Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 7.0e-168 594.0 318 100.0
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.3e-166 589.7 318 99.1
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 5.4e-144 514.6 318 84.9
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 7.0e-144 514.2 318 85.8
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 7.0e-144 514.2 318 85.8
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 8.6e-142 507.3 362 76.5
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 9.2e-136 487.3 318 82.1
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 1.2e-135 486.9 317 81.4
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.0e-134 483.8 318 82.1
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.6e-132 476.5 318 78.9
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 6.2e-132 474.6 319 78.4
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.1e-131 473.8 318 78.9
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.8e-131 473.0 318 78.9
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.3e-131 472.6 318 79.6
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 5.2e-131 471.5 318 77.0
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.5e-130 469.9 320 79.1
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 2.6e-130 469.2 318 76.7
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 4.4e-130 468.4 319 78.4
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 9.8e-130 467.2 318 77.0
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 9.8e-130 467.2 318 78.0
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.3e-129 466.8 318 78.3
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.3e-129 466.8 318 79.2
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.7e-129 466.5 318 77.4
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.7e-129 466.5 319 78.1
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.2e-129 466.1 319 78.1
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 2.9e-129 465.7 318 78.0
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.7e-129 465.3 318 77.0
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 8.3e-129 464.2 318 78.3
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 8.3e-129 464.2 318 78.6
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.1e-128 463.8 318 78.9
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.4e-128 463.4 318 76.7
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.9e-128 463.0 318 77.7
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.9e-128 463.0 318 77.7
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 1.9e-128 463.0 318 77.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 2.4e-128 462.6 318 77.4
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.4e-128 462.6 318 78.0
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.2e-128 462.2 318 76.4
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 5.4e-128 461.5 318 76.1
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 9.2e-128 460.7 319 76.5
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.2e-127 460.3 318 77.0
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.6e-127 459.9 318 75.5
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 3.5e-127 458.8 318 75.8
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 4.6e-127 458.4 318 78.0
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 4.6e-127 458.4 318 77.4
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 1.3e-126 456.8 318 77.4
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.3e-126 456.1 318 75.8
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 2.3e-126 456.1 318 77.7
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 3.0e-126 455.7 318 76.1
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.1e-125 453.8 318 77.4
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 2.5e-125 452.6 318 77.0
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.3e-125 452.2 319 79.9
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 3.3e-125 452.2 318 76.7
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.3e-125 452.2 318 77.0
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 3.3e-125 452.2 318 76.4
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.3e-125 452.2 318 74.2
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 5.6e-125 451.4 318 75.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 1.6e-124 449.9 318 76.7
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 3.6e-124 448.7 318 76.1
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 6.2e-124 448.0 318 75.8
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 5.2e-123 444.9 318 75.8
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 2.0e-122 443.0 318 75.5
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 2.0e-122 443.0 319 74.3
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-121 440.3 318 73.0
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.7e-121 439.9 318 75.2
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.2e-121 439.5 317 72.9
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 2.2e-121 439.5 318 73.6
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 1.9e-120 436.4 318 73.3
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.2e-120 435.6 318 72.3
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 5.4e-120 434.9 318 73.6
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 4.6e-119 431.8 318 72.0
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.7e-118 429.9 315 73.3
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 3.0e-118 429.1 318 73.0
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 3.0e-118 429.1 318 73.3
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 6.6e-118 427.9 318 71.4
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 6.6e-118 427.9 318 71.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.1e-117 427.2 318 72.3
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.1e-117 427.2 318 73.0
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.5e-117 426.0 318 71.1
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 2.5e-117 426.0 319 71.5
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.5e-117 426.0 319 70.8
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 3.3e-117 425.6 323 69.3
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 4.3e-117 425.2 319 72.4
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.1e-116 422.9 318 70.4
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 4.7e-116 421.8 319 71.2
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 6.2e-116 421.4 318 71.7
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 8.1e-116 421.0 319 70.8
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 8.1e-116 421.0 319 71.2
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.4e-115 419.5 353 64.9
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 4.0e-115 418.7 320 70.3
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 6.8e-115 417.9 319 70.5
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 1.5e-114 416.8 318 71.7
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 2.1e-111 406.4 286 77.6
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 3.5e-111 405.6 281 77.6
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 1.7e-110 403.3 319 69.6
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 3.0e-110 402.5 318 68.6
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 3.9e-110 402.1 270 79.3
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.1e-109 400.6 305 71.1
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.2e-108 397.1 302 70.5
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.2e-108 397.1 293 73.0
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.2e-108 397.1 318 67.9
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.6e-108 396.7 318 67.6
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 2.8e-108 396.0 302 70.5
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 8.1e-108 394.4 302 70.2
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.6e-106 389.4 287 72.5
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 2.6e-106 389.4 321 65.7
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.1e-104 384.0 256 79.3
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 2.4e-104 382.9 280 72.5
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 7.1e-104 381.3 294 70.1
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 6.0e-103 378.3 270 74.1
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 7.8e-103 377.9 294 68.7
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 8.7e-102 374.4 320 64.7
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.2e-98 364.0 318 64.8
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 1.2e-98 364.0 318 66.0
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-98 363.6 264 73.5
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.5e-98 363.6 318 66.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 7.6e-98 361.3 230 83.5
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.1e-95 353.2 270 68.9
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 8.7e-94 347.8 242 76.0
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.1e-93 347.4 323 63.2
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.3e-93 345.9 322 61.2
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.8e-91 340.1 318 61.0
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 8.2e-84 314.7 318 55.7
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.5e-82 310.5 229 70.7
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.2e-76 290.0 391 49.6
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 5.3e-75 285.4 748 32.9
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 2.7e-71 273.1 322 50.9
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 6.3e-68 261.9 320 48.4
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.9e-65 253.1 315 50.2
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 5.1e-62 242.3 182 76.9
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 6.3e-60 235.3 298 49.0
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 7.0e-59 231.9 150 86.7
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 1.3e-52 211.1 193 64.2
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 5.5e-48 195.7 274 49.3
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 3.0e-46 189.9 160 69.4
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.3e-44 184.5 122 84.4
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 1.3e-41 174.5 154 66.9
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 5.0e-41 172.6 120 80.8
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.5e-40 171.0 252 43.7
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 9.8e-37 158.3 115 64.3
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 1.7e-36 157.5 275 42.5
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.3e-32 143.3 167 57.5
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 4.2e-32 142.9 311 33.4
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.6e-31 139.8 112 67.0
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 8.0e-31 138.7 91 74.7
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.0e-29 134.0 111 69.4
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 7.0e-27 125.6 138 58.7
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 1.7e-25 120.9 100 61.0
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 3.3e-24 116.7 93 66.7
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 8.0e-23 112.1 89 61.8
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.9e-20 103.6 67 79.1
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 4.7e-15 86.3 394 26.1
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.2e-14 82.8 62 74.2
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.2e-11 73.6 92 50.0
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 3.6e-07 60.1 90 41.1
PRCOL_00004763 Prasinoderma coloniale HOM05D001748 ORTHO05D001759 1.4e-06 58.2 129 34.9
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 1.8e-06 57.8 32 78.1


User provided reference genes

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