Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016016 Camellia sinensis var. sinensis HOM05D007190 ORTHO05D009130 1.7e-105 386.0 189 100.0
CSS0041062 Camellia sinensis var. sinensis HOM05D007190 ORTHO05D009130 8.3e-52 207.6 169 66.9
Rhsim04G0073500 Rhododendron simsii HOM05D007190 ORTHO05D009130 1.4e-46 190.3 169 60.9
Lj3g0015265 Lotus japonicus HOM05D007190 ORTHO05D009130 1.5e-45 186.8 166 59.6
Dinv03920 Davidia involucrata HOM05D007190 ORTHO05D009130 3.4e-45 185.7 169 59.8
CSS0031949 Camellia sinensis var. sinensis HOM05D007190 ORTHO05D009130 1.3e-44 183.7 156 64.7
QL08p041327 Quercus lobata HOM05D007190 ORTHO05D009130 1.3e-44 183.7 167 59.3
Ca_01466_v3 Cicer arietinum L. HOM05D007190 ORTHO05D009130 2.2e-44 183.0 166 58.4
Haze_13342 Corylus avellana HOM05D007190 ORTHO05D009130 2.2e-44 183.0 177 57.1
Actinidia30444 Actinidia chinensis HOM05D007190 ORTHO05D009130 3.8e-44 182.2 165 60.6
GSVIVG01020671001 Vitis vinifera HOM05D007190 ORTHO05D009130 3.8e-44 182.2 169 58.6
CiPaw.03G185700 Carya illinoinensis HOM05D007190 ORTHO05D009130 4.9e-44 181.8 167 58.7
ClCG09G011360 Citrullus lanatus HOM05D007190 ORTHO05D009130 1.1e-43 180.6 166 59.0
Lalb_Chr14g0367371 Lupinus albus HOM05D007190 ORTHO05D009130 1.4e-43 180.3 166 56.6
Cfa014712 Carpinus fangiana HOM05D007190 ORTHO05D009130 1.9e-43 179.9 167 58.1
CsaV3_6G037600 Cucumis sativus L. HOM05D007190 ORTHO05D009130 1.9e-43 179.9 166 59.0
Lj1A689G21 Lonicera japonica HOM05D007190 ORTHO05D009130 2.4e-43 179.5 142 64.1
Prupe.3G124300 Prunus persica HOM05D007190 ORTHO05D009130 2.4e-43 179.5 165 59.4
Sed0016786 Sechium edule HOM05D007190 ORTHO05D009130 2.4e-43 179.5 166 59.0
MELO3C014352.2 Cucumis melo HOM05D007190 ORTHO05D009130 3.2e-43 179.1 166 58.4
Glyma.12G209200 Glycine max HOM05D007190 ORTHO05D009130 3.2e-43 179.1 166 57.8
Hund07837 Selenicereus undatus HOM05D007190 ORTHO05D009130 3.2e-43 179.1 151 62.3
Cpa.g.sc209.23 Carica papaya HOM05D007190 ORTHO05D009130 4.2e-43 178.7 166 57.8
Peaxi162Scf00241g00919 Petunia axillaris HOM05D007190 ORTHO05D009130 9.2e-43 177.6 148 62.8
Phvul.005G096600 Phaseolus vulgaris HOM05D007190 ORTHO05D009130 9.2e-43 177.6 166 56.6
RcHm_v2.0_Chr2g0129041 Rosa chinensis HOM05D007190 ORTHO05D009130 1.2e-42 177.2 166 57.8
TAR627G0601 Trochodendron aralioides HOM05D007190 ORTHO05D009130 1.2e-42 177.2 165 56.4
FvH4_6g27080 Fragaria vesca HOM05D007190 ORTHO05D009130 2.1e-42 176.4 166 57.2
MD09G1240300 Malus domestica HOM05D007190 ORTHO05D009130 2.1e-42 176.4 166 57.2
Psat5g275520 Pisum sativum HOM05D007190 ORTHO05D009130 2.1e-42 176.4 166 57.2
Cc05_g08090 Coffea canephora HOM05D007190 ORTHO05D009130 2.7e-42 176.0 165 57.6
Thecc.01G243100 Theobroma cacao HOM05D007190 ORTHO05D009130 4.6e-42 175.3 168 57.1
Medtr2g091140 Medicago truncatula HOM05D007190 ORTHO05D009130 7.8e-42 174.5 166 56.6
TWI14G0656 Tripterygium wilfordii HOM05D007190 ORTHO05D009130 1.0e-41 174.1 169 57.4
Nitab4.5_0007774g0060 Nicotiana tabacum HOM05D007190 ORTHO05D009130 1.3e-41 173.7 166 56.0
FAN14G3381 Fragaria x ananassa HOM05D007190 ORTHO05D009130 1.7e-41 173.3 174 55.2
Nitab4.5_0003291g0030 Nicotiana tabacum HOM05D007190 ORTHO05D009130 1.7e-41 173.3 166 56.0
