Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 1.4e-47 192.6 95 100.0
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 2.1e-43 178.7 92 94.6
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 3.6e-43 177.9 92 92.4
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 6.1e-43 177.2 92 92.4
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 1.4e-42 176.0 92 90.2
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 2.3e-42 175.3 92 92.4
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.3e-42 175.3 92 91.3
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 5.1e-42 174.1 92 91.3
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 8.8e-42 173.3 92 91.3
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 2.6e-41 171.8 92 90.2
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 2.6e-41 171.8 92 91.3
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 3.3e-41 171.4 92 90.2
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 5.7e-41 170.6 92 89.1
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 5.7e-41 170.6 92 89.1
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 5.7e-41 170.6 92 89.1
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 5.7e-41 170.6 92 87.0
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 5.7e-41 170.6 92 88.0
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 7.4e-41 170.2 92 87.0
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 9.7e-41 169.9 92 89.1
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 9.7e-41 169.9 92 87.0
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.3e-40 169.5 91 90.1
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.7e-40 169.1 92 88.0
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 2.8e-40 168.3 92 88.0
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 2.8e-40 168.3 93 87.1
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 3.7e-40 167.9 92 87.0
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 3.7e-40 167.9 92 88.0
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 8.2e-40 166.8 92 85.9
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 8.2e-40 166.8 92 87.0
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 8.2e-40 166.8 95 85.3
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.1e-39 166.4 93 87.1
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.4e-39 166.0 92 85.9
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 1.8e-39 165.6 92 88.0
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 2.4e-39 165.2 92 83.7
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 3.1e-39 164.9 92 85.9
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 3.1e-39 164.9 92 85.9
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 4.1e-39 164.5 92 84.8
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 5.3e-39 164.1 92 85.9
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 5.3e-39 164.1 92 84.8
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 6.9e-39 163.7 92 84.8
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 6.9e-39 163.7 92 84.8
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 9.1e-39 163.3 91 85.7
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 1.2e-38 162.9 92 84.8
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 1.5e-38 162.5 92 83.7
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 2.0e-38 162.2 88 86.4
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.0e-38 162.2 92 82.6
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.6e-38 161.8 92 82.6
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.6e-38 161.8 92 82.6
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.6e-38 161.8 92 83.7
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 3.4e-38 161.4 92 83.7
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 3.4e-38 161.4 92 83.7
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 4.5e-38 161.0 92 82.6
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.9e-38 160.6 89 84.3
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 7.7e-38 160.2 92 81.5
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 7.7e-38 160.2 92 81.5
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 7.7e-38 160.2 92 83.7
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.0e-37 159.8 92 82.6
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 1.0e-37 159.8 92 81.5
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.0e-37 159.8 92 81.5
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 1.0e-37 159.8 92 81.5
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.0e-37 159.8 91 84.6
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.0e-37 159.8 91 84.6
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 1.0e-37 159.8 92 81.5
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 1.0e-37 159.8 92 83.7
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.0e-37 159.8 92 81.5
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 1.0e-37 159.8 92 81.5
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.0e-37 159.8 92 80.4
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 1.3e-37 159.5 88 89.8
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 2.2e-37 158.7 91 82.4
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.2e-37 158.7 92 81.5
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.2e-37 158.7 92 80.4
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 3.8e-37 157.9 92 81.5
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 5.0e-37 157.5 86 86.0
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 5.0e-37 157.5 88 84.1
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 5.0e-37 157.5 92 80.4
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 5.0e-37 157.5 92 80.4
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 6.5e-37 157.1 92 79.3
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 8.5e-37 156.8 92 80.4
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 8.5e-37 156.8 94 80.9
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 8.5e-37 156.8 94 80.9
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 8.5e-37 156.8 88 84.1
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.5e-36 155.2 86 87.2
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.2e-36 154.8 84 86.9
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 92 73.9
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.6e-35 152.5 92 78.3
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.7e-35 151.8 86 84.9
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 2.7e-35 151.8 93 77.4
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.7e-35 151.8 92 83.7
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 6.1e-35 150.6 92 77.2
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 7.9e-35 150.2 94 77.7
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 7.9e-35 150.2 94 77.7
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.0e-34 149.8 89 75.3
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.8e-34 149.1 88 79.5
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.3e-34 148.7 89 74.2
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 2.3e-34 148.7 92 77.2
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 2.3e-34 148.7 88 80.7
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 5.2e-34 147.5 89 77.5
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 5.2e-34 147.5 86 80.2
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 5.2e-34 147.5 91 79.1
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 6.7e-34 147.1 93 74.2
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 6.7e-34 147.1 87 80.5
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 8.8e-34 146.7 118 64.4
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.1e-33 146.4 87 79.3
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 1.5e-33 146.0 90 77.8
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 2.6e-33 145.2 89 74.2
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 3.3e-33 144.8 89 76.4
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 3.3e-33 144.8 89 76.4
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 4.4e-33 144.4 89 76.4
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 4.4e-33 144.4 89 76.4
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 9.7e-33 143.3 93 72.0
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 9.7e-33 143.3 93 72.0
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.3e-32 142.9 92 75.0
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.7e-32 142.5 92 78.3
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 2.2e-32 142.1 92 77.2
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.7e-32 141.4 89 70.8
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 4.8e-32 141.0 85 75.3
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 4.8e-32 141.0 71 91.5
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 6.3e-32 140.6 93 69.9
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 8.2e-32 140.2 93 69.9
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 8.2e-32 140.2 93 69.9
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 8.2e-32 140.2 93 69.9
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 8.2e-32 140.2 93 69.9
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 8.2e-32 140.2 93 69.9
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 8.2e-32 140.2 95 71.6
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.4e-31 139.4 88 72.7
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 1.8e-31 139.0 89 74.2
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-31 139.0 81 80.2
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-31 139.0 92 73.9
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-31 139.0 92 73.9
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.3e-31 137.5 71 93.0
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.2e-30 136.3 70 91.4
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 2.6e-30 135.2 70 90.0
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 3.8e-29 131.3 88 70.5
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 5.0e-29 131.0 70 87.1
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 5.0e-29 131.0 70 87.1
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 8.5e-29 130.2 71 85.9
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.9e-28 129.0 70 87.1
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.5e-28 128.6 115 57.4
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.5e-28 128.6 90 71.1
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 4.2e-28 127.9 71 85.9
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 1.6e-27 125.9 70 81.4
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 2.7e-27 125.2 71 80.3
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 8.0e-27 123.6 71 83.1
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.3e-26 122.1 92 66.3
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 5.7e-25 117.5 71 80.3
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 8.2e-24 113.6 84 71.4
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 8.2e-24 113.6 71 78.9
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 5.3e-23 110.9 81 67.9
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 7.0e-23 110.5 67 73.1
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.7e-22 108.6 91 65.9
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 2.2e-21 105.5 50 94.0
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.5e-20 100.9 97 54.6
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 1.4e-18 96.3 90 55.6
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 1.4e-18 96.3 90 54.4
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 1.1e-15 86.7 49 83.7
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 3.1e-15 85.1 87 50.6
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.1e-15 85.1 51 74.5
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.1e-15 85.1 51 74.5
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.1e-15 85.1 51 74.5
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.1e-15 85.1 51 74.5
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.1e-15 83.6 49 77.6
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.0e-13 80.1 48 75.0
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-13 79.3 47 72.3
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-13 79.3 49 73.5
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 3.2e-12 75.1 53 67.9
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 3.6e-11 71.6 43 79.1
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 1.8e-10 69.3 56 57.1


User provided reference genes

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