Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016155 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 8.5e-191 670.2 353 100.0
CSS0046328 Camellia sinensis var. sinensis HOM05D006765 ORTHO05D008554 8.8e-188 660.2 353 98.0
Actinidia03654 Actinidia chinensis HOM05D006765 ORTHO05D008554 7.8e-120 434.5 352 67.6
Dinv40889 Davidia involucrata HOM05D006765 ORTHO05D008554 1.9e-110 403.3 393 58.3
Rhsim04G0010100 Rhododendron simsii HOM05D006765 ORTHO05D008554 4.6e-96 355.5 497 45.5
GSVIVG01014751001 Vitis vinifera HOM05D006765 ORTHO05D008554 6.5e-90 335.1 356 54.2
Lj1A895T73 Lonicera japonica HOM05D006765 ORTHO05D008554 1.4e-89 334.0 358 56.1
TWI38G1422 Tripterygium wilfordii HOM05D006765 ORTHO05D008554 2.6e-83 313.2 355 53.0
Prupe.6G029100 Prunus persica HOM05D006765 ORTHO05D008554 5.9e-83 312.0 363 51.0
QL08p002606 Quercus lobata HOM05D006765 ORTHO05D008554 2.9e-82 309.7 357 52.7
Manes.01G004100 Manihot esculenta HOM05D006765 ORTHO05D008554 1.1e-81 307.8 357 53.2
FvH4_3g42180 Fragaria vesca HOM05D006765 ORTHO05D008554 1.2e-80 304.3 364 51.4
TAR629G2312 Trochodendron aralioides HOM05D006765 ORTHO05D008554 1.6e-80 303.9 363 53.2
FAN11G3685 Fragaria x ananassa HOM05D006765 ORTHO05D008554 3.6e-80 302.8 364 51.6
vmacro09619 Vaccinium macrocarpon HOM05D006765 ORTHO05D008554 6.1e-80 302.0 549 39.2
Gohir.A04G004500 Gossypium hirsutum HOM05D006765 ORTHO05D008554 3.0e-79 299.7 357 51.5
RcHm_v2.0_Chr5g0075451 Rosa chinensis HOM05D006765 ORTHO05D008554 3.0e-79 299.7 364 51.4
Gorai.009G452100 Gossypium raimondii HOM05D006765 ORTHO05D008554 1.1e-78 297.7 357 51.0
Duzib213G0912 Durio zibethinus HOM05D006765 ORTHO05D008554 2.6e-78 296.6 359 51.0
Ciclev10008671m.g Citrus clementina HOM05D006765 ORTHO05D008554 7.4e-78 295.0 399 46.1
Cpa.g.sc12.101 Carica papaya HOM05D006765 ORTHO05D008554 1.3e-77 294.3 347 51.6
Gohir.D05G385400 Gossypium hirsutum HOM05D006765 ORTHO05D008554 1.3e-77 294.3 357 51.0
Oeu005464.1 Olea europaea HOM05D006765 ORTHO05D008554 1.4e-76 290.8 356 48.9
Cfa021898 Carpinus fangiana HOM05D006765 ORTHO05D008554 5.3e-76 288.9 351 51.3
COL.COLO4_07747 Corchorus olitorius HOM05D006765 ORTHO05D008554 2.6e-75 286.6 359 49.9
Eucgr.F02021 Eucalyptus grandis HOM05D006765 ORTHO05D008554 1.3e-74 284.3 354 48.9
FAN25G2031 Fragaria x ananassa HOM05D006765 ORTHO05D008554 1.7e-74 283.9 378 48.7
Sabra16G0317200 Salix brachista HOM05D006765 ORTHO05D008554 2.9e-74 283.1 376 45.5
Potri.001G467400 Populus trichocarpa HOM05D006765 ORTHO05D008554 2.1e-72 276.9 390 44.9
CiPaw.11G207500 Carya illinoinensis HOM05D006765 ORTHO05D008554 3.9e-71 272.7 281 59.8
FAN21G2411 Fragaria x ananassa HOM05D006765 ORTHO05D008554 5.3e-68 262.3 383 46.5
SGA_v2.0_scaffold168G38579 Striga asiatica HOM05D006765 ORTHO05D008554 1.6e-67 260.8 362 46.1
CsaV3_7G021520 Cucumis sativus L. HOM05D006765 ORTHO05D008554 1.0e-66 258.1 357 49.9
Sc03g0011660 Simmondsia chinensis HOM05D006765 ORTHO05D008554 1.7e-66 257.3 224 59.4
MELO3C013197.2 Cucumis melo HOM05D006765 ORTHO05D008554 3.8e-66 256.1 358 48.0
ClCG09G021580 Citrullus lanatus HOM05D006765 ORTHO05D008554 6.5e-66 255.4 372 48.4
FAN16G0764 Fragaria x ananassa HOM05D006765 ORTHO05D008554 8.5e-66 255.0 265 58.1