Sabra19G0104200 Salix brachista HOM05D007190 ORTHO05D009130 1.7e-41 173.3 166 56.6
arahy.Tifrunner.gnm1.ann1.Y5LIHD Arachis hypogaea HOM05D007190 ORTHO05D009130 3.0e-41 172.6 166 54.8
Duzib264G1175 Durio zibethinus HOM05D007190 ORTHO05D009130 3.0e-41 172.6 168 56.0
Potri.019G090600 Populus trichocarpa HOM05D007190 ORTHO05D009130 3.0e-41 172.6 166 56.0
EL10Ac9g20875 Beta vulgaris HOM05D007190 ORTHO05D009130 3.9e-41 172.2 165 56.4
CANSAT64G0866 Cannabis sativa HOM05D007190 ORTHO05D009130 3.9e-41 172.2 166 57.2
SGA_v2.0_scaffold9G04917 Striga asiatica HOM05D007190 ORTHO05D009130 6.6e-41 171.4 165 54.5
Atru.chr6.2820 Acer truncatum HOM05D007190 ORTHO05D009130 8.7e-41 171.0 164 56.7
AUR62042313 Chenopodium quinoa HOM05D007190 ORTHO05D009130 8.7e-41 171.0 165 55.2
Solyc10g008060.4 Solanum lycopersicum HOM05D007190 ORTHO05D009130 1.5e-40 170.2 166 55.4
PSO675G8657 Papaver somniferum HOM05D007190 ORTHO05D009130 1.9e-40 169.9 171 53.8
Gohir.A09G002200 Gossypium hirsutum HOM05D007190 ORTHO05D009130 3.3e-40 169.1 168 54.8
Sopen10g003930 Solanum pennellii HOM05D007190 ORTHO05D009130 3.3e-40 169.1 166 54.8
PGR142G3516 Punica granatum HOM05D007190 ORTHO05D009130 4.3e-40 168.7 166 54.8
Aqoxy1G03215 Aquilegia oxysepala HOM05D007190 ORTHO05D009130 5.6e-40 168.3 165 55.8
Gohir.D09G001900 Gossypium hirsutum HOM05D007190 ORTHO05D009130 5.6e-40 168.3 168 54.8
Lsat_1_v5_gn_8_139680 Lactuca sativa HOM05D007190 ORTHO05D009130 5.6e-40 168.3 166 54.2
PGSC0003DMG400010559 Solanum tuberosum HOM05D007190 ORTHO05D009130 5.6e-40 168.3 166 54.2
ECA233G1920 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.3e-40 167.9 167 54.5
CAN.G782.8 Capsicum annuum HOM05D007190 ORTHO05D009130 1.2e-39 167.2 166 54.2
Gorai.006G002000 Gossypium raimondii HOM05D007190 ORTHO05D009130 1.6e-39 166.8 168 54.2
Ah.01g003840 Amaranthus hybridus HOM05D007190 ORTHO05D009130 2.8e-39 166.0 165 53.9
Ciclev10015689m.g Citrus clementina HOM05D007190 ORTHO05D009130 2.8e-39 166.0 166 54.2
SalBow7G3091 Salvia bowleyana HOM05D007190 ORTHO05D009130 2.8e-39 166.0 165 54.5
MSTRG.20320 Avicennia marina HOM05D007190 ORTHO05D009130 4.7e-39 165.2 165 54.5
Eucgr.K01098 Eucalyptus grandis HOM05D007190 ORTHO05D009130 4.7e-39 165.2 166 54.8
HanXRQChr13g0392321 Helianthus annuus HOM05D007190 ORTHO05D009130 4.7e-39 165.2 165 53.9
Manes.13G138800 Manihot esculenta HOM05D007190 ORTHO05D009130 4.7e-39 165.2 169 54.4
Migut.H02153 Erythranthe guttata HOM05D007190 ORTHO05D009130 1.4e-38 163.7 165 52.7
MBI07_g17046_MAGBIO Magnolia biondii HOM05D007190 ORTHO05D009130 9.9e-37 157.5 164 52.4
Oeu038788.1 Olea europaea HOM05D007190 ORTHO05D009130 9.9e-37 157.5 198 46.5
THA.LOC104800864 Tarenaya hassleriana HOM05D007190 ORTHO05D009130 9.9e-37 157.5 167 53.3
Aa31LG1G7260 Aethionema arabicum HOM05D007190 ORTHO05D009130 3.8e-36 155.6 167 50.9
Thhalv10007851m.g Eutrema salsugineum HOM05D007190 ORTHO05D009130 4.9e-36 155.2 170 50.6
Sabra19G0100800 Salix brachista HOM05D007190 ORTHO05D009130 8.4e-36 154.5 215 43.7
ATR0602G260 Amborella trichopoda HOM05D007190 ORTHO05D009130 1.9e-35 153.3 165 50.9
