Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016103 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D043278 6.9e-69 263.8 132 100.0
Actinidia22790 Actinidia chinensis HOM05D000237 ORTHO05D005051 7.9e-41 170.6 116 74.1
Actinidia17225 Actinidia chinensis HOM05D000237 ORTHO05D005051 1.5e-36 156.4 116 69.8
CSS0025553 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D005051 1.3e-35 153.3 116 68.1
Lj4A177T26 Lonicera japonica HOM05D000237 ORTHO05D005051 1.1e-34 150.2 120 65.0
TAR629G1729 Trochodendron aralioides HOM05D000237 ORTHO05D005051 2.1e-33 146.0 125 64.0
CiPaw.03G069600 Carya illinoinensis HOM05D000237 ORTHO05D005051 7.9e-33 144.1 119 63.0
vmacro22372 Vaccinium macrocarpon HOM05D000237 ORTHO05D005051 1.0e-32 143.7 116 65.5
vmacro22898 Vaccinium macrocarpon HOM05D000237 ORTHO05D005051 1.0e-32 143.7 116 65.5
TAR371G0812 Trochodendron aralioides HOM05D000237 ORTHO05D005051 1.3e-32 143.3 125 63.2
GSVIVG01030840001 Vitis vinifera HOM05D000237 ORTHO05D005051 2.3e-32 142.5 116 66.4
Hma1.2p1_0832F.1_g225530 Hydrangea macrophylla HOM05D000237 ORTHO05D005051 8.7e-32 140.6 116 60.3
Nn4g24201 Nelumbo nucifera HOM05D000237 ORTHO05D005051 1.1e-31 140.2 125 57.6
Peaxi162Scf02113g00020 Petunia axillaris HOM05D000237 ORTHO05D005051 1.1e-31 140.2 116 62.1
Haze_14234 Corylus avellana HOM05D000237 ORTHO05D005051 1.5e-31 139.8 119 62.2
Cfa007831 Carpinus fangiana HOM05D000237 ORTHO05D005051 1.9e-31 139.4 119 62.2
Potri.004G089100 Populus trichocarpa HOM05D000237 ORTHO05D005051 1.9e-31 139.4 119 63.0
Sabra17G0106200 Salix brachista HOM05D000237 ORTHO05D005051 1.9e-31 139.4 119 63.0
Cc07_g08090 Coffea canephora HOM05D000237 ORTHO05D005051 9.7e-31 137.1 116 60.3
Cpa.g.sc116.32 Carica papaya HOM05D000237 ORTHO05D005051 1.7e-30 136.3 119 62.2
Nitab4.5_0009638g0030 Nicotiana tabacum HOM05D000237 ORTHO05D005051 1.7e-30 136.3 116 58.6
QL11p003873 Quercus lobata HOM05D000237 ORTHO05D005051 1.7e-30 136.3 118 61.0
Oeu000909.1 Olea europaea HOM05D000237 ORTHO05D005051 2.8e-30 135.6 116 61.2
Sabra04G0059700 Salix brachista HOM05D000237 ORTHO05D005051 2.8e-30 135.6 128 57.8
Nitab4.5_0002664g0070 Nicotiana tabacum HOM05D000237 ORTHO05D005051 4.8e-30 134.8 116 56.9
Prupe.3G160300 Prunus persica HOM05D000237 ORTHO05D005051 4.8e-30 134.8 119 61.3
FAN23G0123 Fragaria x ananassa HOM05D000237 ORTHO05D005051 6.3e-30 134.4 119 62.2
CAN.G1061.45 Capsicum annuum HOM05D000237 ORTHO05D005051 8.2e-30 134.0 117 60.7
MELO3C022852.2 Cucumis melo HOM05D000237 ORTHO05D005051 8.2e-30 134.0 119 61.3
Glyma.11G217400 Glycine max HOM05D000237 ORTHO05D005051 1.1e-29 133.7 126 58.7
MD17G1257500 Malus domestica HOM05D000237 ORTHO05D005051 1.1e-29 133.7 117 60.7