Lsat_1_v5_gn_7_114860 Lactuca sativa HOM05D006765 ORTHO05D008554 8.5e-66 255.0 362 43.4
Hma1.2p1_1094F.1_g256340 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 1.1e-65 254.6 178 72.5
MBI15_g19869_MAGBIO Magnolia biondii HOM05D006765 ORTHO05D008554 2.1e-64 250.4 341 46.6
PGR083G0751 Punica granatum HOM05D006765 ORTHO05D008554 2.3e-63 246.9 365 45.8
Haze_09874 Corylus avellana HOM05D006765 ORTHO05D008554 3.0e-63 246.5 391 43.2
Nn1g07719 Nelumbo nucifera HOM05D006765 ORTHO05D008554 1.2e-62 244.6 363 45.7
Migut.M01623 Erythranthe guttata HOM05D006765 ORTHO05D008554 2.0e-62 243.8 358 43.0
CANSAT11G0072 Cannabis sativa HOM05D006765 ORTHO05D008554 4.4e-62 242.7 356 44.9
Sopen07g034060 Solanum pennellii HOM05D006765 ORTHO05D008554 4.4e-62 242.7 353 43.1
PGSC0003DMG400022157 Solanum tuberosum HOM05D006765 ORTHO05D008554 5.7e-62 242.3 352 42.9
Solyc07g065870.3 Solanum lycopersicum HOM05D006765 ORTHO05D008554 7.5e-62 241.9 354 42.7
CAN.G623.40 Capsicum annuum HOM05D006765 ORTHO05D008554 9.7e-62 241.5 356 42.7
Nitab4.5_0003130g0010 Nicotiana tabacum HOM05D006765 ORTHO05D008554 3.7e-61 239.6 352 43.2
Cc05_g15360 Coffea canephora HOM05D006765 ORTHO05D008554 1.4e-60 237.7 263 52.9
Sed0017860 Sechium edule HOM05D006765 ORTHO05D008554 4.1e-60 236.1 330 45.8
Ah.08g214160 Amaranthus hybridus HOM05D006765 ORTHO05D008554 7.0e-60 235.3 374 41.7
SalBow8G5524 Salvia bowleyana HOM05D006765 ORTHO05D008554 1.6e-59 234.2 358 42.2
Carub.0003s1262 Capsella rubella HOM05D006765 ORTHO05D008554 2.0e-59 233.8 350 41.1
CARHR087860 Cardamine hirsuta HOM05D006765 ORTHO05D008554 3.5e-59 233.0 349 42.7
Aqoxy2G01345 Aquilegia oxysepala HOM05D006765 ORTHO05D008554 4.5e-59 232.6 361 44.3
HanXRQChr15g0488021 Helianthus annuus HOM05D006765 ORTHO05D008554 4.5e-59 232.6 382 42.7
LjContig00081g0022778 Lotus japonicus HOM05D006765 ORTHO05D008554 1.0e-58 231.5 359 44.3
Glyma.02G302700 Glycine max HOM05D006765 ORTHO05D008554 3.8e-58 229.6 354 44.4
Peaxi162Scf00232g00025 Petunia axillaris HOM05D006765 ORTHO05D008554 5.0e-58 229.2 353 42.8
arahy.Tifrunner.gnm1.ann1.C7HE0M Arachis hypogaea HOM05D006765 ORTHO05D008554 6.5e-58 228.8 204 58.3
EL10Ac4g07518 Beta vulgaris HOM05D006765 ORTHO05D008554 2.5e-57 226.9 393 39.9
Glyma.14G011300 Glycine max HOM05D006765 ORTHO05D008554 2.5e-57 226.9 354 44.1
Sp3g11440 Schrenkiella parvula HOM05D006765 ORTHO05D008554 9.4e-57 224.9 375 38.7
ECA236G1773 Erigeron canadensis HOM05D006765 ORTHO05D008554 2.7e-56 223.4 367 41.7
Thhalv10020892m.g Eutrema salsugineum HOM05D006765 ORTHO05D008554 2.7e-56 223.4 261 48.3
AL3G25050 Arabidopsis lyrata HOM05D006765 ORTHO05D008554 6.1e-56 222.2 374 38.5
Ca_06420_v3 Cicer arietinum L. HOM05D006765 ORTHO05D008554 1.0e-55 221.5 270 48.9
Phvul.008G281600 Phaseolus vulgaris HOM05D006765 ORTHO05D008554 1.0e-55 221.5 192 60.9
Aa31LG8G470 Aethionema arabicum HOM05D006765 ORTHO05D008554 5.2e-55 219.2 323 39.6
THA.LOC104801913 Tarenaya hassleriana HOM05D006765 ORTHO05D008554 6.8e-55 218.8 352 41.2
TPR.G1253 Trifolium pratense HOM05D006765 ORTHO05D008554 6.8e-55 218.8 229 54.1
AT3G13226 Arabidopsis thaliana HOM05D006765 ORTHO05D008554 2.6e-54 216.9 374 38.0
Hund01854 Selenicereus undatus HOM05D006765 ORTHO05D008554 9.8e-54 214.9 410 37.3
