Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016059 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 2.3e-111 405.6 212 100.0
CiPaw.06G105600 Carya illinoinensis HOM05D007269 ORTHO05D008531 5.0e-37 158.7 245 43.3
Potri.001G059800 Populus trichocarpa HOM05D007269 ORTHO05D008531 8.5e-37 157.9 220 48.2
QL03p051584 Quercus lobata HOM05D007269 ORTHO05D008531 1.6e-35 153.7 244 43.4
CSS0011599 Camellia sinensis var. sinensis HOM05D007269 ORTHO05D008531 8.8e-34 147.9 219 50.2
CiPaw.05G106700 Carya illinoinensis HOM05D007269 ORTHO05D008531 2.4e-31 139.8 243 41.6
Thecc.02G201200 Theobroma cacao HOM05D007269 ORTHO05D008531 2.4e-31 139.8 251 41.4
TAR374G0918 Trochodendron aralioides HOM05D007269 ORTHO05D008531 9.1e-31 137.9 153 52.3
Sabra03G0123300 Salix brachista HOM05D007269 ORTHO05D008531 2.2e-29 133.3 220 44.1
MSTRG.7284 Avicennia marina HOM05D007269 ORTHO05D008531 6.5e-29 131.7 230 42.6
Manes.12G008000 Manihot esculenta HOM05D007269 ORTHO05D008531 8.5e-29 131.3 220 45.9
Manes.13G008500 Manihot esculenta HOM05D007269 ORTHO05D008531 4.2e-28 129.0 227 44.9
Potri.015G099800 Populus trichocarpa HOM05D007269 ORTHO05D008531 1.6e-27 127.1 214 44.9
Aqoxy3G01626 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 2.7e-27 126.3 228 41.7
Aqoxy5G03286 Aquilegia oxysepala HOM05D007269 ORTHO05D008531 2.0e-25 120.2 210 43.3
CANSAT01G1989 Cannabis sativa HOM05D007269 ORTHO05D008531 3.4e-25 119.4 247 41.3
PGR119G1209 Punica granatum HOM05D007269 ORTHO05D008531 4.4e-25 119.0 215 44.2
Nn4g22252 Nelumbo nucifera HOM05D007269 ORTHO05D008531 7.5e-25 118.2 211 40.8
RcHm_v2.0_Chr4g0429751 Rosa chinensis HOM05D007269 ORTHO05D008531 7.5e-25 118.2 236 39.8
Ciclev10032833m.g Citrus clementina HOM05D007269 ORTHO05D008531 3.7e-24 115.9 200 44.0
Sabra12G0074700 Salix brachista HOM05D001095 ORTHO05D000976 3.7e-24 115.9 209 44.0
Sabra15G0120500 Salix brachista HOM05D007269 ORTHO05D008531 8.3e-24 114.8 205 43.9
Cc11_g17250 Coffea canephora HOM05D007269 ORTHO05D008531 1.1e-23 114.4 240 40.8
TAR622G0366 Trochodendron aralioides HOM05D007269 ORTHO05D008531 4.1e-23 112.5 179 46.4
FvH4_4g23360 Fragaria vesca HOM05D007269 ORTHO05D008531 7.0e-23 111.7 246 37.4
Potri.012G101800 Populus trichocarpa HOM05D007269 ORTHO05D008531 9.1e-23 111.3 209 42.1
Potri.003G168200 Populus trichocarpa HOM05D007269 ORTHO05D008531 1.2e-22 110.9 148 48.0
Prupe.1G222200 Prunus persica HOM05D007269 ORTHO05D008531 2.0e-22 110.2 237 35.9
ATR0582G094 Amborella trichopoda HOM05D007269 ORTHO05D008531 3.5e-22 109.4 206 41.7
Nn3g16393 Nelumbo nucifera HOM05D007269 ORTHO05D008531 4.5e-22 109.0 212 41.0
MD16G1123500 Malus domestica HOM05D007269 ORTHO05D008531 1.3e-21 107.5 239 38.9
Ciclev10032794m.g Citrus clementina HOM05D007269 ORTHO05D008531 2.9e-21 106.3 215 36.3
Duzib084G1105 Durio zibethinus HOM05D007269 ORTHO05D008531 6.5e-21 105.1 215 40.5
