Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016122 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 1.7e-41 172.2 84 100.0
CSS0010351 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 4.1e-27 124.4 69 84.1
CSS0038447 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 6.0e-26 120.6 78 76.9
CSS0015759 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 3.9e-25 117.9 78 76.9
Hma1.2p1_0222F.1_g093490 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 2.8e-23 111.7 61 82.0
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 3.1e-22 108.2 61 83.6
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 2.0e-21 105.5 60 76.7
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 3.4e-21 104.8 61 77.0
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 1.3e-20 102.8 60 76.7
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 1.3e-20 102.8 60 76.7
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 1.7e-20 102.4 61 75.4
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 2.2e-20 102.1 61 75.4
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 2.9e-20 101.7 61 72.1
GSVIVG01001910001 Vitis vinifera HOM05D000344 ORTHO05D005296 4.9e-20 100.9 61 75.4
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 6.4e-20 100.5 62 75.8
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 8.3e-20 100.1 61 75.4
Cfa021217 Carpinus fangiana HOM05D000344 ORTHO05D005296 8.3e-20 100.1 61 75.4
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 8.3e-20 100.1 61 75.4
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 8.3e-20 100.1 61 72.1
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 1.1e-19 99.8 61 70.5
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 1.4e-19 99.4 61 75.4
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 1.9e-19 99.0 61 73.8
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 1.9e-19 99.0 61 73.8
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 1.9e-19 99.0 60 71.7
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 2.4e-19 98.6 61 72.1
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 3.2e-19 98.2 61 75.4
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 3.2e-19 98.2 61 70.5
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 3.2e-19 98.2 60 70.0
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 3.2e-19 98.2 60 70.0
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 4.1e-19 97.8 61 70.5
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 7.1e-19 97.1 61 75.4
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 9.2e-19 96.7 61 70.5
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 1.2e-18 96.3 61 68.9
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 1.6e-18 95.9 61 70.5
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 2.1e-18 95.5 62 67.7
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 2.1e-18 95.5 61 70.5
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 3.5e-18 94.7 61 67.2
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 7.8e-18 93.6 61 68.9
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 7.8e-18 93.6 61 68.9
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 7.8e-18 93.6 61 70.5
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 7.8e-18 93.6 61 68.9
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 1.0e-17 93.2 61 70.5
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 1.3e-17 92.8 62 71.0
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 1.3e-17 92.8 57 70.2
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 1.3e-17 92.8 61 65.6
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 1.7e-17 92.4 61 65.6
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 2.3e-17 92.0 63 66.7
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 3.0e-17 91.7 61 67.2
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 3.0e-17 91.7 61 67.2
FAN23G2562 Fragaria x ananassa HOM05D000344 ORTHO05D005296 3.0e-17 91.7 61 67.2
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 3.0e-17 91.7 61 67.2
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 3.0e-17 91.7 61 63.9
TAR636G1075 Trochodendron aralioides HOM05D000344 ORTHO05D005296 3.0e-17 91.7 61 68.9
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 3.9e-17 91.3 61 68.9
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 5.1e-17 90.9 61 63.9
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 5.1e-17 90.9 61 63.9
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 6.6e-17 90.5 63 63.5
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 8.6e-17 90.1 61 67.2
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 1.1e-16 89.7 61 65.6
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 1.1e-16 89.7 61 62.3
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 1.1e-16 89.7 61 65.6
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 1.1e-16 89.7 61 63.9
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 1.1e-16 89.7 61 67.2
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.5e-16 89.4 61 62.3
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 1.9e-16 89.0 61 63.9
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 3.3e-16 88.2 61 63.9
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 3.3e-16 88.2 61 63.9
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 3.3e-16 88.2 61 63.9
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 3.3e-16 88.2 60 65.0
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 4.3e-16 87.8 61 67.2
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 5.6e-16 87.4 61 60.7
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 9.5e-16 86.7 61 63.9
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 9.5e-16 86.7 61 63.9
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 1.6e-15 85.9 61 63.9
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 1.6e-15 85.9 61 65.6
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 1.6e-15 85.9 60 65.0
unitig_8.g3634 Utricularia gibba HOM05D000344 ORTHO05D005296 3.6e-15 84.7 61 63.9
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 1.4e-14 82.8 61 60.7
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 6.8e-14 80.5 61 63.9
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 6.8e-14 80.5 62 62.9
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 4.4e-13 77.8 62 56.5
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 5.8e-13 77.4 53 67.9
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 5.8e-13 77.4 63 61.9
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 5.8e-13 77.4 64 56.2
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 1.3e-12 76.3 65 55.4
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 1.3e-12 76.3 65 58.5
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 3.8e-12 74.7 62 51.6
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 3.8e-12 74.7 74 52.7
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 4.9e-12 74.3 64 56.2
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 8.4e-12 73.6 65 53.8
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 8.4e-12 73.6 65 53.8
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.4e-11 72.8 65 53.8
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 1.4e-11 72.8 47 66.0
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 1.4e-11 72.8 65 53.8
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 1.4e-11 72.8 45 68.9
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 1.4e-11 72.8 45 68.9
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 1.9e-11 72.4 64 53.1
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 3.2e-11 71.6 42 66.7
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 7.1e-11 70.5 64 51.6
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 7.1e-11 70.5 64 51.6
C09p49800 Brassica napus HOM05D000344 ORTHO05D005296 9.2e-11 70.1 74 50.0
A10p16190 Brassica napus HOM05D000344 ORTHO05D005296 1.2e-10 69.7 65 52.3
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 1.2e-10 69.7 65 52.3
BraA10t43610Z Brassica rapa HOM05D000344 ORTHO05D005296 1.2e-10 69.7 65 52.3
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 1.2e-10 69.7 40 70.0
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 1.6e-10 69.3 63 50.8
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 1.6e-10 69.3 63 50.8
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 1.6e-10 69.3 52 59.6
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 2.1e-10 68.9 50 56.0
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 2.7e-10 68.6 59 52.5
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 4.6e-10 67.8 62 48.4
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 1.0e-09 66.6 50 60.0
HPP92_010393 Vanilla planifolia HOM05D000344 ORTHO05D014129 1.3e-09 66.2 64 54.7
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 5.1e-09 64.3 37 70.3
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 1.1e-08 63.2 63 49.2
ECA234G2365 Erigeron canadensis HOM05D000344 ORTHO05D004969 1.5e-08 62.8 42 61.9
A02p08070 Brassica napus HOM05D000344 ORTHO05D005296 1.9e-08 62.4 66 51.5
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 5.6e-08 60.8 42 57.1
Hma1.2p1_0028F.1_g017540 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 7.3e-08 60.5 42 69.0
EL10Ac7g17422 Beta vulgaris HOM05D000344 ORTHO05D005296 2.1e-07 58.9 43 67.4
BcaB05g22390 Brassica carinata HOM05D000344 ORTHO05D005296 8.1e-07 57.0 57 50.9
TPR.G8014 Trifolium pratense HOM05D000344 ORTHO05D005296 8.1e-07 57.0 38 63.2
Lsat_1_v5_gn_5_91020 Lactuca sativa HOM05D000344 ORTHO05D005296 1.4e-06 56.2 70 45.7
SHI02820 Sapria himalayana HOM05D000344 ORTHO05D005296 1.8e-06 55.8 59 47.5
Carub.0008s1852 Capsella rubella HOM05D000344 ORTHO05D005296 5.2e-06 54.3 64 40.6


User provided reference genes

Program Settings