Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 3.1e-116 421.8 205 100.0
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 6.6e-103 377.5 205 86.8
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 3.1e-100 368.6 205 85.4
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 3.1e-100 368.6 205 85.4
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 7.1e-97 357.5 204 82.8
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 9.2e-97 357.1 205 81.5
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 3.9e-95 351.7 202 83.7
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 8.6e-95 350.5 205 82.4
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 1.1e-94 350.1 205 81.5
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.5e-94 349.7 205 80.5
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 2.5e-94 349.0 205 80.5
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 3.3e-94 348.6 206 81.6
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 3.3e-94 348.6 207 81.2
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 7.3e-94 347.4 205 80.0
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 9.6e-94 347.1 204 80.9
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 1.2e-93 346.7 209 80.4
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.6e-93 346.3 207 79.7
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 2.8e-93 345.5 205 79.0
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 2.8e-93 345.5 208 80.8
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 2.8e-93 345.5 205 81.0
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 4.7e-93 344.7 205 80.5
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 4.7e-93 344.7 203 80.8
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 4.7e-93 344.7 205 80.5
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 1.4e-92 343.2 205 78.5
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 1.4e-92 343.2 205 79.0
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.4e-92 343.2 205 81.0
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.8e-92 342.8 205 78.0
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 3.1e-92 342.0 205 80.0
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 4.0e-92 341.7 201 79.1
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 4.0e-92 341.7 205 78.5
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 5.2e-92 341.3 210 78.6
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 6.9e-92 340.9 205 79.0
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 8.9e-92 340.5 205 79.0
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 8.9e-92 340.5 205 80.5
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.5e-91 339.7 205 78.0
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 3.4e-91 338.6 203 77.8
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 4.4e-91 338.2 204 77.9
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 4.4e-91 338.2 202 79.7
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 5.8e-91 337.8 203 79.3
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 7.6e-91 337.4 203 77.3
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 7.6e-91 337.4 205 77.6
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 1.3e-90 336.7 199 81.9
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 2.2e-90 335.9 210 77.6
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 2.9e-90 335.5 204 77.0
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 2.9e-90 335.5 207 78.3
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 4.9e-90 334.7 207 77.8
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 8.4e-90 334.0 206 79.1
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 1.1e-89 333.6 198 79.8
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 1.1e-89 333.6 209 75.6
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 1.1e-89 333.6 202 78.7
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 1.4e-89 333.2 207 76.8
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 1.4e-89 333.2 207 77.3
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.4e-89 333.2 198 80.3
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 1.4e-89 333.2 207 75.8
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 1.9e-89 332.8 197 82.2
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 1.9e-89 332.8 201 80.6
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 2.4e-89 332.4 198 79.8
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 4.2e-89 331.6 205 78.0
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 5.4e-89 331.3 198 79.3
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 5.4e-89 331.3 198 79.3
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 7.1e-89 330.9 193 80.8
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.2e-88 330.1 205 76.6
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.2e-88 330.1 198 79.8
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.1e-88 329.3 217 76.0
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 2.1e-88 329.3 202 77.2
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 2.7e-88 328.9 197 80.7
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.7e-88 328.9 197 80.7
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 3.5e-88 328.6 200 77.5
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 7.8e-88 327.4 207 75.4
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 7.8e-88 327.4 197 81.7
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 1.0e-87 327.0 206 75.2
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 1.3e-87 326.6 209 75.1
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.3e-87 326.6 207 75.8
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 1.7e-87 326.2 200 77.5
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 1.7e-87 326.2 202 75.2
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 2.3e-87 325.9 207 75.8
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 2.3e-87 325.9 204 77.0
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 3.0e-87 325.5 208 75.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 8.7e-87 323.9 205 76.6
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.1e-86 323.6 198 77.8
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 1.1e-86 323.6 228 68.4
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 1.5e-86 323.2 200 77.0
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.5e-86 322.4 200 78.0
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 3.3e-86 322.0 200 76.0
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 4.3e-86 321.6 200 78.5
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 5.6e-86 321.2 202 76.7
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 5.6e-86 321.2 205 76.1
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.6e-85 319.7 200 77.5
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 2.8e-85 318.9 203 74.4
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 2.4e-84 315.8 205 74.6
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 6.9e-84 314.3 200 76.0
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 2.6e-83 312.4 202 74.3
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 2.6e-83 312.4 202 74.3
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 3.4e-83 312.0 204 74.5
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 4.5e-83 311.6 204 74.5
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.2e-81 305.4 200 74.5
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 3.2e-81 305.4 200 74.5
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 4.2e-81 305.1 200 74.5
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 3.1e-76 288.9 166 82.5
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 2.6e-75 285.8 171 78.9
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 5.8e-75 284.6 197 68.5
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 7.6e-75 284.3 198 69.7
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.3e-74 283.5 183 74.9
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 2.2e-74 282.7 203 69.0
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 4.0e-68 261.9 201 62.7
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 3.8e-66 255.4 205 58.0
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 8.4e-66 254.2 150 82.0
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 8.4e-66 254.2 167 74.3
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 3.0e-63 245.7 201 57.2
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 3.9e-63 245.4 200 60.0
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.1e-62 243.8 205 61.5
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.1e-62 243.8 205 61.5
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 2.4e-60 236.1 202 56.9
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 5.3e-60 235.0 161 69.6
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 9.3e-57 224.2 134 81.3
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 2.7e-56 222.6 195 59.0
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 3.3e-54 215.7 145 74.5
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 6.1e-48 194.9 124 71.8
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 8.8e-47 191.0 145 68.3
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 3.3e-46 189.1 145 67.6
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.8e-44 183.3 119 73.1
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 4.1e-44 182.2 119 73.1
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 7.7e-43 177.9 168 58.9
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 3.8e-42 175.6 97 81.4
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 1.1e-36 157.5 160 51.2
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.5e-33 147.1 100 75.0
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 1.6e-32 143.7 100 71.0
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 2.2e-29 133.3 204 43.6
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 6.3e-29 131.7 197 40.1
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.5e-25 120.6 90 67.8
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 2.7e-24 116.3 75 72.0
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 6.3e-21 105.1 75 70.7
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 2.4e-20 103.2 62 75.8
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 9.8e-14 81.3 59 69.5
Lalb_Chr05g0228961 Lupinus albus HOM05D005624 ORTHO05D006896 3.3e-09 66.2 37 81.1
Lsat_1_v5_gn_4_78441 Lactuca sativa HOM05D005624 ORTHO05D006896 1.2e-08 64.3 41 73.2
SEGI_32969 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 4.7e-08 62.4 40 77.5
Os09g0512900 Oryza sativa ssp. japonica HOM05D005624 ORTHO05D006896 8.0e-08 61.6 36 80.6
MBI11_g04264_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D000004 9.8e-06 54.7 29 86.2


User provided reference genes

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