Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016058 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 3.4e-90 335.1 184 100.0
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 9.2e-88 327.0 184 92.9
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 2.2e-25 119.8 195 40.0
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 8.5e-25 117.9 194 40.2
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 9.4e-24 114.4 194 40.7
Rhsim04G0182300 Rhododendron simsii HOM05D007526 ORTHO05D009350 1.0e-22 110.9 189 44.4
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 5.7e-21 105.1 195 37.4
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 9.7e-21 104.4 204 36.3
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 3.7e-20 102.4 181 38.7
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 3.7e-20 102.4 199 44.2
TAR365G0977 Trochodendron aralioides HOM05D007526 ORTHO05D009350 4.8e-20 102.1 193 38.3
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 6.3e-20 101.7 206 36.4
Cc03_g05540 Coffea canephora HOM05D007526 ORTHO05D009350 8.2e-20 101.3 203 40.4
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 1.8e-19 100.1 205 36.6
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 3.1e-19 99.4 194 38.7
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 3.1e-19 99.4 200 34.5
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 4.1e-19 99.0 200 37.0
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 5.3e-19 98.6 200 37.0
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 5.3e-19 98.6 203 33.5
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 6.9e-19 98.2 199 35.7
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 1.2e-18 97.4 197 38.1
TAR636G0759 Trochodendron aralioides HOM05D007526 ORTHO05D009350 1.2e-18 97.4 189 39.2
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 1.2e-18 97.4 201 35.8
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.5e-18 97.1 203 33.5
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 1.5e-18 97.1 208 37.5
MBI07_g16245_MAGBIO Magnolia biondii HOM05D007526 ORTHO05D009350 2.6e-18 96.3 202 37.6
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 4.5e-18 95.5 196 35.2
Oeu055231.1 Olea europaea HOM05D007526 ORTHO05D009350 4.5e-18 95.5 206 40.3
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 5.9e-18 95.1 219 35.2
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 1.3e-17 94.0 205 36.1
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 1.3e-17 94.0 221 34.8
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 2.9e-17 92.8 206 34.0
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 3.8e-17 92.4 194 35.1
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 1.9e-16 90.1 220 34.1
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 2.5e-16 89.7 218 34.9
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 2.5e-16 89.7 198 34.8
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 1.2e-15 87.4 205 35.6
Aqoxy5G00249 Aquilegia oxysepala HOM05D007526 ORTHO05D009350 1.6e-15 87.0 209 34.9
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 2.1e-15 86.7 208 34.6
Sopen09g033060 Solanum pennellii HOM05D007526 ORTHO05D009350 3.6e-15 85.9 230 33.0
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 4.7e-15 85.5 208 34.6
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 4.7e-15 85.5 245 31.8
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 6.1e-15 85.1 230 33.5
EL10Ac3g05005 Beta vulgaris HOM05D007526 ORTHO05D009350 7.9e-15 84.7 214 36.4
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 7.9e-15 84.7 196 36.2
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 7.9e-15 84.7 206 32.5
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 1.4e-14 84.0 198 33.8
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 1.4e-14 84.0 195 36.4
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.8e-14 83.6 194 34.5
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 3.0e-14 82.8 209 33.0
Ah.04g155760 Amaranthus hybridus HOM05D007526 ORTHO05D009350 5.1e-14 82.0 210 36.7
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 8.8e-14 81.3 202 33.2
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 1.1e-13 80.9 207 33.3
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 2.6e-13 79.7 207 32.9
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 2.6e-13 79.7 228 33.3