Oeu001328.1 Olea europaea HOM05D007269 ORTHO05D008531 8.5e-21 104.8 274 36.1
Manes.14G048800 Manihot esculenta HOM05D007269 ORTHO05D008531 1.1e-20 104.4 214 41.1
Oeu001326.1 Olea europaea HOM05D007269 ORTHO05D008531 3.2e-20 102.8 211 39.3
Oeu001327.1 Olea europaea HOM05D007269 ORTHO05D008531 3.2e-20 102.8 211 39.3
Rhsim12G0023500 Rhododendron simsii HOM05D007269 ORTHO05D008531 3.2e-20 102.8 169 43.8
Thecc.03G133000 Theobroma cacao HOM05D007269 ORTHO05D008531 3.2e-20 102.8 213 40.4
COL.COLO4_36213 Corchorus olitorius HOM05D007269 ORTHO05D008531 7.2e-20 101.7 219 40.6
Atru.chr6.1845 Acer truncatum HOM05D007269 ORTHO05D008531 1.6e-19 100.5 206 40.3
FAN12G4201 Fragaria x ananassa HOM05D007269 ORTHO05D008531 4.7e-19 99.0 235 36.2
QL10p002347 Quercus lobata HOM05D007269 ORTHO05D008531 4.7e-19 99.0 207 38.2
MBI07_g46909_MAGBIO Magnolia biondii HOM05D007269 ORTHO05D008531 1.8e-18 97.1 241 35.7
Migut.M01219 Erythranthe guttata HOM05D007269 ORTHO05D008531 3.0e-18 96.3 231 39.8
Duzib068G0517 Durio zibethinus HOM05D007269 ORTHO05D008531 1.5e-17 94.0 211 36.5
FAN17G1902 Fragaria x ananassa HOM05D007269 ORTHO05D008531 2.0e-17 93.6 225 36.9
Gorai.002G023300 Gossypium raimondii HOM05D007269 ORTHO05D008531 2.6e-17 93.2 258 35.3
Lalb_Chr07g0183561 Lupinus albus HOM05D007269 ORTHO05D008531 5.7e-17 92.0 213 38.0
Gohir.D01G020800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 9.8e-17 91.3 262 33.6
Cfa009391 Carpinus fangiana HOM05D007269 ORTHO05D008531 2.2e-16 90.1 170 38.2
CiPaw.11G004900 Carya illinoinensis HOM05D007269 ORTHO05D008531 2.2e-16 90.1 212 42.0
Migut.K01007 Erythranthe guttata HOM05D007269 ORTHO05D008531 2.2e-16 90.1 233 37.3
Gohir.A01G022800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 2.2e-16 90.1 278 33.5
PSO017G6998 Papaver somniferum HOM05D007269 ORTHO05D008531 3.7e-16 89.4 215 38.6
Phvul.002G285300 Phaseolus vulgaris HOM05D007269 ORTHO05D008531 6.3e-16 88.6 221 36.2
CDE05G2305 Ceratophyllum demersum HOM05D007269 ORTHO05D008531 3.1e-15 86.3 201 34.8
Oeu012652.1 Olea europaea HOM05D007269 ORTHO05D008531 9.2e-15 84.7 198 34.8
MD06G1137900 Malus domestica HOM05D007269 ORTHO05D008531 1.6e-14 84.0 214 36.4
Cpa.g.sc4.165 Carica papaya HOM05D007269 ORTHO05D008531 3.5e-14 82.8 214 36.0
Nitab4.5_0002530g0020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 3.5e-14 82.8 231 35.1
Lalb_Chr13g0297191 Lupinus albus HOM05D007269 ORTHO05D008531 5.9e-14 82.0 207 34.3
Lj4g0016206 Lotus japonicus HOM05D007269 ORTHO05D008531 2.3e-13 80.1 217 35.9
Nitab4.5_0000021g1020 Nicotiana tabacum HOM05D007269 ORTHO05D008531 3.8e-13 79.3 231 34.2
Prupe.5G148200 Prunus persica HOM05D007269 ORTHO05D008531 8.6e-13 78.2 218 33.5
HanXRQChr05g0153821 Helianthus annuus HOM05D007269 ORTHO05D008531 1.5e-12 77.4 230 33.9
Lsat_1_v5_gn_4_82360 Lactuca sativa HOM05D007269 ORTHO05D008531 1.9e-12 77.0 208 34.1
Gohir.D12G192900 Gossypium hirsutum HOM05D007269 ORTHO05D008531 3.3e-12 76.3 208 36.1
