Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.2e-209 733.0 385 100.0
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 2.6e-132 476.1 309 81.6
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.7e-131 472.2 308 82.8
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 3.1e-130 469.2 310 80.6
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.7e-128 463.4 314 80.3
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.9e-127 459.9 310 77.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 2.3e-125 453.0 310 78.1
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 6.8e-125 451.4 309 78.3
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 3.4e-124 449.1 309 78.0
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 7.5e-124 448.0 309 77.7
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 9.8e-124 447.6 309 77.7
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.3e-123 447.2 314 74.8
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 2.8e-123 446.0 358 69.6
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 4.8e-123 445.3 309 77.3
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 2.4e-122 443.0 314 75.2
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 3.1e-122 442.6 309 75.4
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 9.1e-122 441.0 309 77.3
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 1.2e-121 440.7 310 75.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.6e-121 440.3 310 75.5
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 2.7e-121 439.5 360 69.2
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 3.5e-121 439.1 310 74.8
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.7e-120 436.8 309 74.8
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.7e-120 436.8 359 67.7
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 2.9e-120 436.0 358 69.3
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 2.9e-120 436.0 359 68.0
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 3.8e-120 435.6 310 74.5
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 3.8e-120 435.6 314 73.6
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 3.8e-120 435.6 309 74.1
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 6.5e-120 434.9 310 74.2
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 6.5e-120 434.9 310 73.9
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 6.5e-120 434.9 359 68.2
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 6.5e-120 434.9 314 73.2
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 8.6e-120 434.5 309 75.4
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 8.6e-120 434.5 309 74.4
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.1e-119 434.1 314 73.2
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 1.9e-119 433.3 314 72.9
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 2.5e-119 433.0 309 74.8
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.2e-119 432.2 314 73.2
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 4.2e-119 432.2 358 66.5
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 5.5e-119 431.8 359 67.4
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 5.5e-119 431.8 309 73.5
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 7.2e-119 431.4 309 73.1
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 9.5e-119 431.0 309 73.8
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 9.5e-119 431.0 309 73.8
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 9.5e-119 431.0 309 73.8
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 1.6e-118 430.3 308 73.7
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.6e-118 430.3 310 73.9
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.6e-118 430.3 309 72.8
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 2.1e-118 429.9 309 73.1
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.8e-118 429.5 330 71.5
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 2.8e-118 429.5 358 66.5
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 3.6e-118 429.1 309 74.1
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 3.6e-118 429.1 309 73.1
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 3.6e-118 429.1 309 73.1
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 6.1e-118 428.3 314 72.6
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 6.1e-118 428.3 314 72.6
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 6.1e-118 428.3 309 74.1
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 8.0e-118 427.9 314 72.6
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 1.0e-117 427.6 310 74.2
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.4e-117 427.2 310 73.2
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 1.4e-117 427.2 314 72.6
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.8e-117 426.8 309 71.8
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.8e-117 426.8 309 71.8
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 2.3e-117 426.4 311 73.3
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.3e-117 426.4 309 73.1
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.0e-117 426.0 309 72.2
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 4.0e-117 425.6 309 72.2
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 6.8e-117 424.9 309 72.2
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 8.8e-117 424.5 361 67.3
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 8.8e-117 424.5 309 72.2
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 2.0e-116 423.3 309 72.5
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 2.6e-116 422.9 310 71.3
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 3.4e-116 422.5 309 72.2
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.7e-116 421.8 326 72.4
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 2.8e-115 419.5 309 73.5
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 4.9e-115 418.7 309 71.8
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 6.3e-115 418.3 360 65.0
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 1.1e-114 417.5 358 64.8
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 1.4e-114 417.2 310 72.9
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.8e-114 416.8 309 71.8
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 2.4e-114 416.4 358 64.8
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 3.1e-114 416.0 382 63.1
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 7.0e-114 414.8 310 73.5
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 9.2e-114 414.5 359 63.8
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.2e-113 414.1 309 70.9
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 2.7e-113 412.9 310 70.0
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.7e-113 412.9 309 71.2
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 5.9e-113 411.8 359 64.1
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 7.8e-113 411.4 359 63.8
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 7.8e-113 411.4 310 70.6
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 1.0e-112 411.0 309 69.6
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.9e-112 409.5 359 63.2
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.9e-112 409.5 309 70.2
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 3.8e-112 409.1 359 63.0
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 3.8e-112 409.1 309 72.5
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.8e-112 409.1 358 63.1
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 8.6e-112 407.9 310 68.7
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 1.1e-111 407.5 310 69.7
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.5e-111 407.1 309 69.6
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 1.5e-111 407.1 309 69.9
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 1.5e-111 407.1 314 70.1
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 1.9e-111 406.8 310 69.4
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.9e-111 406.8 310 69.4
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.9e-111 406.8 310 69.4
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.3e-111 405.6 310 68.7
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 7.3e-111 404.8 310 69.0
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 3.6e-110 402.5 315 68.3
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 3.6e-110 402.5 309 68.6
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 8.0e-110 401.4 315 67.9
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 1.0e-109 401.0 315 68.3
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.6e-108 396.4 358 64.2
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 4.4e-108 395.6 358 64.0
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 2.4e-106 389.8 358 63.4
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 5.4e-106 388.7 315 67.0
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 1.6e-105 387.1 359 61.6
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 3.9e-104 382.5 314 66.9
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 8.0e-102 374.8 314 66.2
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.2e-100 370.9 314 64.3
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 6.4e-99 365.2 311 64.3
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.0e-97 360.1 309 66.0
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.0e-96 357.8 325 61.8
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.3e-95 352.8 240 80.0
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 3.3e-95 352.8 312 64.1
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.8e-93 347.1 263 68.4
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 3.1e-93 346.3 313 62.0
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 5.2e-93 345.5 315 62.2
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 6.0e-89 332.0 294 61.6
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.1e-88 328.9 323 57.3
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.1e-71 274.6 295 57.6
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 3.3e-71 273.1 359 48.7
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 6.7e-64 248.8 309 51.5
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 4.0e-53 213.0 318 41.2
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 1.2e-52 211.5 137 79.6
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 2.7e-49 200.3 169 63.3
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.2e-33 148.3 332 38.3
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.2e-27 127.5 79 81.0
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 8.5e-27 125.6 78 80.8
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 9.7e-23 112.1 158 43.7
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.8e-22 110.5 217 39.2
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 9.4e-18 95.5 85 62.4
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 3.3e-15 87.0 165 38.8
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 1.2e-12 78.6 46 76.1
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.9e-11 73.9 40 85.0
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 1.6e-09 68.2 82 41.5
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.7e-09 67.4 65 58.5
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 8.0e-09 65.9 146 37.7
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 6.8e-08 62.8 33 78.8
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 1.5e-07 61.6 68 54.4
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 1.5e-07 61.6 71 52.1
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 4.4e-07 60.1 60 55.0
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 9.8e-07 58.9 71 50.7


User provided reference genes

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