-18 98.6 55 83.6
A09p06120 Brassica napus HOM05D003689 ORTHO05D003950 2.3e-18 98.2 112 48.2
MELO3C003585.2 Cucumis melo HOM05D003689 ORTHO05D003950 3.0e-18 97.8 89 57.3
Lsat_1_v5_gn_8_95421 Lactuca sativa HOM05D003689 ORTHO05D003950 3.0e-18 97.8 119 50.4
TWI63G0545 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 3.0e-18 97.8 70 64.3
Nitab4.5_0003338g0050 Nicotiana tabacum HOM05D003689 ORTHO05D003950 3.9e-18 97.4 104 51.0
Glyma.14G141800 Glycine max HOM05D003689 ORTHO05D003950 5.1e-18 97.1 118 48.3
Cc00_g17700 Coffea canephora HOM05D003689 ORTHO05D003950 6.6e-18 96.7 120 49.2
DCAR_012069 Daucus carota HOM05D001279 ORTHO05D001636 6.6e-18 96.7 55 85.5
Nitab4.5_0000052g0100 Nicotiana tabacum HOM05D003689 ORTHO05D003950 6.6e-18 96.7 106 51.9
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 1.1e-17 95.9 83 56.6
BraA09t36253Z Brassica rapa HOM05D003689 ORTHO05D003950 1.1e-17 95.9 109 47.7
Sabra18G0038000 Salix brachista HOM05D003689 ORTHO05D003950 1.5e-17 95.5 95 52.6
THA.LOC104799204 Tarenaya hassleriana HOM05D003689 ORTHO05D003950 1.5e-17 95.5 74 62.2
arahy.Tifrunner.gnm1.ann1.3U27PV Arachis hypogaea HOM05D003689 ORTHO05D003950 1.9e-17 95.1 67 67.2
arahy.Tifrunner.gnm1.ann1.SBHH31 Arachis hypogaea HOM05D003689 ORTHO05D003950 1.9e-17 95.1 67 67.2
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 1.9e-17 95.1 77 58.4
Peaxi162Scf00523g00624 Petunia axillaris HOM05D003689 ORTHO05D003950 1.9e-17 95.1 104 51.9
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 2.5e-17 94.7 60 76.7
Actinidia31220 Actinidia chinensis HOM05D003689 ORTHO05D003950 3.3e-17 94.4 129 45.0
Hund09215 Selenicereus undatus HOM05D003689 ORTHO05D003950 3.3e-17 94.4 95 53.7
AL6G37510 Arabidopsis lyrata HOM05D003689 ORTHO05D003950 5.6e-17 93.6 97 49.5
DCAR_004497 Daucus carota HOM05D003689 ORTHO05D003950 5.6e-17 93.6 74 62.2
arahy.Tifrunner.gnm1.ann1.EDC6ME Arachis hypogaea HOM05D003689 ORTHO05D003950 7.3e-17 93.2 67 65.7
arahy.Tifrunner.gnm1.ann1.K2CPZ4 Arachis hypogaea HOM05D003689 ORTHO05D003950 7.3e-17 93.2 67 65.7
Ca_12812_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 9.6e-17 92.8 96 51.0
MBI04_g29969_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 9.6e-17 92.8 77 59.7
PGSC0003DMG400014513 Solanum tuberosum HOM05D003689 ORTHO05D003950 9.6e-17 92.8 95 50.5
Thhalv10003915m.g Eutrema salsugineum HOM05D003689 ORTHO05D003950 1.3e-16 92.4 85 50.6
Sopen08g022090 Solanum pennellii HOM05D003689 ORTHO05D003950 1.3e-16 92.4 95 50.5
TWI34G0694 Tripterygium wilfordii HOM05D003689 ORTHO05D003950 1.3e-16 92.4 96 52.1
BcaB06g28622 Brassica carinata HOM05D000888 ORTHO05D000740 1.6e-16 92.0 74 59.5
Solyc08g068230.4 Solanum lycopersicum HOM05D003689 ORTHO05D003950 1.6e-16 92.0 95 50.5
Aa31LG1G13560 Aethionema arabicum HOM05D000055 ORTHO05D003950 3.6e-16 90.9 72 58.3
Sc23g0005900 Simmondsia chinensis HOM05D003689 ORTHO05D003950 4.8e-16 90.5 73 61.6
arahy.Tifrunner.gnm1.ann1.WWE821 Arachis hypogaea HOM05D003689 ORTHO05D003950 8.1e-16 89.7 82 56.1
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.1e-15 89.4 96 51.0
Atru.chr7.2161 Acer truncatum HOM05D003689 ORTHO05D003950 1.4e-15 89.0 67 64.2
Hma1.2p1_0140F.1_g063530 Hydrangea macrophylla HOM05D003689 ORTHO05D003950 1.8e-15 88.6 67 65.7
arahy.Tifrunner.gnm1.ann1.6C9669 Arachis hypogaea HOM05D003689 ORTHO05D003950 2.4e-15 88.2 82 54.9
