Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016137 Camellia sinensis var. sinensis HOM05D005065 ORTHO05D005944 3.8e-108 394.8 195 100.0
Dinv41716 Davidia involucrata HOM05D005065 ORTHO05D005944 1.6e-29 133.7 197 49.7
Rhsim06G0094100 Rhododendron simsii HOM05D005065 ORTHO05D005944 4.6e-29 132.1 195 49.7
Actinidia23336 Actinidia chinensis HOM05D005065 ORTHO05D005944 1.7e-28 130.2 138 58.0
Hma1.2p1_0060F.1_g032900 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 8.7e-28 127.9 210 43.3
MSTRG.1526 Avicennia marina HOM05D005065 ORTHO05D005944 2.5e-27 126.3 182 48.4
Hma1.2p1_0937F.1_g239030 Hydrangea macrophylla HOM05D005065 ORTHO05D005944 2.5e-27 126.3 199 47.7
MSTRG.25443 Avicennia marina HOM05D005065 ORTHO05D005944 3.3e-27 125.9 178 44.9
Dinv15081 Davidia involucrata HOM05D005065 ORTHO05D005944 5.6e-27 125.2 193 50.3
Cc00_g13630 Coffea canephora HOM05D005065 ORTHO05D005944 1.6e-26 123.6 219 42.9
Manes.18G101500 Manihot esculenta HOM05D005065 ORTHO05D005944 4.8e-26 122.1 177 45.8
VMungo0720G1099 Vigna mungo HOM05D005065 ORTHO05D005944 4.8e-26 122.1 174 49.4
Rhsim11G0058500 Rhododendron simsii HOM05D005065 ORTHO05D005944 8.1e-26 121.3 193 47.7
Actinidia02576 Actinidia chinensis HOM05D005065 ORTHO05D005944 3.1e-25 119.4 159 50.3
Phvul.007G088700 Phaseolus vulgaris HOM05D005065 ORTHO05D005944 3.1e-25 119.4 174 47.7
Glyma.10G217400 Glycine max HOM05D005065 ORTHO05D005944 4.0e-25 119.0 175 46.9
Lalb_Chr02g0141751 Lupinus albus HOM05D005065 ORTHO05D005944 4.0e-25 119.0 134 53.7
Peaxi162Scf00268g00105 Petunia axillaris HOM05D005065 ORTHO05D005944 1.2e-24 117.5 210 41.9
Ca_10622_v3 Cicer arietinum L. HOM05D005065 ORTHO05D005944 1.5e-24 117.1 179 46.9
Thecc.08G184600 Theobroma cacao HOM05D005065 ORTHO05D005944 2.6e-24 116.3 139 48.9
Glyma.20G174600 Glycine max HOM05D005065 ORTHO05D005944 3.4e-24 115.9 131 51.9
DCAR_011533 Daucus carota HOM05D005065 ORTHO05D005944 4.5e-24 115.5 190 43.2
CiPaw.08G058800 Carya illinoinensis HOM05D005065 ORTHO05D005944 7.6e-24 114.8 198 40.9
Gohir.D05G277400 Gossypium hirsutum HOM05D005065 ORTHO05D005944 7.6e-24 114.8 168 46.4
PGR042G0986 Punica granatum HOM05D005065 ORTHO05D005944 7.6e-24 114.8 143 53.1
Cfa013844 Carpinus fangiana HOM05D005065 ORTHO05D005944 9.9e-24 114.4 202 41.1
Eucgr.F02608 Eucalyptus grandis HOM05D005065 ORTHO05D005944 9.9e-24 114.4 150 46.0
Oeu017883.1 Olea europaea HOM05D005065 ORTHO05D005944 9.9e-24 114.4 167 46.7
FAN15G3279 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.3e-23 114.0 170 44.1
Psat6g187880 Pisum sativum HOM05D005065 ORTHO05D005944 1.3e-23 114.0 186 41.4
Gohir.A05G275300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.7e-23 113.6 168 46.4
Gorai.009G290400 Gossypium raimondii HOM05D005065 ORTHO05D005944 1.7e-23 113.6 166 46.4
Lalb_Chr03g0036131 Lupinus albus HOM05D005065 ORTHO05D005944 2.2e-23 113.2 173 42.8
RcHm_v2.0_Chr6g0270871 Rosa chinensis HOM05D005065 ORTHO05D005944 2.2e-23 113.2 186 41.4
Oeu029996.1 Olea europaea HOM05D005065 ORTHO05D005944 2.9e-23 112.8 195 45.1
SGA_v2.0_scaffold149G36582 Striga asiatica HOM05D005065 ORTHO05D005944 3.8e-23 112.5 173 45.1