Manes.01G116400 Manihot esculenta HOM05D000237 ORTHO05D005051 1.1e-29 133.7 119 60.5
DCAR_025871 Daucus carota HOM05D000237 ORTHO05D005051 1.4e-29 133.3 112 59.8
Rhsim08G0086700 Rhododendron simsii HOM05D000237 ORTHO05D005051 1.4e-29 133.3 117 63.2
PGSC0003DMG400030607 Solanum tuberosum HOM05D000237 ORTHO05D005051 1.4e-29 133.3 116 62.1
FAN19G0223 Fragaria x ananassa HOM05D000237 ORTHO05D005051 1.8e-29 132.9 119 63.0
RcHm_v2.0_Chr3g0493411 Rosa chinensis HOM05D000237 ORTHO05D005051 1.8e-29 132.9 119 63.0
VMungo1383G2011 Vigna mungo HOM05D000237 ORTHO05D005051 1.8e-29 132.9 119 60.5
Nn3g18249 Nelumbo nucifera HOM05D000237 ORTHO05D005051 2.4e-29 132.5 124 57.3
Psat5g122360 Pisum sativum HOM05D000237 ORTHO05D005051 2.4e-29 132.5 117 59.0
FAN28G2693 Fragaria x ananassa HOM05D000237 ORTHO05D005051 3.1e-29 132.1 119 63.0
TWI53G2128 Tripterygium wilfordii HOM05D000237 ORTHO05D005051 3.1e-29 132.1 120 63.3
COL.COLO4_15734 Corchorus olitorius HOM05D000237 ORTHO05D005051 4.1e-29 131.7 119 60.5
Lj6g0016753 Lotus japonicus HOM05D000237 ORTHO05D005051 4.1e-29 131.7 119 59.7
Potri.017G126500 Populus trichocarpa HOM05D000237 ORTHO05D005051 4.1e-29 131.7 119 59.7
ClCG03G008660 Citrullus lanatus HOM05D000237 ORTHO05D005051 5.3e-29 131.3 119 59.7
FvH4_1g28910 Fragaria vesca HOM05D000237 ORTHO05D005051 5.3e-29 131.3 119 62.2
TWI74G0299 Tripterygium wilfordii HOM05D000237 ORTHO05D005051 5.3e-29 131.3 119 62.2
Duzib133G0765 Durio zibethinus HOM05D000237 ORTHO05D005051 9.1e-29 130.6 119 60.5
Glyma.18G039400 Glycine max HOM05D000237 ORTHO05D005051 9.1e-29 130.6 119 59.7
Solyc02g091470.3 Solanum lycopersicum HOM05D000237 ORTHO05D005051 1.2e-28 130.2 116 60.3
Sopen02g036090 Solanum pennellii HOM05D000237 ORTHO05D005051 1.2e-28 130.2 116 60.3
MD09G1262600 Malus domestica HOM05D000237 ORTHO05D005051 1.5e-28 129.8 119 59.7
CsaV3_5G024060 Cucumis sativus L. HOM05D000237 ORTHO05D005051 2.0e-28 129.4 120 60.8
Phvul.001G231200 Phaseolus vulgaris HOM05D000237 ORTHO05D005051 2.0e-28 129.4 119 58.0
Ciclev10011487m.g Citrus clementina HOM05D000237 ORTHO05D005051 2.6e-28 129.0 119 58.8
Gohir.D12G055700 Gossypium hirsutum HOM05D000237 ORTHO05D005051 4.5e-28 128.3 119 58.8
Lalb_Chr15g0084841 Lupinus albus HOM05D000237 ORTHO05D005051 4.5e-28 128.3 112 59.8
Duzib211G0213 Durio zibethinus HOM05D000237 ORTHO05D005051 5.9e-28 127.9 119 59.7
Gohir.A12G056300 Gossypium hirsutum HOM05D000237 ORTHO05D005051 5.9e-28 127.9 119 59.7
Sed0017177 Sechium edule HOM05D000237 ORTHO05D005051 5.9e-28 127.9 116 57.8
Ca_08160_v3 Cicer arietinum L. HOM05D000237 ORTHO05D005051 7.7e-28 127.5 113 57.5
Medtr3g067650 Medicago truncatula HOM05D000237 ORTHO05D005051 7.7e-28 127.5 117 57.3
