Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 4.2e-215 751.1 393 100.0
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.7e-187 659.4 404 87.4
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 8.6e-184 647.1 406 84.2
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 7.8e-177 624.0 404 82.4
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 3.0e-176 622.1 406 82.0
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.3e-171 606.7 399 82.0
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 7.0e-170 600.9 404 79.0
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.3e-168 596.7 404 77.2
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.3e-168 596.7 405 78.3
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 1.8e-165 586.3 405 75.8
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 2.0e-164 582.8 404 75.2
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 4.4e-164 581.6 405 75.6
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 4.4e-164 581.6 405 75.6
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 4.4e-164 581.6 399 77.7
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 7.5e-164 580.9 404 75.0
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 9.8e-164 580.5 402 77.1
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.3e-163 580.1 404 75.7
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.9e-163 578.9 404 75.5
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.9e-163 578.9 404 75.5
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 6.4e-163 577.8 404 76.2
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 5.4e-162 574.7 404 75.7
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 7.1e-162 574.3 407 75.7
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 3.5e-161 572.0 419 73.0
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 6.0e-161 571.2 406 73.9
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 2.3e-160 569.3 405 75.3
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 3.0e-160 568.9 404 74.0
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 3.0e-160 568.9 404 75.2
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.1e-160 568.2 409 75.3
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 5.1e-160 568.2 406 73.4
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 8.6e-160 567.4 409 75.3
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 1.5e-159 566.6 406 75.9
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 3.3e-159 565.5 403 73.4
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 3.3e-159 565.5 407 74.7
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 3.3e-159 565.5 407 74.7
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 3.3e-159 565.5 402 75.4
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 3.3e-159 565.5 406 73.2
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.6e-158 562.0 409 73.1
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 3.6e-158 562.0 409 73.8
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 6.2e-158 561.2 409 72.9
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.1e-157 560.5 409 73.1
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 1.4e-157 560.1 399 74.4
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 1.4e-157 560.1 403 73.4
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.8e-157 559.7 404 74.0
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 2.3e-157 559.3 402 74.1
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.1e-157 558.9 409 72.6
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 5.2e-157 558.1 405 75.1
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 1.2e-156 557.0 402 73.9
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.6e-156 555.8 403 72.2
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 3.4e-156 555.4 404 72.5
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 4.4e-156 555.1 404 72.5
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 2.2e-155 552.7 405 73.1
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.9e-155 552.4 409 72.1
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.4e-154 550.1 443 70.4
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 5.4e-154 548.1 404 72.0
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 7.1e-154 547.7 453 68.2
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 9.2e-154 547.4 404 71.0
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.2e-153 547.0 402 72.6
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 1.2e-153 547.0 450 66.0
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 1.6e-153 546.6 400 72.8
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.7e-153 545.8 406 73.2
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.5e-153 545.4 404 71.3
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 6.0e-153 544.7 394 73.4
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 6.0e-153 544.7 394 73.4
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 6.0e-153 544.7 399 72.4
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.0e-152 543.9 409 72.9
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.0e-152 543.9 397 71.8
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 1.3e-152 543.5 405 72.6
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 2.3e-152 542.7 407 71.7
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.9e-151 539.7 400 72.2
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 3.3e-151 538.9 405 70.6
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 9.6e-151 537.3 405 72.6
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.6e-150 536.6 404 70.8
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 2.1e-150 536.2 439 66.7
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.1e-149 533.9 409 71.1
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 3.1e-149 532.3 399 71.2
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 4.0e-149 531.9 401 71.8
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 8.9e-149 530.8 389 73.3
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.2e-148 530.4 400 72.0
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 7.6e-148 527.7 406 70.7
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 8.4e-147 524.2 406 70.2
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 1.2e-145 520.4 402 70.6
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 2.7e-145 519.2 401 69.6
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.3e-144 516.9 406 69.5
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.7e-144 516.5 402 69.7
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 3.9e-144 515.4 412 68.7
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 3.9e-144 515.4 401 68.8
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 1.5e-143 513.5 410 68.8
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 2.5e-143 512.7 401 69.8
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 4.3e-143 511.9 406 68.7
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 4.3e-143 511.9 406 68.7
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 7.3e-143 511.1 402 68.2
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 1.3e-142 510.4 406 68.5
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 1.6e-142 510.0 402 67.7
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 2.8e-142 509.2 406 68.5
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.8e-142 509.2 394 70.8
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 3.6e-142 508.8 406 68.2
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.6e-142 508.8 406 68.5
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 2.4e-141 506.1 408 65.9
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.0e-141 505.4 406 68.5
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 6.9e-141 504.6 402 68.9
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.2e-140 503.8 396 66.4
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 1.5e-140 503.4 404 67.3
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.0e-140 503.1 412 67.7
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.7e-139 500.0 430 64.0
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 8.4e-139 497.7 404 66.8
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.1e-138 497.3 403 66.7
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.4e-138 496.1 406 65.3
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 5.4e-138 495.0 407 68.6
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 1.6e-137 493.4 406 66.0
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 7.9e-137 491.1 404 67.1
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 3.0e-136 489.2 404 64.4
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 3.3e-135 485.7 396 63.4
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-134 483.4 408 63.7
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 1.2e-132 477.2 416 64.2
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 2.1e-129 466.5 403 65.5
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 1.8e-128 463.4 398 62.3
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 2.2e-123 446.4 404 57.9
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 3.3e-119 432.6 374 62.6
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.6e-118 430.3 520 50.2
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.1e-114 417.5 294 76.5
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.5e-114 415.2 441 57.6
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 2.3e-112 409.8 374 60.2
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 5.1e-112 408.7 332 69.6
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 8.2e-110 401.4 334 66.5
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 2.4e-109 399.8 404 58.7
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 5.3e-109 398.7 425 56.0
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 5.7e-103 378.6 403 52.9
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.1e-98 364.4 389 57.8
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.8e-94 349.7 405 49.1
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.8e-94 349.7 405 49.1
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 1.6e-92 344.0 398 51.0
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 7.0e-85 318.5 407 45.7
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.4e-80 304.3 390 49.5
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 7.0e-77 292.0 203 78.8
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 3.4e-71 273.1 348 50.0
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 1.2e-60 238.0 306 48.4
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 2.5e-58 230.3 265 54.3
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 1.1e-56 224.9 424 37.7
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.2e-53 211.8 139 81.3
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.0e-44 182.6 139 73.4
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.1e-32 145.2 102 72.5
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 8.4e-30 135.6 93 76.3
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.1e-26 125.2 73 87.7
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 9.6e-26 122.1 128 53.9
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 6.9e-24 115.9 115 51.3
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 1.7e-22 111.3 69 85.5
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 6.4e-22 109.4 417 27.8
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.2e-21 107.1 181 43.1
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.3e-19 101.7 84 67.9
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 1.5e-18 98.2 427 27.9
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 8.1e-17 92.4 60 70.0
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.1e-16 90.5 68 63.2
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 8.4e-14 82.4 374 25.7
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 5.1e-11 73.2 248 29.8
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 1.5e-07 61.6 424 23.1
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 5.8e-07 59.7 34 79.4


User provided reference genes

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