CiPaw.07G160300 Carya illinoinensis HOM05D005065 ORTHO05D005944 4.9e-23 112.1 203 42.4
SalBow7G0321 Salvia bowleyana HOM05D005065 ORTHO05D005944 8.4e-23 111.3 183 42.6
TPR.G8826 Trifolium pratense HOM05D005065 ORTHO05D005944 8.4e-23 111.3 183 42.6
Gohir.A13G121100 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.1e-22 110.9 172 44.2
Lalb_Chr01g0010191 Lupinus albus HOM05D005065 ORTHO05D005944 1.1e-22 110.9 173 44.5
QL02p033454 Quercus lobata HOM05D005065 ORTHO05D005944 1.1e-22 110.9 194 42.8
Lalb_Chr06g0162001 Lupinus albus HOM05D005065 ORTHO05D005944 1.4e-22 110.5 163 45.4
Solyc06g065340.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.9e-22 110.2 201 43.8
TWI60G1480 Tripterygium wilfordii HOM05D005065 ORTHO05D005944 1.9e-22 110.2 192 43.8
MSTRG.22454 Avicennia marina HOM05D005065 ORTHO05D005944 4.2e-22 109.0 186 43.0
Lalb_Chr19g0129461 Lupinus albus HOM05D005065 ORTHO05D005944 5.4e-22 108.6 178 44.4
Lalb_Chr21g0305721 Lupinus albus HOM05D005065 ORTHO05D005944 2.1e-21 106.7 201 43.3
Manes.02G192500 Manihot esculenta HOM05D005065 ORTHO05D005944 2.7e-21 106.3 170 39.4
Potri.013G111700 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.7e-21 106.3 198 41.9
Lj5g0001381 Lotus japonicus HOM05D005065 ORTHO05D005944 3.5e-21 105.9 169 44.4
PGSC0003DMG400026113 Solanum tuberosum HOM05D005065 ORTHO05D005944 3.5e-21 105.9 202 42.6
Duzib211G0507 Durio zibethinus HOM05D005065 ORTHO05D005944 4.6e-21 105.5 165 46.1
Haze_22517 Corylus avellana HOM05D005065 ORTHO05D005944 7.9e-21 104.8 202 40.1
CAN.G199.8 Capsicum annuum HOM05D005065 ORTHO05D005944 1.0e-20 104.4 217 41.0
PGR102G0471 Punica granatum HOM05D005065 ORTHO05D005944 1.3e-20 104.0 169 41.4
Peaxi162Scf01013g00001 Petunia axillaris HOM05D005065 ORTHO05D005944 1.8e-20 103.6 192 42.7
Prupe.8G058900 Prunus persica HOM05D005065 ORTHO05D005944 1.8e-20 103.6 151 42.4
Potri.019G082866 Populus trichocarpa HOM05D005065 ORTHO05D005944 2.3e-20 103.2 147 46.9
Gohir.D13G125200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 6.7e-20 101.7 172 43.0
Gorai.013G140100 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.7e-20 101.7 172 43.0
Duzib177G1167 Durio zibethinus HOM05D005065 ORTHO05D005944 8.7e-20 101.3 190 41.1
Atru.chr13.1737 Acer truncatum HOM05D005065 ORTHO05D005944 1.1e-19 100.9 163 41.1
PGSC0003DMG400014033 Solanum tuberosum HOM05D005065 ORTHO05D005944 1.9e-19 100.1 189 36.5
Cpa.g.sc66.33 Carica papaya HOM05D005065 ORTHO05D005944 2.5e-19 99.8 194 40.2
HanXRQChr05g0150531 Helianthus annuus HOM05D005065 ORTHO05D005944 4.3e-19 99.0 148 43.2
Ah.05g178140 Amaranthus hybridus HOM05D005065 ORTHO05D005944 5.6e-19 98.6 197 40.6
Aqoxy5G02380 Aquilegia oxysepala HOM05D005065 ORTHO05D005944 9.6e-19 97.8 171 40.9
Migut.C01259 Erythranthe guttata HOM05D005065 ORTHO05D005944 9.6e-19 97.8 175 40.0
Lsat_1_v5_gn_6_109661 Lactuca sativa HOM05D005065 ORTHO05D005944 9.6e-19 97.8 137 43.8
MD05G1042300 Malus domestica HOM05D005065 ORTHO05D005944 9.6e-19 97.8 182 37.9
BraA07t31379Z Brassica rapa HOM05D005065 ORTHO05D005944 2.1e-18 96.7 206 40.3
THA.LOC104800116 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.1e-18 96.7 204 39.2