Thecc.04G119200 Theobroma cacao HOM05D000237 ORTHO05D005051 7.7e-28 127.5 119 59.7
Gorai.008G058700 Gossypium raimondii HOM05D000237 ORTHO05D005051 1.7e-27 126.3 119 58.8
DCAR_021456 Daucus carota HOM05D000237 ORTHO05D005051 2.9e-27 125.6 118 55.1
Oeu047408.1 Olea europaea HOM05D000237 ORTHO05D005051 2.9e-27 125.6 102 61.8
arahy.Tifrunner.gnm1.ann1.I7EQFT Arachis hypogaea HOM05D000237 ORTHO05D005051 3.8e-27 125.2 119 57.1
arahy.Tifrunner.gnm1.ann1.PJZ2BQ Arachis hypogaea HOM05D000237 ORTHO05D005051 3.8e-27 125.2 119 57.1
Lsat_1_v5_gn_3_81141 Lactuca sativa HOM05D000237 ORTHO05D005051 6.5e-27 124.4 116 55.2
ECA246G3284 Erigeron canadensis HOM05D000237 ORTHO05D005051 8.5e-27 124.0 117 55.6
Lj2C434T10 Lonicera japonica HOM05D000237 ORTHO05D005051 1.1e-26 123.6 116 54.3
TPR.G16688 Trifolium pratense HOM05D000237 ORTHO05D005051 1.1e-26 123.6 117 58.1
Atru.chr1.1842 Acer truncatum HOM05D000237 ORTHO05D005051 1.9e-26 122.9 121 59.5
MSTRG.3516 Avicennia marina HOM05D000237 ORTHO05D005051 1.9e-26 122.9 124 55.6
PGSC0003DMG400010411 Solanum tuberosum HOM05D000237 ORTHO05D005051 1.9e-26 122.9 109 53.2
MSTRG.23617 Avicennia marina HOM05D000237 ORTHO05D005051 2.5e-26 122.5 116 54.3
HanXRQChr15g0475441 Helianthus annuus HOM05D000237 ORTHO05D005051 2.5e-26 122.5 118 55.1
Manes.02G075200 Manihot esculenta HOM05D000237 ORTHO05D005051 3.2e-26 122.1 118 57.6
Peaxi162Scf01482g00010 Petunia axillaris HOM05D000237 ORTHO05D005051 7.2e-26 120.9 109 56.0
C06p39800 Brassica napus HOM05D000237 ORTHO05D005051 1.6e-25 119.8 117 55.6
Nitab4.5_0003855g0010 Nicotiana tabacum HOM05D000237 ORTHO05D005051 1.6e-25 119.8 123 53.7
BolC6t39067H Brassica oleracea HOM05D000237 ORTHO05D005051 2.7e-25 119.0 117 55.6
Solyc02g063330.3 Solanum lycopersicum HOM05D000237 ORTHO05D005051 3.6e-25 118.6 109 52.3
Sopen02g014400 Solanum pennellii HOM05D000237 ORTHO05D005051 3.6e-25 118.6 109 52.3
Nitab4.5_0000036g0490 Nicotiana tabacum HOM05D000237 ORTHO05D005051 6.1e-25 117.9 123 53.7
HanXRQChr12g0375611 Helianthus annuus HOM05D000237 ORTHO05D005051 1.0e-24 117.1 120 51.7
Oeu030813.2 Olea europaea HOM05D000237 ORTHO05D005051 1.4e-24 116.7 117 53.8
vmacro18047 Vaccinium macrocarpon HOM05D000237 ORTHO05D005051 1.4e-24 116.7 124 55.6
Phvul.008G234600 Phaseolus vulgaris HOM05D000237 ORTHO05D005051 3.0e-24 115.5 119 54.6
BraA07t30967Z Brassica rapa HOM05D000237 ORTHO05D005051 5.1e-24 114.8 114 55.3
BcaB03g15269 Brassica carinata HOM05D000237 ORTHO05D005051 8.8e-24 114.0 117 53.8
BcaC08g46055 Brassica carinata HOM05D000237 ORTHO05D005051 8.8e-24 114.0 117 53.8
PGR042G0645 Punica granatum HOM05D000237 ORTHO05D005051 8.8e-24 114.0 123 53.7
CAN.G1067.6 Capsicum annuum HOM05D000237 ORTHO05D005051 1.1e-23 113.6 109 50.5
