Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016083 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 1.9e-297 1025.8 858 100.0
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 2.4e-175 620.2 938 75.8
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 3.0e-173 613.2 938 75.6
TWI38G2031 Tripterygium wilfordii HOM05D007128 ORTHO05D009059 2.7e-113 414.1 482 54.4
Rhsim02G0072100 Rhododendron simsii HOM05D007128 ORTHO05D009059 8.6e-112 409.1 936 65.1
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 6.4e-107 392.9 892 60.7
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 1.7e-104 384.8 365 62.2
Dinv22679 Davidia involucrata HOM05D007128 ORTHO05D009059 2.3e-104 384.4 485 53.6
GSVIVG01013571001 Vitis vinifera HOM05D007128 ORTHO05D009059 1.8e-101 374.8 943 59.5
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 1.2e-94 352.1 949 60.1
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 3.1e-93 347.4 949 59.7
Actinidia11313 Actinidia chinensis HOM05D007128 ORTHO05D009059 6.8e-93 346.3 941 63.5
Hund13263 Selenicereus undatus HOM05D007128 ORTHO05D000105 7.1e-90 336.3 412 52.4
Gohir.A02G014400 Gossypium hirsutum HOM05D007128 ORTHO05D009059 3.3e-87 327.4 465 49.9
CiPaw.01G104100 Carya illinoinensis HOM05D007128 ORTHO05D009059 7.3e-87 326.2 924 59.6
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 3.8e-83 313.9 911 59.1
MD04G1034700 Malus domestica HOM05D007128 ORTHO05D009059 1.9e-82 311.6 945 58.8
Ciclev10018682m.g Citrus clementina HOM05D007128 ORTHO05D009059 4.6e-81 307.0 448 47.3
Atru.chr3.1624 Acer truncatum HOM05D007128 ORTHO05D009059 3.0e-80 304.3 481 47.2
CiPaw.01G097300 Carya illinoinensis HOM05D007128 ORTHO05D009059 1.5e-79 302.0 950 58.3
Nn5g27627 Nelumbo nucifera HOM05D007128 ORTHO05D009059 1.9e-79 301.6 948 57.1
Manes.14G160600 Manihot esculenta HOM05D007128 ORTHO05D009059 2.1e-78 298.1 946 57.4
Oeu061587.1 Olea europaea HOM05D007128 ORTHO05D009059 3.6e-78 297.4 443 48.1
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 4.7e-78 297.0 885 35.4
Prupe.1G186300 Prunus persica HOM05D007128 ORTHO05D009059 1.8e-77 295.0 906 58.8
RcHm_v2.0_Chr4g0408411 Rosa chinensis HOM05D007128 ORTHO05D009059 1.8e-77 295.0 893 58.9
QL10p046158 Quercus lobata HOM05D007128 ORTHO05D009059 6.9e-77 293.1 939 58.4
HanXRQChr16g0502661 Helianthus annuus HOM05D007128 ORTHO05D009059 1.2e-76 292.4 475 46.3
Lj6C70T2 Lonicera japonica HOM05D007128 ORTHO05D009059 2.4e-74 284.6 849 55.0
FAN17G2288 Fragaria x ananassa HOM05D007128 ORTHO05D009059 6.0e-73 280.0 900 59.4
Sabra07G0100100 Salix brachista HOM05D007128 ORTHO05D009059 2.3e-72 278.1 912 55.9
PGR083G1825 Punica granatum HOM05D007128 ORTHO05D009059 5.1e-72 276.9 950 55.7
Sc16g0009730 Simmondsia chinensis HOM05D007128 ORTHO05D009059 8.7e-72 276.2 463 44.9
SalBow6G5229 Salvia bowleyana HOM05D007128 ORTHO05D009059 1.1e-71 275.8 931 54.1
COL.COLO4_24378 Corchorus olitorius HOM05D007128 ORTHO05D009059 2.5e-71 274.6 445 45.4
FAN07G2448 Fragaria x ananassa HOM05D007128 ORTHO05D009059 9.6e-71 272.7 903 56.1
FvH4_4g11500 Fragaria vesca HOM05D007128 ORTHO05D009059 2.8e-70 271.2 927 57.7
