Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.9e-204 714.5 350 100.0
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.7e-181 638.6 350 91.4
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.2e-159 565.8 408 73.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.2e-159 565.8 408 73.0
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 7.2e-134 481.1 412 62.1
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 2.0e-128 463.0 408 59.8
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 3.5e-128 462.2 408 60.0
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 4.5e-128 461.8 408 60.0
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 8.6e-127 457.6 409 59.7
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 2.5e-126 456.1 408 60.8
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 5.2e-124 448.4 400 56.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.1e-121 440.7 409 57.5
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 7.0e-121 438.0 408 58.3
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.7e-120 436.0 408 58.8
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 7.8e-120 434.5 409 56.7
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 7.8e-120 434.5 409 56.2
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 7.8e-120 434.5 408 57.4
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 2.3e-119 433.0 409 55.7
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 3.0e-119 432.6 422 56.2
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 5.0e-119 431.8 408 57.8
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 5.0e-119 431.8 409 56.0
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.2e-117 427.2 407 54.5
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.2e-117 427.2 409 55.0
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 2.1e-117 426.4 409 56.2
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 4.7e-117 425.2 409 54.5
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 8.0e-117 424.5 409 55.7
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 6.8e-116 421.4 420 56.9
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 8.9e-116 421.0 409 53.8
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 1.5e-115 420.2 408 58.1
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 2.0e-115 419.9 409 54.5
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 3.4e-115 419.1 408 55.6
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 4.4e-115 418.7 409 54.3
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 5.8e-115 418.3 409 54.3
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 9.8e-115 417.5 408 57.1
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 1.3e-114 417.2 414 53.9
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 2.9e-114 416.0 407 54.8
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 4.9e-114 415.2 407 53.8
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 6.4e-114 414.8 409 53.3
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 6.4e-114 414.8 409 52.6
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 8.3e-114 414.5 413 54.2
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 1.6e-112 410.2 409 52.8
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.6e-112 410.2 408 54.7
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 2.7e-112 409.5 409 53.5
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 2.7e-112 409.5 405 53.8
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 3.5e-112 409.1 410 53.2
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 4.6e-112 408.7 409 52.1
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 6.0e-112 408.3 408 54.2
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 2.3e-111 406.4 407 52.3
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 2.5e-110 402.9 409 53.3
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.3e-110 402.5 410 51.7
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 4.3e-110 402.1 408 53.2
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 5.6e-110 401.7 410 52.9
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.2e-109 400.6 407 54.1
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.2e-109 400.6 410 54.4
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 1.6e-109 400.2 409 52.1
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 2.1e-109 399.8 408 51.5
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 4.7e-109 398.7 407 52.6
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 6.2e-109 398.3 409 51.3
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 6.2e-109 398.3 409 53.5
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 8.1e-109 397.9 409 51.3
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 3.1e-108 396.0 409 51.6
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 4.0e-108 395.6 409 51.1
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 8.9e-108 394.4 409 51.3
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 8.9e-108 394.4 410 51.2
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.2e-107 394.0 409 52.6
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 7.5e-107 391.3 407 51.6
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 1.3e-106 390.6 388 54.9
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.3e-106 390.6 411 51.6
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 1.3e-106 390.6 408 51.7
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.3e-106 390.6 442 49.1
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 3.7e-106 389.0 409 50.4
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 4.9e-106 388.7 411 51.3
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 8.3e-106 387.9 444 48.2
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 8.3e-106 387.9 406 52.0
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 2.1e-104 383.3 407 51.1
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 2.7e-104 382.9 408 51.7
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 2.7e-104 382.9 449 48.8
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 4.6e-104 382.1 409 49.9
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 6.0e-104 381.7 409 52.3
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 6.0e-104 381.7 407 49.9
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 7.8e-104 381.3 408 52.2
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.0e-103 380.9 409 50.1
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 5.1e-103 378.6 409 49.9
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.6e-101 373.6 409 50.9
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 4.7e-101 372.1 413 49.4
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 1.1e-100 370.9 364 56.0
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 1.8e-100 370.2 413 49.2
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.8e-100 370.2 425 48.5
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 2.6e-99 366.3 407 50.6
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 5.8e-99 365.2 420 50.2
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 5.8e-99 365.2 313 63.9
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.2e-96 357.5 404 49.8
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 7.8e-96 354.8 408 48.0
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.0e-95 352.8 408 49.0
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.9e-94 350.1 363 52.1
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 4.3e-94 349.0 480 44.8
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 4.0e-92 342.4 408 45.1
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 4.0e-92 342.4 409 45.0
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 3.4e-91 339.3 378 49.2
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 4.9e-90 335.5 405 45.4
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.2e-88 330.9 403 46.9
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.3e-87 327.4 363 51.2
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 8.4e-82 308.1 354 47.5
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 3.2e-81 306.2 315 51.7
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 2.1e-77 293.5 408 42.4
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 6.9e-76 288.5 418 41.4
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 6.9e-76 288.5 418 41.4
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 6.9e-76 288.5 418 41.4
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 2.9e-74 283.1 377 44.6
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 9.3e-73 278.1 414 40.6
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 7.4e-70 268.5 265 50.6
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.3e-68 262.3 356 44.4
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 2.5e-65 253.4 249 49.8
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 2.1e-64 250.4 254 49.2
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.4e-59 233.0 133 84.2
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 3.8e-58 229.6 251 47.4
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.4e-52 211.1 269 46.5
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 4.1e-52 209.5 245 44.9
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 5.5e-41 172.6 263 35.4
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 3.1e-36 156.8 271 36.2
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 9.1e-36 155.2 235 42.6
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 3.5e-35 153.3 97 74.2
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 5.2e-31 139.4 280 32.1
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 7.2e-25 119.0 102 57.8
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 4.5e-19 99.8 66 68.2
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.5e-17 94.7 292 28.1
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 6.1e-16 89.4 98 49.0
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 3.0e-15 87.0 58 65.5
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.2e-14 85.1 167 36.5
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 2.0e-14 84.3 64 62.5
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 2.6e-14 84.0 66 62.1
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 1.1e-12 78.6 64 60.9
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 2.9e-10 70.5 52 65.4
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 9.5e-09 65.5 76 44.7
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 1.8e-07 61.2 44 61.4
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 2.3e-07 60.8 64 42.2
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 4.0e-07 60.1 52 55.8
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 1.5e-06 58.2 33 72.7
Lsat_1_v5_gn_4_100620 Lactuca sativa HOM05D001733 ORTHO05D001882 3.4e-06 57.0 37 67.6


User provided reference genes

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