A07p33400 Brassica napus HOM05D000237 ORTHO05D005051 2.6e-23 112.5 117 53.0
Eucgr.F02834 Eucalyptus grandis HOM05D000237 ORTHO05D005051 3.3e-23 112.1 115 55.7
Glyma.02G246000 Glycine max HOM05D000237 ORTHO05D005051 4.4e-23 111.7 119 51.3
Glyma.14G216100 Glycine max HOM05D000237 ORTHO05D005051 4.4e-23 111.7 112 54.5
PSO478G0921 Papaver somniferum HOM05D000237 ORTHO05D005051 4.4e-23 111.7 126 54.0
VMungo0647G1065 Vigna mungo HOM05D000237 ORTHO05D005051 4.4e-23 111.7 119 52.9
Eucgr.J01549 Eucalyptus grandis HOM05D000237 ORTHO05D005051 7.4e-23 110.9 118 50.8
CARHR058430 Cardamine hirsuta HOM05D000237 ORTHO05D005051 1.3e-22 110.2 112 52.7
Aqoxy3G00096 Aquilegia oxysepala HOM05D000237 ORTHO05D005051 1.7e-22 109.8 132 50.0
AL2G24280 Arabidopsis lyrata HOM05D000237 ORTHO05D005051 1.7e-22 109.8 115 53.0
arahy.Tifrunner.gnm1.ann1.MDT9N6 Arachis hypogaea HOM05D000237 ORTHO05D005051 1.7e-22 109.8 126 54.0
PSO017G6062 Papaver somniferum HOM05D000237 ORTHO05D005051 2.2e-22 109.4 119 56.3
CARHR214970 Cardamine hirsuta HOM05D000237 ORTHO05D005051 4.8e-22 108.2 116 51.7
THA.LOC104805606 Tarenaya hassleriana HOM05D000237 ORTHO05D005051 4.8e-22 108.2 113 51.3
Hund13686 Selenicereus undatus HOM05D000237 ORTHO05D005051 6.3e-22 107.8 118 53.4
AT5G37790 Arabidopsis thaliana HOM05D000237 ORTHO05D005051 1.4e-21 106.7 114 53.5
Carub.0002s1249 Capsella rubella HOM05D000237 ORTHO05D005051 1.4e-21 106.7 116 48.3
Migut.L00462 Erythranthe guttata HOM05D000237 ORTHO05D005051 1.8e-21 106.3 114 50.0
Carub.0007s3297 Capsella rubella HOM05D000237 ORTHO05D005051 2.4e-21 105.9 114 50.0
BcaC08g44350 Brassica carinata HOM05D000237 ORTHO05D005051 3.1e-21 105.5 122 51.6
C06p17910 Brassica napus HOM05D000237 ORTHO05D005051 3.1e-21 105.5 122 51.6
Aa31LG2G3110 Aethionema arabicum HOM05D000237 ORTHO05D005051 4.1e-21 105.1 117 50.4
arahy.Tifrunner.gnm1.ann1.7W3XT8 Arachis hypogaea HOM05D000237 ORTHO05D005051 5.3e-21 104.8 127 53.5
Sc11g0008670 Simmondsia chinensis HOM05D000237 ORTHO05D005051 5.3e-21 104.8 118 51.7
THA.LOC104823844 Tarenaya hassleriana HOM05D000237 ORTHO05D005051 5.3e-21 104.8 116 47.4
AL7G46670 Arabidopsis lyrata HOM05D000237 ORTHO05D005051 6.9e-21 104.4 114 52.6
Sp5g21520 Schrenkiella parvula HOM05D000237 ORTHO05D005051 9.1e-21 104.0 116 49.1
Ah.10g038030 Amaranthus hybridus HOM05D000237 ORTHO05D005051 1.2e-20 103.6 118 51.7
BolC6t36981H Brassica oleracea HOM05D000237 ORTHO05D005051 1.2e-20 103.6 122 50.8
Aa31LG9G17360 Aethionema arabicum HOM05D000237 ORTHO05D005051 2.0e-20 102.8 122 47.5
Thhalv10027710m.g Eutrema salsugineum HOM05D000237 ORTHO05D005051 2.0e-20 102.8 122 51.6
SalBow3G2506 Salvia bowleyana HOM05D000237 ORTHO05D005051 3.4e-20 102.1 116 51.7
