Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 0.0e+00 2608.6 1510 100.0
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 4.9e-296 1021.9 1241 51.6
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.5e-294 1015.8 1228 51.7
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 3.8e-280 969.1 1209 52.3
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 1.1e-252 877.9 863 58.1
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 9.1e-250 868.2 1252 45.7
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 3.6e-246 856.3 1516 43.7
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.4e-245 854.4 1189 45.9
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.4e-245 854.4 1142 46.8
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 9.1e-242 841.6 1233 44.9
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 3.4e-236 823.2 1235 46.1
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 1.8e-226 790.8 1235 43.1
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 2.9e-224 783.5 1233 44.3
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 4.4e-220 769.6 1242 42.4
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 1.3e-208 731.5 1114 44.1
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.4e-205 721.5 1369 40.5
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.4e-202 711.4 1204 39.9
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.9e-202 711.1 1204 39.9
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 7.1e-202 709.1 1327 37.8
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.0e-200 705.3 1105 41.0
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.5e-199 701.4 1230 39.2
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.5e-199 700.7 1227 39.5
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 7.3e-199 699.1 866 46.3
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 6.2e-198 696.0 1110 43.2
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 3.4e-196 690.3 1231 38.8
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.7e-187 661.4 886 46.3
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.1e-181 642.1 894 44.2
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 1.1e-178 632.1 1232 37.3
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 3.3e-175 620.5 1226 38.8
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 2.6e-172 610.9 1099 39.2
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 9.9e-172 609.0 1234 37.0
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 2.9e-171 607.4 1219 41.8
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 4.2e-170 603.6 1178 39.0
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 9.3e-170 602.4 1235 36.1
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 3.0e-168 597.4 917 43.5
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.6e-166 591.7 1217 38.0
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 1.8e-165 588.2 1093 38.9
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.8e-165 588.2 1051 39.6
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.8e-165 588.2 1228 38.1
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 1.8e-165 588.2 729 48.7
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 5.3e-165 586.6 1530 36.2
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.7e-163 581.6 1070 38.7
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.1e-162 578.9 1053 38.9
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.9e-162 578.2 1049 38.3
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.5e-162 577.8 1055 39.1
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 2.5e-162 577.8 1179 37.1
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 4.2e-162 577.0 1524 35.7
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 2.8e-158 564.3 1060 37.9
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 1.2e-153 548.9 1295 35.6
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 2.8e-150 537.7 1185 34.9
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.8e-150 537.0 865 40.2
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 7.2e-146 523.1 1112 34.7
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 6.1e-145 520.0 1145 36.2
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 3.0e-144 517.7 1106 35.1
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.3e-143 514.2 1119 34.9
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 1.3e-142 512.3 1031 38.6
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 9.4e-138 496.1 983 36.1
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 1.1e-133 482.6 1099 34.4
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 2.4e-133 481.5 1128 33.6
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 4.1e-133 480.7 966 36.0
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 4.5e-132 477.2 1045 34.4
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.7e-131 475.3 1201 32.6
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 9.4e-130 469.5 1116 38.0
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.6e-129 468.8 1139 33.3
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 1.4e-128 465.7 1110 33.2
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 5.7e-127 460.3 1217 33.9
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 1.4e-125 455.7 979 35.8
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 2.4e-125 454.9 1122 32.6
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 1.6e-124 452.2 1142 33.9
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 5.9e-124 450.3 1093 33.2
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 3.2e-122 444.5 1123 32.8
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 2.1e-121 441.8 1134 33.2
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 8.3e-118 429.9 1133 33.0
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 1.2e-116 426.0 1110 32.4
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 1.6e-116 425.6 1172 32.5