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 2.6e-13 79.7 192 32.3
Nn1g02762 Nelumbo nucifera HOM05D007526 ORTHO05D009350 3.3e-13 79.3 231 33.3
PGSC0003DMG400017266 Solanum tuberosum HOM05D007526 ORTHO05D009350 3.3e-13 79.3 232 31.0
AUR62015571 Chenopodium quinoa HOM05D007526 ORTHO05D009350 5.7e-13 78.6 210 35.7
Dinv27054 Davidia involucrata HOM05D007526 ORTHO05D009350 5.7e-13 78.6 99 51.5
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 9.7e-13 77.8 207 30.0
Nn3g19655 Nelumbo nucifera HOM05D007526 ORTHO05D009350 1.3e-12 77.4 232 32.3
Hma1.2p1_0267F.1_g107260 Hydrangea macrophylla HOM05D007526 ORTHO05D009350 3.7e-12 75.9 85 52.9
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 8.2e-12 74.7 184 33.2
Actinidia01843 Actinidia chinensis HOM05D007526 ORTHO05D009350 1.4e-11 73.9 81 54.3
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 1.4e-11 73.9 113 41.6
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 1.8e-11 73.6 211 29.4
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 5.3e-11 72.0 203 29.1
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 7.0e-11 71.6 205 29.3
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.2e-10 70.9 248 30.2
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 2.0e-10 70.1 201 28.4
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 3.5e-10 69.3 208 28.8
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 3.5e-10 69.3 198 30.3
Potri.005G224200 Populus trichocarpa HOM05D008367 ORTHO05D010529 7.7e-10 68.2 188 31.9
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 1.3e-09 67.4 208 28.8
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 1.7e-09 67.0 196 32.1
Hma1.2p1_0273F.1_g109700 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 2.2e-09 66.6 203 31.5
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 3.8e-09 65.9 208 28.4
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 3.8e-09 65.9 208 28.4
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 6.5e-09 65.1 195 28.7
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 8.5e-09 64.7 194 30.4
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 1.5e-08 63.9 214 29.4
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.9e-08 63.5 189 27.5
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 5.5e-08 62.0 193 29.5
Cc01_g18350 Coffea canephora HOM05D008367 ORTHO05D010529 7.2e-08 61.6 200 28.5
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 7.2e-08 61.6 205 27.8
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 9.4e-08 61.2 175 26.9
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 1.2e-07 60.8 190 28.4
Ciclev10022407m.g Citrus clementina HOM05D008367 ORTHO05D010529 2.1e-07 60.1 188 29.3
Lsat_1_v5_gn_3_120620 Lactuca sativa HOM05D064852 ORTHO05D009350 2.1e-07 60.1 81 44.4
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 2.7e-07 59.7 222 24.8
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 8.0e-07 58.2 207 26.1
Migut.G00517 Erythranthe guttata HOM05D007526 ORTHO05D009350 8.0e-07 58.2 63 54.0
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 1.4e-06 57.4 187 27.8
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 1.4e-06 57.4 188 29.3
Haze_24631 Corylus avellana HOM05D008367 ORTHO05D010529 1.8e-06 57.0 162 29.6
Actinidia25788 Actinidia chinensis HOM05D008367 ORTHO05D010529 2.3e-06 56.6 199 31.7
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 2.3e-06 56.6 189 25.9
CDE02G1593 Ceratophyllum demersum HOM05D045424 ORTHO05D009350 2.3e-06 56.6 206 28.6
Duzib138G1787 Durio zibethinus HOM05D008367 ORTHO05D010529 2.3e-06 56.6 189 32.3
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.3e-06 56.6 194 27.8
QL09p038772 Quercus lobata HOM05D008367 ORTHO05D010529 2.3e-06 56.6 198 29.3
Hma1.2p1_0576F.1_g182070 Hydrangea macrophylla HOM05D008367 ORTHO05D010529 3.0e-06 56.2 205 28.8
Rhsim01G0263900 Rhododendron simsii HOM05D008367 ORTHO05D010529 3.0e-06 56.2 206 27.7
Cfa002424 Carpinus fangiana HOM05D008367 ORTHO05D010529 4.0e-06 55.8 166 31.3
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 5.2e-06 55.5 96 39.6
Sabra05G0173000 Salix brachista HOM05D008367 ORTHO05D010529 5.2e-06 55.5 186 30.1
Potri.002G038400 Populus trichocarpa HOM05D008367 ORTHO05D010529 8.8e-06 54.7 189 29.6


User provided reference genes

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