Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.0e-54 216.9 141 100.0
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.0e-43 178.3 128 80.5
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 6.9e-35 151.0 141 63.8
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.2e-34 150.2 141 63.8
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.4e-32 143.3 151 59.6
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 3.2e-32 142.1 151 58.9
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 3.2e-32 142.1 151 55.6
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 7.2e-32 141.0 151 58.3
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.2e-31 140.2 151 58.3
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.6e-31 139.8 151 57.0
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.6e-31 139.8 151 57.6
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 4.6e-31 138.3 151 55.6
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 6.1e-31 137.9 149 55.0
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.3e-30 136.7 151 56.3
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 2.3e-30 136.0 152 54.6
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.3e-30 136.0 151 57.0
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 2.3e-30 136.0 151 54.3
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 3.0e-30 135.6 151 54.3
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 3.9e-30 135.2 144 64.6
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 3.9e-30 135.2 151 55.6
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 5.1e-30 134.8 151 55.0
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 6.7e-30 134.4 151 54.3
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.7e-30 134.0 151 56.3
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 8.7e-30 134.0 151 56.3
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 8.7e-30 134.0 151 54.3
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 8.7e-30 134.0 151 55.0
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.1e-29 133.7 151 57.0
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.1e-29 133.7 151 55.0
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.9e-29 132.9 151 54.3
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.9e-29 132.9 151 55.0
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 2.5e-29 132.5 137 58.4
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.5e-29 132.5 151 66.2
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 4.3e-29 131.7 151 53.6
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 5.7e-29 131.3 151 54.3
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.3e-28 130.2 151 53.6
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 1.3e-28 130.2 151 50.3
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.6e-28 129.8 151 55.0
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.6e-28 129.8 151 54.3
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.2e-28 129.4 152 52.6
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.8e-28 129.0 142 54.2
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 2.8e-28 129.0 151 53.0
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 3.7e-28 128.6 151 57.6
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.7e-28 128.6 147 54.4
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 3.7e-28 128.6 152 52.0
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 4.8e-28 128.3 151 52.3
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 4.8e-28 128.3 151 66.2
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 4.8e-28 128.3 151 66.2
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.2e-28 127.5 151 53.0
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.1e-27 127.1 147 53.7
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 1.1e-27 127.1 156 51.3
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.4e-27 126.7 151 53.0
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.8e-27 126.3 151 63.6
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.8e-27 126.3 145 52.4
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.3e-27 124.8 141 53.2
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 6.9e-27 124.4 151 51.0
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 9.1e-27 124.0 151 51.7
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.2e-26 123.6 151 53.0
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 1.5e-26 123.2 150 51.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 2.0e-26 122.9 151 52.3
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 2.6e-26 122.5 141 51.8
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 5.9e-26 121.3 151 49.7
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 5.9e-26 121.3 151 50.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 5.9e-26 121.3 151 64.2
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.3e-25 120.2 152 50.7
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 1.7e-25 119.8 152 50.7
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.9e-25 119.0 151 60.9
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 3.8e-25 118.6 151 48.3
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 3.8e-25 118.6 152 50.0
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.1e-24 117.1 151 53.6
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 5.5e-24 114.8 119 56.3
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 9.4e-24 114.0 151 47.7
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 2.7e-23 112.5 151 47.7
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 7.9e-23 110.9 140 47.1
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 3.9e-22 108.6 143 45.5
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.5e-21 106.7 151 45.7
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 1.5e-21 106.7 138 47.1
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 7.4e-21 104.4 151 45.7
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 9.7e-21 104.0 151 43.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.7e-20 103.2 121 51.2
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 2.8e-20 102.4 123 52.8
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.8e-20 102.4 147 50.3
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 3.7e-20 102.1 122 52.5
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 3.7e-20 102.1 132 47.0
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 6.3e-20 101.3 122 52.5
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 6.3e-20 101.3 122 52.5
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 8.2e-20 100.9 148 48.6
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.1e-19 100.5 151 44.4
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 3.1e-19 99.0 151 42.4
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 4.1e-19 98.6 151 42.4
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 4.1e-19 98.6 151 42.4
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 4.1e-19 98.6 151 42.4
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 4.1e-19 98.6 151 42.4
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 4.1e-19 98.6 151 42.4
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 4.1e-19 98.6 151 43.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 6.9e-19 97.8 151 42.4
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.9e-19 97.8 152 46.1
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 6.9e-19 97.8 152 46.1
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 6.9e-19 97.8 151 42.4
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 9.1e-19 97.4 151 43.0
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.2e-18 97.1 151 42.4
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.2e-18 97.1 152 45.4
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.0e-18 96.3 119 50.4
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 2.6e-18 95.9 151 42.4
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 3.4e-18 95.5 118 50.0
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 3.4e-18 95.5 112 51.8
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.7e-17 93.2 125 53.6
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.5e-17 91.3 129 48.1
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 8.5e-17 90.9 118 49.2
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 8.5e-17 90.9 119 47.9
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.6e-15 86.7 122 60.7
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 2.1e-15 86.3 144 38.2
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.0e-14 82.4 118 45.8
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 2.6e-13 79.3 112 45.5
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.3e-13 79.0 150 41.3
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 9.7e-13 77.4 56 67.9
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 4.8e-12 75.1 58 74.1
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.4e-11 73.6 63 68.3
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.8e-11 73.2 57 68.4
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 2.4e-11 72.8 57 61.4
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 1.6e-10 70.1 52 71.2
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 1.6e-10 70.1 151 33.8
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 2.0e-10 69.7 147 36.7
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.2e-08 62.4 58 56.9
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.7e-07 59.3 58 55.2


User provided reference genes

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