AUR62017157 Chenopodium quinoa HOM05D006765 ORTHO05D008554 1.7e-53 214.2 379 40.6
BcaB04g21007 Brassica carinata HOM05D006765 ORTHO05D008554 2.2e-53 213.8 385 37.9
Medtr5g096560 Medicago truncatula HOM05D006765 ORTHO05D008554 2.2e-53 213.8 229 52.8
BcaC09g48297 Brassica carinata HOM05D006765 ORTHO05D008554 3.7e-53 213.0 366 38.5
Psat2g006160 Pisum sativum HOM05D006765 ORTHO05D008554 6.3e-53 212.2 362 41.7
BraA01t04065Z Brassica rapa HOM05D006765 ORTHO05D008554 8.3e-53 211.8 383 37.3
Lalb_Chr04g0247731 Lupinus albus HOM05D006765 ORTHO05D008554 8.3e-53 211.8 164 64.6
DCAR_013261 Daucus carota HOM05D006765 ORTHO05D008554 3.1e-52 209.9 337 42.1
arahy.Tifrunner.gnm1.ann1.8KGR77 Arachis hypogaea HOM05D006765 ORTHO05D008554 5.4e-52 209.1 398 38.2
C01p51810 Brassica napus HOM05D006765 ORTHO05D008554 5.4e-52 209.1 366 38.5
Zm00001eb433160 Zea mays HOM05D006765 ORTHO05D008554 5.4e-52 209.1 166 59.6
A01p40290 Brassica napus HOM05D006765 ORTHO05D008554 7.0e-52 208.8 373 38.3
BolC1t05128H Brassica oleracea HOM05D006765 ORTHO05D008554 7.0e-52 208.8 370 38.1
Nitab4.5_0000152g0290 Nicotiana tabacum HOM05D006765 ORTHO05D008554 2.0e-51 207.2 333 41.7
Prupe.6G082900 Prunus persica HOM05D006765 ORTHO05D008554 3.5e-51 206.5 169 64.5
ATR0751G181 Amborella trichopoda HOM05D006765 ORTHO05D008554 1.7e-50 204.1 383 39.4
AUR62035647 Chenopodium quinoa HOM05D006765 ORTHO05D008554 1.7e-50 204.1 221 52.0
Os04g0667900 Oryza sativa ssp. japonica HOM05D006765 ORTHO05D008554 1.1e-49 201.4 169 56.2
VMungo0647G1474 Vigna mungo HOM05D006765 ORTHO05D008554 9.5e-49 198.4 413 38.0
PSO675G8178 Papaver somniferum HOM05D006765 ORTHO05D008554 2.6e-46 190.3 195 53.3
MD03G1037000 Malus domestica HOM05D006765 ORTHO05D008554 1.4e-44 184.5 121 76.9
PSO541G0333 Papaver somniferum HOM05D006765 ORTHO05D008554 7.0e-44 182.2 388 36.3
Prupe.6G029900 Prunus persica HOM05D006765 ORTHO05D008554 2.5e-41 173.7 163 59.5
Hma1.2p1_1094F.1_g256330 Hydrangea macrophylla HOM05D006765 ORTHO05D008554 1.0e-39 168.3 236 47.5
Thecc.07G007200 Theobroma cacao HOM05D006765 ORTHO05D008554 3.7e-37 159.8 263 41.1
Pp3c19_18350 Physcomitrium patens HOM05D006765 ORTHO05D008554 7.3e-33 145.6 175 42.3
CDE04G0216 Ceratophyllum demersum HOM05D006765 ORTHO05D008554 2.0e-30 137.5 135 49.6
Sed0007098 Sechium edule HOM05D006765 ORTHO05D008554 3.7e-29 133.3 258 39.5
SEGI_27535 Sequoiadendron giganteum HOM05D006765 ORTHO05D008554 8.3e-29 132.1 128 47.7
SMO115G0196 Selaginella moellendorffii HOM05D006765 ORTHO05D008554 3.6e-24 116.7 199 33.2
Psat2g006040 Pisum sativum HOM05D006765 ORTHO05D008554 8.1e-24 115.5 96 58.3
Mapoly0047s0103 Marchantia polymorpha HOM05D006765 ORTHO05D008554 1.5e-22 111.3 169 35.5
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 3.1e-15 87.0 85 45.9
MCO16G170 Micromonas commoda HOM05D006765 ORTHO05D008554 1.7e-13 81.3 188 28.2
MSTRG.15811 Avicennia marina HOM05D006765 ORTHO05D008554 3.5e-11 73.6 209 32.5
Manes.05G203050 Manihot esculenta HOM05D006765 ORTHO05D008554 2.1e-08 64.3 64 54.7
MD03G1037100 Malus domestica HOM05D006765 ORTHO05D008554 1.8e-07 61.2 276 28.6
Cc00_g31880 Coffea canephora HOM05D006765 ORTHO05D008554 1.5e-06 58.2 133 34.6


User provided reference genes

Program Settings