Lalb_Chr14g0362401 Lupinus albus HOM05D003689 ORTHO05D003950 2.4e-15 88.2 97 48.5
MBI04_g43860_MAGBIO Magnolia biondii HOM05D003689 ORTHO05D003950 5.3e-15 87.0 143 39.2
ECA238G3870 Erigeron canadensis HOM05D003689 ORTHO05D009814 6.9e-15 86.7 79 60.8
MSTRG.14008 Avicennia marina HOM05D003689 ORTHO05D003950 9.0e-15 86.3 71 56.3
Nn8g39148 Nelumbo nucifera HOM05D003689 ORTHO05D003950 1.5e-14 85.5 296 64.2
ECA234G0433 Erigeron canadensis HOM05D003689 ORTHO05D003950 2.6e-14 84.7 42 92.9
EL10Ac2g04074 Beta vulgaris HOM05D003689 ORTHO05D003950 3.4e-14 84.3 74 55.4
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 4.5e-14 84.0 79 51.9
PGR102G1523 Punica granatum HOM05D003689 ORTHO05D003950 1.3e-13 82.4 74 56.8
SGA_v2.0_scaffold163G38088 Striga asiatica HOM05D003689 ORTHO05D003950 1.3e-13 82.4 74 50.0
Ah.16g105250 Amaranthus hybridus HOM05D003689 ORTHO05D003950 2.2e-13 81.6 74 51.4
Ca_17333_v3 Cicer arietinum L. HOM05D003689 ORTHO05D003950 2.2e-13 81.6 55 72.7
Psat0s586g0040 Pisum sativum HOM05D003689 ORTHO05D003950 6.4e-13 80.1 100 50.0
EL10Ac8g18475 Beta vulgaris HOM05D003689 ORTHO05D003950 1.1e-12 79.3 44 79.5
AUR62009331 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.1e-12 79.3 74 50.0
AUR62023017 Chenopodium quinoa HOM05D003689 ORTHO05D003950 1.1e-12 79.3 74 50.0
CAN.G797.4 Capsicum annuum HOM05D003689 ORTHO05D003950 2.4e-12 78.2 88 51.1
Sed0002455 Sechium edule HOM05D003689 ORTHO05D003950 3.2e-12 77.8 63 61.9
Duzib187G1779 Durio zibethinus HOM05D003689 ORTHO05D003950 5.4e-12 77.0 57 61.4
Medtr8g103480 Medicago truncatula HOM05D003689 ORTHO05D003950 7.1e-12 76.6 50 70.0
MD15G1097900 Malus domestica HOM05D003689 ORTHO05D003950 1.2e-11 75.9 44 79.5
TAR624G0021 Trochodendron aralioides HOM05D003689 ORTHO05D003950 1.2e-11 75.9 39 87.2
AUR62010979 Chenopodium quinoa HOM05D003689 ORTHO05D003950 2.7e-11 74.7 69 55.1
Os01g0228400 Oryza sativa ssp. japonica HOM05D003689 ORTHO05D003950 2.7e-11 74.7 140 35.0
Ah.14g082150 Amaranthus hybridus HOM05D003689 ORTHO05D003950 3.5e-11 74.3 52 67.3
MD02G1045100 Malus domestica HOM05D003689 ORTHO05D003950 3.5e-11 74.3 67 53.7
AUR62021489 Chenopodium quinoa HOM05D003689 ORTHO05D003950 6.0e-11 73.6 69 53.6
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 7.9e-11 73.2 55 58.2
Eucgr.C02891 Eucalyptus grandis HOM05D003689 ORTHO05D003950 7.9e-11 73.2 56 58.9
EL10Ac8g18468 Beta vulgaris HOM05D003689 ORTHO05D003950 1.0e-10 72.8 53 69.8
EL10Ac8g18473 Beta vulgaris HOM05D003689 ORTHO05D003950 1.3e-10 72.4 52 67.3
EL10Ac8g18479 Beta vulgaris HOM05D003689 ORTHO05D003950 1.3e-10 72.4 51 66.7
arahy.Tifrunner.gnm1.ann1.Z43HYI Arachis hypogaea HOM05D003689 ORTHO05D003950 3.9e-10 70.9 51 66.7
Cpa.g.sc78.81 Carica papaya HOM05D003689 ORTHO05D003950 1.1e-09 69.3 293 60.4
Lj8C603T16 Lonicera japonica HOM05D003689 ORTHO05D003950 4.3e-09 67.4 39 74.4
PGR044G1205 Punica granatum HOM05D003689 ORTHO05D003950 5.6e-09 67.0 49 61.2
SGA_v2.0_scaffold163G38089 Striga asiatica HOM05D003689 ORTHO05D003950 5.6e-09 67.0 74 43.2
EL10Ac8g18465 Beta vulgaris HOM05D003689 ORTHO05D003950 9.6e-09 66.2 49 65.3
EL10Ac8g18466 Beta vulgaris HOM05D003689 ORTHO05D003950 9.6e-09 66.2 49 65.3
MD02G1045000 Malus domestica HOM05D003689 ORTHO05D003950 9.0e-07 59.7 42 61.9
Cpa.g.sc23.95 Carica papaya HOM05D003689 ORTHO05D003950 3.4e-06 57.8 142 32.4


User provided reference genes

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