Sp7g04250 Schrenkiella parvula HOM05D000237 ORTHO05D005051 3.4e-20 102.1 122 48.4
SGA_v2.0_scaffold49G18155 Striga asiatica HOM05D000237 ORTHO05D005051 3.4e-20 102.1 123 51.2
A04p10980 Brassica napus HOM05D000237 ORTHO05D005051 4.5e-20 101.7 121 49.6
BraA04t16763Z Brassica rapa HOM05D000237 ORTHO05D005051 4.5e-20 101.7 121 49.6
PGR004G1278 Punica granatum HOM05D000237 ORTHO05D005051 4.5e-20 101.7 121 49.6
Ah.16g101240 Amaranthus hybridus HOM05D000237 ORTHO05D005051 5.9e-20 101.3 118 50.8
BcaB06g27140 Brassica carinata HOM05D000237 ORTHO05D005051 1.7e-19 99.8 122 49.2
BcaC02g09612 Brassica carinata HOM05D000237 ORTHO05D005051 1.7e-19 99.8 121 47.9
C04p44730 Brassica napus HOM05D000237 ORTHO05D005051 1.7e-19 99.8 121 47.9
BolC4t26047H Brassica oleracea HOM05D000237 ORTHO05D005051 1.7e-19 99.8 121 47.9
EL10Ac2g04470 Beta vulgaris HOM05D000237 ORTHO05D005051 2.2e-19 99.4 119 52.1
AUR62023182 Chenopodium quinoa HOM05D000237 ORTHO05D005051 3.8e-19 98.6 118 51.7
AUR62023228 Chenopodium quinoa HOM05D000237 ORTHO05D005051 3.8e-19 98.6 118 51.7
Sed0017144 Sechium edule HOM05D000237 ORTHO05D005051 3.8e-19 98.6 111 51.4
Thhalv10019672m.g Eutrema salsugineum HOM05D000237 ORTHO05D005051 1.4e-18 96.7 105 48.6
Migut.H00274 Erythranthe guttata HOM05D000237 ORTHO05D005051 3.2e-18 95.5 127 44.9
Hund16211 Selenicereus undatus HOM05D000237 ORTHO05D005051 4.2e-18 95.1 111 50.5
THA.LOC104822378 Tarenaya hassleriana HOM05D000237 ORTHO05D005051 4.2e-18 95.1 125 44.8
Glyma.17G158800 Glycine max HOM05D000237 ORTHO05D043278 5.7e-15 84.7 101 45.5
FAN26G2327 Fragaria x ananassa HOM05D000237 ORTHO05D005051 2.8e-14 82.4 118 47.5
Dinv19019 Davidia involucrata HOM05D000237 ORTHO05D005051 4.8e-14 81.6 60 70.0
HPP92_011080 Vanilla planifolia HOM05D000237 ORTHO05D005051 4.1e-13 78.6 120 44.2
HPP92_011084 Vanilla planifolia HOM05D000237 ORTHO05D005051 4.1e-13 78.6 120 44.2
CDE05G1072 Ceratophyllum demersum HOM05D000237 ORTHO05D005051 2.0e-12 76.3 114 43.0
CDE05G2689 Ceratophyllum demersum HOM05D000237 ORTHO05D005051 7.7e-12 74.3 131 39.7
Hma1.2p1_0283F.1_g113470 Hydrangea macrophylla HOM05D000237 ORTHO05D005051 1.0e-11 73.9 59 61.0
ATR0564G096 Amborella trichopoda HOM05D000237 ORTHO05D005051 3.2e-10 68.9 108 33.3
MBI12_g44964_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D005051 1.6e-09 66.6 114 40.4
MBI12_g45865_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D005051 2.1e-09 66.2 114 40.4
SEGI_15821 Sequoiadendron giganteum HOM05D000237 ORTHO05D005051 1.0e-08 63.9 119 36.1
HPP92_016577 Vanilla planifolia HOM05D000237 ORTHO05D005051 4.8e-06 55.1 129 37.2


User provided reference genes

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