CARHR005780 Cardamine hirsuta HOM05D007190 ORTHO05D009130 9.3e-35 151.0 167 49.7
Carub.0001s0560 Capsella rubella HOM05D007190 ORTHO05D009130 1.2e-34 150.6 170 48.8
AT1G06240 Arabidopsis thaliana HOM05D007190 ORTHO05D009130 1.6e-34 150.2 170 48.2
Sp1g05050 Schrenkiella parvula HOM05D007190 ORTHO05D009130 2.1e-34 149.8 170 48.8
VMungo1080G0449 Vigna mungo HOM05D007190 ORTHO05D009130 2.7e-34 149.4 98 73.5
AL1G16230 Arabidopsis lyrata HOM05D007190 ORTHO05D009130 6.0e-34 148.3 170 47.6
BraA08t35513Z Brassica rapa HOM05D007190 ORTHO05D009130 1.3e-33 147.1 171 46.8
unitig_744.g24492 Utricularia gibba HOM05D007190 ORTHO05D009130 2.3e-33 146.4 160 50.0
A08p36070 Brassica napus HOM05D007190 ORTHO05D009130 3.0e-33 146.0 171 46.2
BolC8t47036H Brassica oleracea HOM05D007190 ORTHO05D009130 6.6e-33 144.8 171 46.2
C08p02440 Brassica napus HOM05D007190 ORTHO05D009130 9.6e-32 141.0 171 45.6
Zm00001eb119970 Zea mays HOM05D007190 ORTHO05D009130 9.6e-32 141.0 166 48.8
BcaB03g13427 Brassica carinata HOM05D007190 ORTHO05D009130 2.1e-31 139.8 171 45.0
Os01g0214400 Oryza sativa ssp. japonica HOM05D007190 ORTHO05D009130 6.2e-31 138.3 164 49.4
HPP92_004056 Vanilla planifolia HOM05D007190 ORTHO05D009130 1.4e-30 137.1 169 46.7
Nn1g09051 Nelumbo nucifera HOM05D007190 ORTHO05D009130 2.6e-29 132.9 108 63.0
Sc21g0003800 Simmondsia chinensis HOM05D007190 ORTHO05D009130 9.9e-29 131.0 108 61.1
Mapoly0003s0287 Marchantia polymorpha HOM05D007190 ORTHO05D009130 1.2e-26 124.0 165 42.4
TPR.G11579 Trifolium pratense HOM05D007190 ORTHO05D009130 1.5e-24 117.1 160 45.6
Hma1.2p1_3865F.1_g337840 Hydrangea macrophylla HOM05D007190 ORTHO05D009130 1.4e-22 110.5 96 60.4
Pp3c10_18540 Physcomitrium patens HOM05D007190 ORTHO05D009130 3.1e-22 109.4 164 40.2
HPP92_004047 Vanilla planifolia HOM05D007190 ORTHO05D009130 6.9e-22 108.2 115 52.2
CDE02G1032 Ceratophyllum demersum HOM05D007190 ORTHO05D009130 4.2e-19 99.0 70 71.4
Cre14.g620951 Chlamydomonas reinhardtii HOM05D007190 ORTHO05D009130 1.5e-16 90.5 111 47.7
SMO180G0029 Selaginella moellendorffii HOM05D007190 ORTHO05D009130 1.6e-15 87.0 141 38.3
SMO340G0318 Selaginella moellendorffii HOM05D007190 ORTHO05D009130 1.6e-15 87.0 141 37.6
MCO16G265 Micromonas commoda HOM05D007190 ORTHO05D009130 4.8e-15 85.5 177 34.5
PRCOL_00001242 Prasinoderma coloniale HOM05D007190 ORTHO05D009130 2.9e-12 76.3 119 37.0
Actinidia39339 Actinidia chinensis HOM05D007190 ORTHO05D054507 7.9e-10 68.2 83 50.6
Hma1.2p1_0178F.1_g079040 Hydrangea macrophylla HOM05D007190 ORTHO05D009130 2.5e-08 63.2 59 52.5
ATR0820G197 Amborella trichopoda HOM05D007069 ORTHO05D008964 8.2e-07 58.2 161 29.2
vmacro09230 Vaccinium macrocarpon HOM05D007190 ORTHO05D009130 1.1e-06 57.8 59 50.8
DCAR_019046 Daucus carota HOM05D007069 ORTHO05D008964 2.4e-06 56.6 171 28.1
Cfa011205 Carpinus fangiana HOM05D007069 ORTHO05D008964 4.1e-06 55.8 167 26.3
Sc21g0003810 Simmondsia chinensis HOM05D007190 ORTHO05D009130 4.1e-06 55.8 49 53.1
VMungo1080G0348 Vigna mungo HOM05D007190 ORTHO05D009130 5.3e-06 55.5 30 76.7
Haze_02638 Corylus avellana HOM05D007069 ORTHO05D008964 9.0e-06 54.7 167 26.3


User provided reference genes

Program Settings