THA.LOC104809741 Tarenaya hassleriana HOM05D005065 ORTHO05D005944 2.1e-18 96.7 197 39.6
AL2G31580 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 2.8e-18 96.3 160 42.5
BcaB03g14918 Brassica carinata HOM05D005065 ORTHO05D005944 4.8e-18 95.5 198 37.9
EL10Ac1g00090 Beta vulgaris HOM05D005065 ORTHO05D005944 6.2e-18 95.1 182 40.7
A02p17610 Brassica napus HOM05D005065 ORTHO05D005944 8.1e-18 94.7 197 37.1
BraA02t06807Z Brassica rapa HOM05D005065 ORTHO05D005944 8.1e-18 94.7 197 37.1
Sp5g27040 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.1e-17 94.4 156 41.0
Eucgr.F04121 Eucalyptus grandis HOM05D005065 ORTHO05D005944 1.4e-17 94.0 147 40.1
Nn5g27677 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.4e-17 94.0 151 45.0
PSO782G1863 Papaver somniferum HOM05D005065 ORTHO05D005944 1.4e-17 94.0 168 45.8
Solyc11g018710.1 Solanum lycopersicum HOM05D005065 ORTHO05D005944 1.4e-17 94.0 188 36.2
Sopen11g009740 Solanum pennellii HOM05D005065 ORTHO05D005944 1.4e-17 94.0 189 36.0
MELO3C008125.2 Cucumis melo HOM05D005065 ORTHO05D005944 1.8e-17 93.6 148 41.9
Nn1g08370 Nelumbo nucifera HOM05D005065 ORTHO05D005944 1.8e-17 93.6 209 38.8
SGA_v2.0_scaffold24G10554 Striga asiatica HOM05D005065 ORTHO05D005944 1.8e-17 93.6 160 43.1
Carub.0002s1875 Capsella rubella HOM05D005065 ORTHO05D005944 3.1e-17 92.8 158 41.1
ClCG11G008090 Citrullus lanatus HOM05D005065 ORTHO05D005944 4.0e-17 92.4 147 41.5
Sopen06g023830 Solanum pennellii HOM05D005065 ORTHO05D005944 4.0e-17 92.4 212 40.1
BcaB05g24697 Brassica carinata HOM05D005065 ORTHO05D005944 6.9e-17 91.7 209 38.3
C02p29260 Brassica napus HOM05D005065 ORTHO05D005944 1.2e-16 90.9 188 38.8
BolC2t08977H Brassica oleracea HOM05D005065 ORTHO05D005944 1.2e-16 90.9 188 38.8
Ciclev10002433m.g Citrus clementina HOM05D005065 ORTHO05D005944 1.2e-16 90.9 161 41.0
AT1G71970 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.0e-16 90.1 162 39.5
Oeu021210.1 Olea europaea HOM05D005065 ORTHO05D005944 2.0e-16 90.1 165 41.2
CARHR064790 Cardamine hirsuta HOM05D005065 ORTHO05D005944 2.6e-16 89.7 192 38.5
TAR624G0039 Trochodendron aralioides HOM05D005065 ORTHO05D005944 2.6e-16 89.7 180 38.9
Thhalv10019856m.g Eutrema salsugineum HOM05D005065 ORTHO05D005944 3.4e-16 89.4 147 40.8
BcaB03g15639 Brassica carinata HOM05D005065 ORTHO05D005944 5.8e-16 88.6 175 40.0
BcaC03g15318 Brassica carinata HOM05D005065 ORTHO05D005944 5.8e-16 88.6 207 37.2
Oeu025521.1 Olea europaea HOM05D005065 ORTHO05D005944 5.8e-16 88.6 170 40.6
AL1G36220 Arabidopsis lyrata HOM05D005065 ORTHO05D005944 1.3e-15 87.4 156 43.6
Carub.0001s2220 Capsella rubella HOM05D005065 ORTHO05D005944 1.3e-15 87.4 152 44.1
Rhsim11G0058400 Rhododendron simsii HOM05D005065 ORTHO05D005944 2.9e-15 86.3 145 42.8
Sc23g0001280 Simmondsia chinensis HOM05D005065 ORTHO05D005944 2.9e-15 86.3 138 40.6
Sabra13G0095100 Salix brachista HOM05D005065 ORTHO05D005944 3.8e-15 85.9 179 38.5
BcaC08g46641 Brassica carinata HOM05D005065 ORTHO05D005944 4.9e-15 85.5 194 38.7
BolC6t39660H Brassica oleracea HOM05D005065 ORTHO05D005944 4.9e-15 85.5 194 38.7
Medtr1g096610 Medicago truncatula HOM05D005065 ORTHO05D005944 4.9e-15 85.5 203 35.5
