Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 9.9e-184 646.7 348 100.0
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.8e-183 644.8 348 99.7
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 1.0e-143 513.8 351 78.9
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.5e-139 500.0 348 79.3
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.3e-135 486.9 351 76.9
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 1.8e-129 466.5 365 74.0
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 6.3e-122 441.4 352 70.7
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 1.1e-121 440.7 352 69.9
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 3.1e-121 439.1 352 69.9
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 5.4e-121 438.3 352 70.2
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 7.0e-121 438.0 405 64.9
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 9.1e-121 437.6 352 70.2
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.6e-120 436.8 353 67.1
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 1.7e-119 433.3 352 69.9
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.2e-119 433.0 352 70.7
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.2e-119 433.0 352 70.7
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 8.5e-119 431.0 352 69.0
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 1.9e-118 429.9 351 70.1
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 3.2e-118 429.1 351 68.1
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 7.2e-118 427.9 353 69.4
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.2e-117 427.2 351 69.2
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 2.7e-117 426.0 353 69.1
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 6.1e-117 424.9 351 68.9
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 4.0e-116 422.2 362 67.1
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 5.2e-116 421.8 351 68.7
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 6.8e-116 421.4 353 68.6
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 8.8e-116 421.0 351 68.7
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 7.5e-115 417.9 352 67.9
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 4.9e-114 415.2 351 68.9
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 8.3e-114 414.5 353 65.7
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 2.0e-112 409.8 353 66.3
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.0e-112 409.8 352 68.5
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 3.5e-112 409.1 352 66.2
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 4.5e-112 408.7 353 68.3
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 1.7e-111 406.8 353 64.9
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.1e-110 404.1 351 64.1
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 2.5e-110 402.9 353 67.1
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 1.2e-109 400.6 354 63.8
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 4.7e-109 398.7 353 63.7
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 1.2e-107 394.0 353 62.6
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.6e-107 392.9 352 64.5
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 3.4e-107 392.5 351 65.2
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.4e-107 392.5 353 62.3
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 2.9e-106 389.4 352 65.1
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 2.9e-106 389.4 354 64.1
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 2.9e-106 389.4 351 64.1
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 3.7e-106 389.0 360 62.2
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 6.4e-106 388.3 352 64.5
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 6.4e-106 388.3 340 65.3
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 6.4e-106 388.3 351 64.4
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 8.3e-106 387.9 345 65.8
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 1.4e-105 387.1 353 63.2
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 9.2e-105 384.4 351 64.1
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 3.5e-104 382.5 356 63.5
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 1.3e-103 380.6 357 62.7
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 1.7e-103 380.2 353 64.0
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 3.0e-103 379.4 349 65.0
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 2.5e-102 376.3 421 55.3
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 5.6e-102 375.2 349 61.6
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 9.5e-102 374.4 355 63.7
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.0e-100 370.9 368 60.3
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 6.8e-100 368.2 348 63.2
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 8.9e-100 367.9 352 63.6
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 4.4e-99 365.5 353 64.6
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.7e-98 363.6 351 61.3
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 8.3e-98 361.3 351 61.0
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 3.2e-97 359.4 351 61.3
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 6.0e-96 355.1 353 59.8
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.0e-95 354.4 351 60.7
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 1.7e-95 353.6 351 60.4
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 1.7e-95 353.6 358 59.8
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 1.1e-94 350.9 342 61.1
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 5.6e-94 348.6 351 59.3
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 4.7e-93 345.5 351 59.8
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.4e-92 344.0 351 59.8
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.8e-92 343.6 366 58.2
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 3.1e-92 342.8 353 60.6
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 4.0e-92 342.4 353 59.5
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 5.2e-92 342.0 351 59.5
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 5.2e-92 342.0 351 59.5
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 8.9e-92 341.3 351 59.5
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 8.9e-92 341.3 351 59.5
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 1.5e-91 340.5 353 59.5
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 3.4e-91 339.3 346 58.4
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 7.5e-91 338.2 353 59.2
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 7.5e-91 338.2 351 59.5
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 2.2e-90 336.7 342 58.2
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 2.9e-90 336.3 354 57.3
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.9e-89 333.6 351 58.1
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 3.0e-87 326.2 375 56.5
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 1.1e-86 324.3 344 56.4
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 2.5e-86 323.2 301 61.5
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 9.5e-86 321.2 380 52.9
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 2.3e-84 316.6 340 57.9
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 4.0e-84 315.8 357 56.3
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 4.4e-83 312.4 353 53.5
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.1e-81 307.8 252 68.7
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 3.1e-68 263.1 354 52.0
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 3.1e-68 263.1 336 51.5
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.0e-63 248.1 201 67.2
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 1.1e-62 244.6 233 62.7
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 4.8e-61 239.2 199 67.8
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 1.4e-60 237.7 340 48.2
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.9e-57 227.3 235 60.9
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 1.4e-52 211.1 229 57.2
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 2.6e-51 206.8 143 75.5
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 3.5e-48 196.4 168 69.0
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 9.0e-44 181.8 200 55.5
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 3.4e-43 179.9 295 41.0
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 1.2e-40 171.4 376 35.4
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 7.9e-40 168.7 236 47.5
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.1e-38 164.9 238 46.2
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.3e-37 161.4 133 66.9
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.5e-33 147.1 308 37.0
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.6e-32 144.4 229 46.3
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 1.0e-31 141.7 235 45.5
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 6.7e-31 139.0 97 77.3
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 3.3e-30 136.7 370 33.2
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 9.7e-30 135.2 114 64.0
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 2.0e-22 110.9 71 80.3
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 2.2e-21 107.5 294 34.0
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 3.7e-21 106.7 316 32.0
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 1.1e-20 105.1 102 61.8
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 2.6e-19 100.5 93 59.1
RcHm_v2.0_Chr2g0163711 Rosa chinensis HOM05D005714 ORTHO05D006812 5.5e-17 92.8 77 67.5
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.2e-14 85.1 96 45.8
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 3.3e-14 83.6 85 56.5
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 9.7e-14 82.0 182 37.4
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 3.1e-12 77.0 124 44.4
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 1.9e-09 67.8 46 78.3
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 4.2e-09 66.6 139 36.7
RcHm_v2.0_Chr2g0163651 Rosa chinensis HOM05D005714 ORTHO05D006812 4.7e-08 63.2 86 47.7
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 6.1e-08 62.8 43 72.1
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 1.8e-07 61.2 121 42.1
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 5.2e-07 59.7 102 45.1
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 5.2e-07 59.7 60 60.0


User provided reference genes

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