Haze_07172 Corylus avellana HOM05D007269 ORTHO05D008531 4.3e-12 75.9 177 38.4
Gorai.008G207700 Gossypium raimondii HOM05D007269 ORTHO05D008531 4.3e-12 75.9 202 35.1
HanXRQChr09g0273431 Helianthus annuus HOM05D007269 ORTHO05D008531 7.3e-12 75.1 201 33.3
Psat7g036960 Pisum sativum HOM05D007269 ORTHO05D008531 9.5e-12 74.7 220 35.0
HanXRQChr08g0236471 Helianthus annuus HOM05D007269 ORTHO05D008531 3.6e-11 72.8 230 32.2
Gohir.A12G190800 Gossypium hirsutum HOM05D007269 ORTHO05D008531 8.0e-11 71.6 202 34.7
Cfa018768 Carpinus fangiana HOM05D007269 ORTHO05D008531 1.0e-10 71.2 171 37.4
CsaV3_6G008060 Cucumis sativus L. HOM05D026927 ORTHO05D008531 1.4e-10 70.9 211 37.0
Sc22g0003750 Simmondsia chinensis HOM05D007269 ORTHO05D008531 3.0e-10 69.7 205 30.7
TAR629G3154 Trochodendron aralioides HOM05D007269 ORTHO05D008531 6.8e-10 68.6 147 40.1
MELO3C022330.2 Cucumis melo HOM05D026927 ORTHO05D008531 1.2e-09 67.8 213 35.2
VMungo0251G2992 Vigna mungo HOM05D031312 ORTHO05D008531 1.5e-09 67.4 164 36.6
TPR.G28777 Trifolium pratense HOM05D007269 ORTHO05D008531 2.0e-09 67.0 220 33.6
Solyc03g097430.1 Solanum lycopersicum HOM05D007269 ORTHO05D008531 2.6e-09 66.6 211 32.7
MD14G1153300 Malus domestica HOM05D007269 ORTHO05D008531 3.4e-09 66.2 216 32.4
Os12g0460100 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 3.4e-09 66.2 205 30.7
RcHm_v2.0_Chr7g0189701 Rosa chinensis HOM05D007269 ORTHO05D008531 9.8e-09 64.7 230 30.9
PSO017G1627 Papaver somniferum HOM05D007269 ORTHO05D008531 1.3e-08 64.3 165 35.8
Sopen03g028190 Solanum pennellii HOM05D007269 ORTHO05D008531 1.3e-08 64.3 208 31.2
Sabra01G0042900 Salix brachista HOM05D007269 ORTHO05D008531 2.2e-08 63.5 117 41.9
ClCG06G002000 Citrullus lanatus HOM05D026927 ORTHO05D008531 4.9e-08 62.4 143 40.6
PGSC0003DMG400026484 Solanum tuberosum HOM05D007269 ORTHO05D008531 4.9e-08 62.4 221 29.4
Medtr8g096640 Medicago truncatula HOM05D007269 ORTHO05D008531 8.3e-08 61.6 208 33.7
DCAR_021638 Daucus carota HOM05D007269 ORTHO05D008531 2.4e-07 60.1 236 28.0
FAN28G2669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 3.2e-07 59.7 218 33.5
FAN08G0669 Fragaria x ananassa HOM05D007269 ORTHO05D008531 4.1e-07 59.3 220 33.2
Dinv23173 Davidia involucrata HOM05D007269 ORTHO05D008531 7.0e-07 58.5 160 35.6
FvH4_5g08680 Fragaria vesca HOM05D007269 ORTHO05D008531 1.2e-06 57.8 219 33.3
FAN18G2199 Fragaria x ananassa HOM05D007269 ORTHO05D008531 1.2e-06 57.8 219 33.3
CAN.G732.21 Capsicum annuum HOM05D007269 ORTHO05D008531 2.0e-06 57.0 223 29.1
FAN13G1779 Fragaria x ananassa HOM05D007269 ORTHO05D008531 2.7e-06 56.6 220 31.8
FAN06G3947 Fragaria x ananassa HOM05D007269 ORTHO05D008531 7.8e-06 55.1 214 32.7
Os12g0460400 Oryza sativa ssp. japonica HOM05D007269 ORTHO05D008531 7.8e-06 55.1 232 29.7


User provided reference genes

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