A07p30470 Brassica napus HOM05D005065 ORTHO05D005944 6.4e-15 85.1 180 40.6
BraA07t30683Z Brassica rapa HOM05D005065 ORTHO05D005944 6.4e-15 85.1 180 40.6
C06p46070 Brassica napus HOM05D005065 ORTHO05D005944 8.4e-15 84.7 194 37.6
C06p35230 Brassica napus HOM05D005065 ORTHO05D005944 1.4e-14 84.0 179 39.1
AT1G22680 Arabidopsis thaliana HOM05D005065 ORTHO05D005944 2.4e-14 83.2 177 41.2
FAN24G2022 Fragaria x ananassa HOM05D005065 ORTHO05D005944 3.2e-14 82.8 197 37.1
BolC6t38629H Brassica oleracea HOM05D005065 ORTHO05D005944 5.5e-14 82.0 178 38.8
CANSAT25G3119 Cannabis sativa HOM05D005065 ORTHO05D005944 1.2e-13 80.9 164 36.6
Sp1g20190 Schrenkiella parvula HOM05D005065 ORTHO05D005944 1.2e-13 80.9 157 40.8
SGA_v2.0_scaffold118G32491 Striga asiatica HOM05D005065 ORTHO05D005944 1.2e-13 80.9 139 41.7
Lsat_1_v5_gn_1_10621 Lactuca sativa HOM05D005065 ORTHO05D005944 1.6e-13 80.5 137 42.3
Sabra19G0094300 Salix brachista HOM05D005065 ORTHO05D005944 2.7e-13 79.7 111 45.0
HanXRQChr04g0107491 Helianthus annuus HOM05D005065 ORTHO05D005944 3.5e-13 79.3 181 39.8
Sed0021334 Sechium edule HOM05D005065 ORTHO05D005944 6.0e-13 78.6 152 39.5
FAN20G1873 Fragaria x ananassa HOM05D005065 ORTHO05D005944 1.0e-12 77.8 181 38.1
Aa31LG4G8650 Aethionema arabicum HOM05D005065 ORTHO05D005944 1.3e-12 77.4 175 35.4
CARHR023050 Cardamine hirsuta HOM05D005065 ORTHO05D005944 3.9e-12 75.9 157 41.4
Gorai.006G130800 Gossypium raimondii HOM05D005065 ORTHO05D005944 6.7e-12 75.1 186 36.6
Nitab4.5_0000277g0040 Nicotiana tabacum HOM05D005065 ORTHO05D005944 6.7e-12 75.1 174 39.1
FvH4_2g11630 Fragaria vesca HOM05D005065 ORTHO05D005944 1.1e-11 74.3 118 44.9
Nitab4.5_0009211g0010 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.3e-11 72.4 138 41.3
ATR0003G028 Amborella trichopoda HOM05D005065 ORTHO05D005944 7.4e-11 71.6 163 36.8
MBI09_g14012_MAGBIO Magnolia biondii HOM05D005065 ORTHO05D005944 2.1e-10 70.1 179 38.5
Gohir.D09G113300 Gossypium hirsutum HOM05D005065 ORTHO05D005944 2.8e-10 69.7 185 35.1
ATR0820G021 Amborella trichopoda HOM05D005065 ORTHO05D005944 3.7e-10 69.3 149 35.6
HPP92_009270 Vanilla planifolia HOM05D005065 ORTHO05D005944 3.7e-10 69.3 181 33.1
Gohir.A09G116200 Gossypium hirsutum HOM05D005065 ORTHO05D005944 1.8e-09 67.0 185 34.6
HPP92_006868 Vanilla planifolia HOM05D064031 ORTHO05D005944 3.1e-09 66.2 163 32.5
HPP92_005697 Vanilla planifolia HOM05D005065 ORTHO05D005944 1.2e-08 64.3 139 35.3
HPP92_006851 Vanilla planifolia HOM05D064031 ORTHO05D005944 2.0e-08 63.5 163 31.9
Nitab4.5_0002483g0030 Nicotiana tabacum HOM05D005065 ORTHO05D005944 4.9e-07 58.9 138 37.7
A07p38140 Brassica napus HOM05D005065 ORTHO05D005944 6.5e-07 58.5 163 35.6
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 6.5e-07 58.5 125 36.0
CDE06G2798 Ceratophyllum demersum HOM05D005065 ORTHO05D005944 8.4e-07 58.2 134 43.3
Lsat_1_v5_gn_3_86260 Lactuca sativa HOM05D005317 ORTHO05D005146 1.9e-06 57.0 123 31.7
TAR381G1423 Trochodendron aralioides HOM05D005065 ORTHO05D005944 1.9e-06 57.0 55 56.4
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 2.5e-06 56.6 141 32.6


User provided reference genes

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