Duzib151G0548 Durio zibethinus HOM05D007128 ORTHO05D009059 3.6e-70 270.8 449 46.1
FAN22G1219 Fragaria x ananassa HOM05D007128 ORTHO05D009059 3.6e-70 270.8 900 58.9
CDE07G1249 Ceratophyllum demersum HOM05D007128 ORTHO05D009059 4.8e-70 270.4 902 58.4
Phvul.002G041300 Phaseolus vulgaris HOM05D007128 ORTHO05D009059 4.8e-70 270.4 852 59.6
CANSAT78G2527 Cannabis sativa HOM05D007128 ORTHO05D009059 1.1e-69 269.2 905 56.9
Gorai.005G019500 Gossypium raimondii HOM05D007128 ORTHO05D009059 1.1e-69 269.2 465 45.4
Potri.007G123600 Populus trichocarpa HOM05D007128 ORTHO05D009059 1.1e-69 269.2 909 57.4
Cc03_g13390 Coffea canephora HOM05D007128 ORTHO05D009059 1.8e-69 268.5 893 59.1
AUR62000973 Chenopodium quinoa HOM05D007128 ORTHO05D009059 2.0e-68 265.0 481 42.2
Sed0021713 Sechium edule HOM05D007128 ORTHO05D009059 1.7e-67 261.9 888 58.8
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 3.8e-67 260.8 439 41.7
Gohir.A02G014300 Gossypium hirsutum HOM05D007128 ORTHO05D009059 4.2e-66 257.3 433 44.8
THA.LOC104826248 Tarenaya hassleriana HOM05D007128 ORTHO05D009059 2.7e-65 254.6 482 42.7
TPR.G18647 Trifolium pratense HOM05D007128 ORTHO05D009059 2.3e-64 251.5 895 56.2
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 5.1e-64 250.4 451 44.8
VMungo1309G2539 Vigna mungo HOM05D007128 ORTHO05D009059 2.5e-63 248.1 886 55.5
PGSC0003DMG400016718 Solanum tuberosum HOM05D007128 ORTHO05D009059 3.3e-63 247.7 470 42.3
QL10p044765 Quercus lobata HOM05D007128 ORTHO05D009059 5.6e-63 246.9 652 41.1
CsaV3_6G003710 Cucumis sativus L. HOM05D007128 ORTHO05D009059 1.3e-62 245.7 911 56.9
Lalb_Chr09g0320101 Lupinus albus HOM05D007128 ORTHO05D009059 2.1e-62 245.0 910 55.1
Sopen02g025900 Solanum pennellii HOM05D007128 ORTHO05D009059 2.1e-62 245.0 419 43.7
Solyc02g081250.3 Solanum lycopersicum HOM05D000189 ORTHO05D009059 5.3e-61 240.4 466 40.8
MELO3C011605.2 Cucumis melo HOM05D007128 ORTHO05D009059 1.2e-60 239.2 911 56.6
EL10Ac4g09187 Beta vulgaris HOM05D007128 ORTHO05D009059 7.6e-60 236.5 927 50.6
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 1.3e-59 235.7 323 45.5
Glyma.11G009000 Glycine max HOM05D007128 ORTHO05D009059 3.8e-59 234.2 886 57.9
Psat2g189360 Pisum sativum HOM05D007128 ORTHO05D009059 5.5e-58 230.3 887 55.4
LjContig00222g0017157 Lotus japonicus HOM05D007128 ORTHO05D009059 1.0e-56 226.1 885 57.4
QL10p045743 Quercus lobata HOM05D007128 ORTHO05D009059 3.9e-56 224.2 242 51.7
MBI11_g35037_MAGBIO Magnolia biondii HOM05D007128 ORTHO05D009059 6.7e-56 223.4 915 57.3
AUR62004993 Chenopodium quinoa HOM05D007128 ORTHO05D009059 1.1e-55 222.6 427 41.9
arahy.Tifrunner.gnm1.ann1.Q2Q9DA Arachis hypogaea HOM05D007128 ORTHO05D009059 4.3e-55 220.7 896 53.6
SGA_v2.0_scaffold31G12566 Striga asiatica HOM05D007128 ORTHO05D009059 4.3e-55 220.7 440 41.8
CAN.G1681.10 Capsicum annuum HOM05D007128 ORTHO05D009059 2.8e-54 218.0 918 51.7
Ca_24431_v3 Cicer arietinum L. HOM05D007128 ORTHO05D009059 2.8e-54 218.0 897 55.1
Zm00001eb078990 Zea mays HOM05D007128 ORTHO05D009059 2.8e-54 218.0 366 44.5