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 2.7e-116 424.9 1007 34.1
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 1.2e-113 416.0 832 34.9
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 2.1e-113 415.2 1304 31.7
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 3.6e-113 414.5 834 36.9
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.6e-111 408.3 1200 29.6
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 7.0e-109 400.2 1200 29.5
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 5.9e-108 397.1 1118 31.5
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 7.7e-108 396.7 1116 30.6
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 3.8e-107 394.4 1120 31.0
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 2.1e-105 388.7 1076 31.6
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 7.5e-103 380.2 1107 29.4
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 2.3e-99 368.6 1086 29.9
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 8.6e-99 366.7 1106 29.8
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 2.8e-97 361.7 1098 29.8
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 3.4e-95 354.8 1125 29.5
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 6.4e-94 350.5 1127 28.0
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 3.2e-93 348.2 1117 29.6
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 1.9e-90 339.0 1113 29.5
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 4.3e-90 337.8 1118 29.4
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 2.8e-89 335.1 1116 29.3
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.4e-88 332.8 1112 29.1
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.5e-87 329.3 1113 29.2
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 1.2e-79 303.1 886 29.1
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.4e-77 296.2 1143 27.2
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 1.6e-76 292.7 1109 27.1
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 6.0e-76 290.8 1121 27.1
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 5.1e-75 287.7 244 63.9
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 2.5e-74 285.4 840 30.6
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 6.0e-68 264.2 814 31.9
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 7.8e-68 263.8 1117 26.1
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.5e-66 258.8 436 38.8
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 9.6e-66 256.9 436 38.5
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 9.6e-66 256.9 436 38.5
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.3e-65 256.5 791 27.9
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 6.4e-62 244.2 649 31.7
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 1.5e-58 233.0 801 28.8
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 2.9e-54 218.8 477 34.0
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 6.2e-49 201.1 173 63.0
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 3.8e-46 191.8 1154 24.5
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.1e-42 180.3 1043 24.4
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 8.2e-41 174.1 272 48.5
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 9.0e-40 170.6 305 35.1
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 1.2e-39 170.2 291 35.7
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 1.9e-37 162.9 491 31.6
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 4.2e-37 161.8 946 23.2
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 4.6e-36 158.3 399 30.8
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 8.5e-30 137.5 342 31.6
CSS0038484 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 4.2e-29 135.2 108 72.2
CSS0031745 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 1.6e-28 133.3 108 72.2
CSS0045402 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 1.6e-28 133.3 108 72.2
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 3.6e-28 132.1 336 31.2
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.4e-27 130.2 342 30.7
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.1e-24 120.6 267 33.3
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 1.6e-20 106.7 141 44.7
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 7.9e-20 104.4 180 37.2
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.8e-19 103.2 159 36.5
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 7.4e-18 97.8 397 38.5
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.2e-17 96.3 275 29.5
CSS0017240 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 1.4e-16 93.6 108 56.5
CSS0002641 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 4.1e-16 92.0 108 55.6
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 5.3e-16 91.7 353 26.3
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 9.1e-16 90.9 123 45.5
CSS0010685 Camellia sinensis var. sinensis HOM05D020260 ORTHO05D022112 5.9e-15 88.2 108 54.6
Lj6g0015855 Lotus japonicus HOM05D005129 ORTHO05D005585 1.6e-12 80.1 212 33.5
DCAR_005756 Daucus carota HOM05D005129 ORTHO05D005585 1.4e-11 77.0 227 30.0
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 2.0e-10 73.2 87 49.4
PSO675G2011 Papaver somniferum HOM05D026995 ORTHO05D005585 2.0e-10 73.2 87 49.4
SEGI_31962 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.3e-09 70.5 221 29.4
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 9.1e-08 64.3 218 46.8
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 1.0e-06 60.8 179 27.4
PSO541G0381 Papaver somniferum HOM05D026995 ORTHO05D005585 1.7e-06 60.1 77 46.8
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 1.7e-06 60.1 83 44.6
Aqoxy2G01760 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 3.8e-06 58.9 81 42.0
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 8.5e-06 57.8 174 27.0


User provided reference genes

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