arahy.Tifrunner.gnm1.ann1.IE5CWM Arachis hypogaea HOM05D007128 ORTHO05D009059 3.7e-54 217.6 436 39.7
Migut.N00468 Erythranthe guttata HOM05D007128 ORTHO05D009059 3.7e-54 217.6 439 39.2
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 6.2e-54 216.9 299 43.5
PSO566G0116 Papaver somniferum HOM05D007128 ORTHO05D009059 1.1e-53 216.1 904 53.7
Medtr5g007250 Medicago truncatula HOM05D007128 ORTHO05D009059 1.8e-53 215.3 889 55.5
ATR0743G184 Amborella trichopoda HOM05D007128 ORTHO05D009059 2.6e-52 211.5 452 38.3
PSO782G4906 Papaver somniferum HOM05D007128 ORTHO05D009059 2.2e-51 208.4 904 55.1
Aqoxy2G03122 Aquilegia oxysepala HOM05D007128 ORTHO05D009059 9.3e-50 203.0 806 56.3
ECA248G2224 Erigeron canadensis HOM05D007128 ORTHO05D009059 1.2e-49 202.6 707 59.3
Aa31LG1G7750 Aethionema arabicum HOM05D007128 ORTHO05D009059 1.0e-48 199.5 482 37.6
CARHR006390 Cardamine hirsuta HOM05D007128 ORTHO05D009059 3.0e-48 198.0 480 37.5
SHI23551 Sapria himalayana HOM05D007128 ORTHO05D009059 8.7e-48 196.4 477 37.1
A10p05290 Brassica napus HOM05D007128 ORTHO05D009059 3.3e-47 194.5 437 38.2
Thhalv10006683m.g Eutrema salsugineum HOM05D007128 ORTHO05D009059 4.8e-46 190.7 477 36.9
AL1G16720 Arabidopsis lyrata HOM05D007128 ORTHO05D009059 1.4e-45 189.1 484 36.6
AT1G06710 Arabidopsis thaliana HOM05D007128 ORTHO05D009059 1.4e-45 189.1 466 36.7
BraA10t42794Z Brassica rapa HOM05D007128 ORTHO05D009059 2.4e-45 188.3 437 37.5
Carub.0001s0604 Capsella rubella HOM05D007128 ORTHO05D009059 4.1e-45 187.6 436 37.6
BolC5t29261H Brassica oleracea HOM05D007128 ORTHO05D009059 5.3e-45 187.2 438 37.9
Sp1g05440 Schrenkiella parvula HOM05D007128 ORTHO05D009059 2.6e-44 184.9 436 37.8
C05p04890 Brassica napus HOM05D007128 ORTHO05D009059 3.4e-44 184.5 438 37.7
QL10p045737 Quercus lobata HOM05D007128 ORTHO05D009059 1.2e-33 149.4 101 70.3
Eucgr.L00553 Eucalyptus grandis HOM05D007128 ORTHO05D009059 3.9e-32 144.4 245 46.5
Eucgr.A00240 Eucalyptus grandis HOM05D007128 ORTHO05D009059 2.0e-31 142.1 664 63.6
Gohir.D02G016000 Gossypium hirsutum HOM05D007128 ORTHO05D009059 2.6e-31 141.7 248 46.4
QL10p046885 Quercus lobata HOM05D007128 ORTHO05D009059 9.7e-31 139.8 82 80.5
Glyma.01G233900 Glycine max HOM05D007128 ORTHO05D009059 8.2e-30 136.7 102 63.7
Os04g0488500 Oryza sativa ssp. japonica HOM05D007128 ORTHO05D009059 8.2e-30 136.7 240 46.7
Thecc.04G183700 Theobroma cacao HOM05D007128 ORTHO05D009059 9.7e-23 113.2 174 52.3
BcaNung05934 Brassica carinata HOM05D000703 ORTHO05D000633 2.8e-22 111.7 105 51.4
HPP92_007610 Vanilla planifolia HOM05D007128 ORTHO05D009059 3.2e-18 98.2 80 58.8
Nitab4.5_0000286g0010 Nicotiana tabacum HOM05D007128 ORTHO05D009059 4.2e-18 97.8 85 51.8
Gorai.005G019400 Gossypium raimondii HOM05D007128 ORTHO05D009059 2.7e-17 95.1 71 56.3
Gohir.D02G015950 Gossypium hirsutum HOM05D007128 ORTHO05D009059 5.0e-11 74.3 85 41.2
SEGI_08126 Sequoiadendron giganteum HOM05D007128 ORTHO05D009059 3.2e-10 71.6 203 38.9
SEGI_11222 Sequoiadendron giganteum HOM05D007128 ORTHO05D009059 1.6e-09 69.3 132 34.8


User provided reference genes

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